View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5569-Insertion-16 (Length: 190)
Name: NF5569-Insertion-16
Description: NF5569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5569-Insertion-16 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 67; Significance: 5e-30; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 5e-30
Query Start/End: Original strand, 124 - 190
Target Start/End: Complemental strand, 38733440 - 38733374
Alignment:
| Q |
124 |
taagcataacccagttgagaaaaaccaattgggtcgctgaaaaaccatgtgataaaaaagctaaacg |
190 |
Q |
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| T |
38733440 |
taagcataacccagttgagaaaaaccaattgggtcgctgaaaaaccatgtgataaaaaagctaaacg |
38733374 |
T |
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Target: chr2; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 7 - 69
Target Start/End: Complemental strand, 38733557 - 38733495
Alignment:
| Q |
7 |
aagagtgagagtaagagagattactcaggtttttcttcagagtcagaggattcatcggaatct |
69 |
Q |
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| T |
38733557 |
aagagtgagagtaagagagattactcaggtttttcttcagagtcagaggattcatcagaatct |
38733495 |
T |
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