View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5568_low_3 (Length: 392)
Name: NF5568_low_3
Description: NF5568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5568_low_3 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 10 - 392
Target Start/End: Original strand, 37135135 - 37135517
Alignment:
| Q |
10 |
gcaaaggtggtaaattaattatggcgaaaacgatctcgaacaacgatgaaaatgttgaggttgacattgattcatcaaaagacgatgttgatgctagaac |
109 |
Q |
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| T |
37135135 |
gcaaaggtggtaaattaattatggcgaaaacgatctcgaacaacgatgaaaatgttgaggttgacattgattcatcaaaagacgatgttgatgctagaac |
37135234 |
T |
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| Q |
110 |
tggcatgaagaagggaccgtggaccccacatgaagacatgattttgacagagtacgtgaataagcatggtgaagggaattggaattttgttcagaagaat |
209 |
Q |
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| T |
37135235 |
tggcatgaagaagggaccgtggaccccacatgaagacatgattttgacagagtacgtgaataagcatggtgaagggaattggaattttgttcagaagaat |
37135334 |
T |
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| Q |
210 |
tcaggattgttaaggtgtggaaaaagctgcagacttagatgggctaatcatctgaggccgaatcttaaaaagggttcattttctgaagaggaagaaaaaa |
309 |
Q |
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| T |
37135335 |
tcaggattgttaaggtgtggaaaaagctgcagacttagatgggctaatcatctgaggccgaatcttaaaaagggttcattttctgaagaggaagaaaaaa |
37135434 |
T |
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| Q |
310 |
tcatcatggaacttcatgctaagcttggaaacaaatgggctcgaatggctactcaggtattatattatactatattttataaa |
392 |
Q |
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| T |
37135435 |
tcatcattgaacttcatgctaagcttggaaacaaatgggctcgaatggctactcaggtattatattatactatattttataaa |
37135517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 247
Target Start/End: Complemental strand, 33732280 - 33732242
Alignment:
| Q |
209 |
ttcaggattgttaaggtgtggaaaaagctgcagacttag |
247 |
Q |
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| T |
33732280 |
ttcaggcttgttaaggtgtggaaaaagctgcagacttag |
33732242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 359
Target Start/End: Complemental strand, 20741013 - 20740879
Alignment:
| Q |
225 |
tgtggaaaaagctgcagacttagatgggctaatcatctgaggccgaatcttaaaaagggttcattttctgaagaggaagaaaaaatcatcatggaacttc |
324 |
Q |
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| T |
20741013 |
tgtgggaaaagttgtaggcttagatgggctaatcatttaagacccaacttgaagaaaggtgcattttctcatgaagaagagaaaatcattgttgaactcc |
20740914 |
T |
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| Q |
325 |
atgctaagcttggaaacaaatgggctcgaatggct |
359 |
Q |
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| T |
20740913 |
atgctcaatttggtaacaaatgggctcgaatggct |
20740879 |
T |
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