View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5569-Insertion-10 (Length: 343)
Name: NF5569-Insertion-10
Description: NF5569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5569-Insertion-10 |
 | |
|
| [»] chr7 (6 HSPs) |
| |
|
| [»] scaffold0036 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 307; Significance: 1e-173; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 8 - 343
Target Start/End: Complemental strand, 34914157 - 34913826
Alignment:
| Q |
8 |
ttttttacctctaagaaggtttgaaaaacttgagaaaaggcattcagaaaagcagtgtaaacaaacaaacaaacatgaaataagtcccacatcatttaaa |
107 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
34914157 |
ttttttagctctaagaaggtttgaaaaacttgagaaaaggcattcagaaaagcagtgtaaacaaacaaaca----tgaaataagtcccacatcatttaaa |
34914062 |
T |
|
| Q |
108 |
attagcacagctcaagtgtttatataacacacacgtggaacaattgtcacgaccttacttgaacaggatctgttctataggatcgtactactgtgtcctt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34914061 |
attagcacagctcaagtgtttatataacacacacgtggaacaattgtcacgaccttacttgaacaggatctgttctataggatcgtactactgtgtcctt |
34913962 |
T |
|
| Q |
208 |
gatttctaaggagacaggaacatatgtctggatgatgaatgaagaccgtgcgatcagagcgtgattaacggcttagatgattctcatgttgagacatcat |
307 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34913961 |
gatttctaaggagacaggaacatacgtctggatgatgaatgaagaccgtgcgatcagagcgtgattaacggcttagatgattctcatgttgagacatcat |
34913862 |
T |
|
| Q |
308 |
cttgtgctgtagatgatcgttcttagacacatgttg |
343 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |
|
|
| T |
34913861 |
cttgtgctgtagatgatcgttctcagacacatgttg |
34913826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 8 - 340
Target Start/End: Original strand, 34906156 - 34906496
Alignment:
| Q |
8 |
ttttttacctctaagaaggtttgaaaaacttgagaaaaggcattcagaaaagcagtgtaaac--------aaacaaacaaacatgaaataagtcccacat |
99 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
34906156 |
ttttttagctctaagaaggtttgaaaaacttgagaaaaggcattcagaaaagcagtgtaaacaaacaaacaaacaaacaaacatgaaataagtcccacat |
34906255 |
T |
|
| Q |
100 |
catttaaaattagcacagctcaagtgtttatataacacacacgtggaacaattgtcacgaccttacttgaacaggatctgttctataggatcgtactact |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34906256 |
catttaaaattagcacagctcaagtgtttatataacacacacgtggaacaattgtcacgaccttacttgaacaggatctgttctataggatcgtactact |
34906355 |
T |
|
| Q |
200 |
gtgtccttgatttctaaggagacaggaacatatgtctggatgatgaatgaagaccgtgcgatcagagcgtgattaacggcttagatgattctcatgttga |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34906356 |
gtgtccttgatttctaaggagacaggaacatacgtctggatgatgaatgaagaccgtgcgatcagagcgtgattaacggcttagatgattctcatgttga |
34906455 |
T |
|
| Q |
300 |
gacatcatcttgtgctgtagatgatcgttcttagacacatg |
340 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
34906456 |
gacatcatcttgtgctgtagatgatcgttctcagacacatg |
34906496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 153 - 278
Target Start/End: Complemental strand, 33032799 - 33032674
Alignment:
| Q |
153 |
gtcacgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggagacaggaacatatgtctggatgatgaatgaaga |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || | || |
|
|
| T |
33032799 |
gtcacgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggagacaggaacataaatctggatgaggatttgtga |
33032700 |
T |
|
| Q |
253 |
ccgtgcgatcagagcgtgattaacgg |
278 |
Q |
| |
|
||||| |||||||||||||||||||| |
|
|
| T |
33032699 |
ccgtgtgatcagagcgtgattaacgg |
33032674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 153 - 278
Target Start/End: Complemental strand, 33120359 - 33120234
Alignment:
| Q |
153 |
gtcacgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggagacaggaacatatgtctggatgatgaatgaaga |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || | || |
|
|
| T |
33120359 |
gtcacgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggagacaggaacataaatctggatgaggatttgtga |
33120260 |
T |
|
| Q |
253 |
ccgtgcgatcagagcgtgattaacgg |
278 |
Q |
| |
|
||||| |||||||||||||||||||| |
|
|
| T |
33120259 |
ccgtgtgatcagagcgtgattaacgg |
33120234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 156 - 279
Target Start/End: Complemental strand, 1470719 - 1470596
Alignment:
| Q |
156 |
acgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggagacaggaacatatgtctggatgatgaatgaagaccg |
255 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| | ||||| |
|
|
| T |
1470719 |
acgaccttacttgaacatgatctattctataggatcgtactactgtgtccttgatttctaaggagacaggaacatacgtctggtggatgaaccatgaccg |
1470620 |
T |
|
| Q |
256 |
tgcgatcagagcgtgattaacggc |
279 |
Q |
| |
|
|| ||||||||| ||||||||||| |
|
|
| T |
1470619 |
tgtgatcagagcatgattaacggc |
1470596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 90 - 338
Target Start/End: Original strand, 35702363 - 35702598
Alignment:
| Q |
90 |
agtcccacatcatttaaaattagcacagctcaagtgtttatataacacacacgtggaacaattgtcacgaccttacttgaacaggatctgttctatagga |
189 |
Q |
| |
|
||||||||||| ||| ||| ||||| | ||||| |||||||||| ||||| |||| | || | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35702363 |
agtcccacatcgtttgaaactagcagaactcaaatgtttatatagcacacgcgtgaatcattggtcacgaccttacttgaacaggatctgttctatagga |
35702462 |
T |
|
| Q |
190 |
tcgtactactgtgtccttgatttctaaggagacaggaacatatgtctggatgatgaatgaagaccgtgcgatcagagcgtgattaacggcttagatga-- |
287 |
Q |
| |
|
| ||||||||||||| ||||| || ||| |||||||||| || ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
35702463 |
tggtactactgtgtctatgattcct--------------ata-----ggatgatgaaagacaaccgtgcgatcagagcgtgattaacggctgagatgatt |
35702543 |
T |
|
| Q |
288 |
-ttctcatgttgaga---catcatcttgtgctgtagatgatcgttcttagacaca |
338 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
35702544 |
cttctcatgttgagacatcatcatcttgtgctgtagatgatcgttctcagacaca |
35702598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 90 - 338
Target Start/End: Complemental strand, 41108299 - 41108051
Alignment:
| Q |
90 |
agtcccacatcatttaaaattagcacagctcaagtgtttatataacacacacgtggaacaattgtcacgaccttacttgaacaggatctgttctatagga |
189 |
Q |
| |
|
||||||||||| ||| ||| ||| | | |||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41108299 |
agtcccacatcgtttgaaactagaagaactcaagtgtttatataacacacgcgtggagcaatagtcacgaccttacttgaacaggatctgttctatagga |
41108200 |
T |
|
| Q |
190 |
tcgtactactgtgtccttgatttctaaggagacaggaacatatgtctggatgatgaatgaagaccgtgcgatcagagcgtgattaacggcttagatgatt |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||| |||||||| |
|
|
| T |
41108199 |
tcgtactactgtgtccttgatttctaaggagacaggaacatatgtctggatgatgaacaaagaccatgcgatcagagcgtgattaatggctgagatgatt |
41108100 |
T |
|
| Q |
290 |
ctcatgttgagacatcatcttgtgctgtagatgatcgttcttagacaca |
338 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
41108099 |
ctcatgttgagacataatcttgtgctgtagatgatcgttctcagacaca |
41108051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 162 - 288
Target Start/End: Original strand, 7600923 - 7601048
Alignment:
| Q |
162 |
ttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggagacaggaacatatgtctggatgatgaatgaagaccgtgcgat |
261 |
Q |
| |
|
||||||| ||||||| ||||||||||| | |||| | ||||||||||||||||| ||| ||| ||||| | || ||| ||||||| | ||||||| ||| |
|
|
| T |
7600923 |
ttacttggacaggatttgttctataggcttgtacaattgtgtccttgatttctagggaaacatgaacacaagt-tggtggatgaatcatgaccgtgagat |
7601021 |
T |
|
| Q |
262 |
cagagcgtgattaacggcttagatgat |
288 |
Q |
| |
|
||||| |||||||||||| ||||||| |
|
|
| T |
7601022 |
cagagagtgattaacggccaagatgat |
7601048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 97; Significance: 1e-47; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 155 - 279
Target Start/End: Complemental strand, 10101156 - 10101032
Alignment:
| Q |
155 |
cacgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggagacaggaacatatgtctggatgatgaatgaagacc |
254 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| | |||| |
|
|
| T |
10101156 |
cacgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggagacaggaacatacgtctggtggatgaaccatgacc |
10101057 |
T |
|
| Q |
255 |
gtgcgatcagagcgtgattaacggc |
279 |
Q |
| |
|
||| ||||||||||||||||||||| |
|
|
| T |
10101056 |
gtgtgatcagagcgtgattaacggc |
10101032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 155 - 280
Target Start/End: Original strand, 9678699 - 9678824
Alignment:
| Q |
155 |
cacgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggagacaggaacatatgtctggatgatgaatgaagacc |
254 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||| | ||| |
|
|
| T |
9678699 |
cacgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttcaaaggagacaggaacatacgtctggtggatgaatcatgact |
9678798 |
T |
|
| Q |
255 |
gtgcgatcagagcgtgattaacggct |
280 |
Q |
| |
|
||| |||||||||||||||||||||| |
|
|
| T |
9678799 |
gtgtgatcagagcgtgattaacggct |
9678824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 155 - 279
Target Start/End: Original strand, 10214390 - 10214514
Alignment:
| Q |
155 |
cacgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggagacaggaacatatgtctggatgatgaatgaagacc |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||| | |||| |
|
|
| T |
10214390 |
cacgaccttacttgaacaggatctgttctataggattgtactactgtgtccttgatttctaaggagataggaacatatgtctggtagatgagttgtgacc |
10214489 |
T |
|
| Q |
255 |
gtgcgatcagagcgtgattaacggc |
279 |
Q |
| |
|
||| ||||||||||||||||||||| |
|
|
| T |
10214490 |
gtgtgatcagagcgtgattaacggc |
10214514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 155 - 288
Target Start/End: Complemental strand, 10104959 - 10104826
Alignment:
| Q |
155 |
cacgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggagacaggaacatatgtctggatgatgaatgaagacc |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||| |||||| |||||| | |||| |
|
|
| T |
10104959 |
cacgaccttacttgaacaggatctgttctataggattatactactgtgtccttgatttctaagaagacaggagcatacgtctggtggatgaaccatgacc |
10104860 |
T |
|
| Q |
255 |
gtgcgatcagagcgtgattaacggcttagatgat |
288 |
Q |
| |
|
||| ||||||||||||||||||||| | |||||| |
|
|
| T |
10104859 |
gtgtgatcagagcgtgattaacggcctggatgat |
10104826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 156 - 229
Target Start/End: Complemental strand, 21036305 - 21036232
Alignment:
| Q |
156 |
acgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggagacaggaaca |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
21036305 |
acgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggaaacagaaaca |
21036232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 156 - 229
Target Start/End: Complemental strand, 20982899 - 20982827
Alignment:
| Q |
156 |
acgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggagacaggaaca |
229 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||||||| ||| |||||||||||||||||| || ||||| |
|
|
| T |
20982899 |
acgaccttact-gaacaggatctgatctataggatcgtactattgtatccttgatttctaaggaggcacgaaca |
20982827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 216 - 336
Target Start/End: Original strand, 19702 - 19822
Alignment:
| Q |
216 |
aggagacaggaacatatgtctggatgatgaatgaagaccgtgcgatcagagcgtgattaacggcttagatgattctcatgttgagacatcatcttgtgct |
315 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
19702 |
aggagacaggaacatatgtctagatgatgaacgaagaccgtgagatcagagcgtgattaacggctgagatgattctcatgttaagacatcatcttgtgct |
19801 |
T |
|
| Q |
316 |
gtagatgatcgttcttagaca |
336 |
Q |
| |
|
|||||| |||||||| ||||| |
|
|
| T |
19802 |
gtagataatcgttctcagaca |
19822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 159 - 229
Target Start/End: Original strand, 26384421 - 26384491
Alignment:
| Q |
159 |
accttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggagacaggaaca |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
26384421 |
accttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggagacagaaaca |
26384491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 146 - 207
Target Start/End: Original strand, 22366682 - 22366743
Alignment:
| Q |
146 |
aacaattgtcacgaccttacttgaacaggatctgttctataggatcgtactactgtgtcctt |
207 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22366682 |
aacaatagtcacgaccttatttgaacaggatctgttctataggatcgtactactgtgtcctt |
22366743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 158 - 278
Target Start/End: Original strand, 7224365 - 7224485
Alignment:
| Q |
158 |
gaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggagacaggaacatatgtctggatgatgaatgaagaccgtg |
257 |
Q |
| |
|
|||||||||| || | ||| ||||||||||||||||| | || |||||||||||||||||||||| ||||||| ||||||||| |||| | || ||| |
|
|
| T |
7224365 |
gaccttacttaaatatgatttgttctataggatcgtaacattgcgtccttgatttctaaggagacatgaacataaatctggatgaggaattatgaatgtg |
7224464 |
T |
|
| Q |
258 |
cgatcagagcgtgattaacgg |
278 |
Q |
| |
|
||| ||||| |||||||||| |
|
|
| T |
7224465 |
tgattagagcatgattaacgg |
7224485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 156 - 216
Target Start/End: Complemental strand, 1086970 - 1086910
Alignment:
| Q |
156 |
acgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaa |
216 |
Q |
| |
|
||||||||||||||||| ||||| || |||| |||||||||| |||||||||||||||||| |
|
|
| T |
1086970 |
acgaccttacttgaacaagatctattttataagatcgtactattgtgtccttgatttctaa |
1086910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 156 - 216
Target Start/End: Original strand, 5130615 - 5130675
Alignment:
| Q |
156 |
acgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaa |
216 |
Q |
| |
|
||||||||||||||||| ||||| || |||||||||||| ||||||||||||||||||||| |
|
|
| T |
5130615 |
acgaccttacttgaacaagatctcttttataggatcgtattactgtgtccttgatttctaa |
5130675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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