View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5568_low_7 (Length: 240)
Name: NF5568_low_7
Description: NF5568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5568_low_7 |
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| [»] scaffold0098 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 5571473 - 5571248
Alignment:
| Q |
1 |
cttttagttacaacaaactcagcctaataaacagccccagctgcacccatgcccaccacacttgtttcctttgatgcatgataaatgttacttagtgaga |
100 |
Q |
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| T |
5571473 |
cttttagttacaacaaactcagcctaataaacagccccagctgcacccatgcccaccacgcttgtttcgtttgatgtaggataaatgttacttagtgaga |
5571374 |
T |
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| Q |
101 |
gctacttgcaaaaaagaagcctctgaaatgcaatcaatctgccataatataaaaagttacttagtgagttaataa---actaacaatgccatgaaataaa |
197 |
Q |
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| T |
5571373 |
gctacttgcaaaaaacaagcctctgaaatgcaatcaatcagccataatataaaaacttacttagtgagttaataagttgctaacgatgccatgaaataaa |
5571274 |
T |
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| Q |
198 |
ttaaagttactaacaaggtaagcatt |
223 |
Q |
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|||||||||||||||||||||||||| |
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| T |
5571273 |
ttaaagttactaacaaggtaagcatt |
5571248 |
T |
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Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 9 - 88
Target Start/End: Complemental strand, 24732486 - 24732407
Alignment:
| Q |
9 |
tacaacaaactcagcctaataaacagccccagctgcacccatgcccaccacacttgtttcctttgatgcatgataaatgt |
88 |
Q |
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| T |
24732486 |
tacaacaaactcagcctaataaacagtcccagctgcacccatgcccatcacacctgtttcctttgatgcaagataaatgt |
24732407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0098 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0098
Description:
Target: scaffold0098; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 835 - 926
Alignment:
| Q |
1 |
cttttagttacaacaaactcagcctaataaacagccccagctgcacccatg----cccaccacacttgtttcctttgatgcatgataaatgt |
88 |
Q |
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||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||| |||||||||||||||| |||| ||||||||| |
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| T |
835 |
cttttagttacaacaaactcagcctaataaacatccccaaatgcacccatatattcccactacacttgtttcctttggtgcaagataaatgt |
926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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