View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5569-Insertion-2 (Length: 783)
Name: NF5569-Insertion-2
Description: NF5569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5569-Insertion-2 |
 | |
|
| [»] scaffold1155 (1 HSPs) |
| | |
|
| [»] scaffold0345 (1 HSPs) |
| | |
|
| [»] scaffold0105 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 678; Significance: 0; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 678; E-Value: 0
Query Start/End: Original strand, 7 - 700
Target Start/End: Complemental strand, 55908037 - 55907344
Alignment:
| Q |
7 |
aggtctctcacggatagcagaagcgacaccatcatgagttaaaaatggacatttcaacatcataacctcttcaagaaactcacaattcttacataaatgc |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55908037 |
aggtctctcacggatagcagaagcgacaccatcatgagttaaaaatggacatttcaacatcataacctcttcaagaaactcacaattcttacataaatgc |
55907938 |
T |
|
| Q |
107 |
aaaagtgacgagtcatctatattataataacccgagagattaaccttgcggagcttaggaagcaccattgccatagtctttacccaaacattcatatcaa |
206 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55907937 |
aaaagtgacgagtcgtctatattataataacccgagagattaaccttgcggagcttaggaagcaccattgccatagtctttacccaaacattcatatcaa |
55907838 |
T |
|
| Q |
207 |
aatctctactagcgaaaggattactactactaaagtcaagttcttcaaggaaagggaagcaatcagaaataagaacaaggtcattgttatgtagagaagc |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
55907837 |
aatctctactagcgaaaggattactactactgaagtcaagttcttcaaggaaagggaagcaatcagaaataagaacaaggtcattgttacgtagagaagc |
55907738 |
T |
|
| Q |
307 |
aatgttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgagcgaa |
406 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55907737 |
aatgttggaacaaatgagagaattcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgagcgaa |
55907638 |
T |
|
| Q |
407 |
gtgatatttaatggaaaaggtatttggcagagaagtgcgttgaggtcaccgttgtaggaactaagatcaaggtaggtaatgtaggtgaacctttggaaga |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55907637 |
gtgatatttaatggaaaaggtatttggcagagaagtgcgttgaggtcaccgttgtaggaactaagatcaaggtaggtaatgtaggtgaacctttggaaga |
55907538 |
T |
|
| Q |
507 |
gacgagggaggaaagtgcaagtttgatagaggataattagagagaatcgaagagtgttggtgactgagagaaactgtttggagacggttgagagagattt |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55907537 |
gacgagggaggaaagtgcaagtttgatagaggataattagagagaatcgaagagtgttggtgactgagagaaactgtttggagacggttgagagagattt |
55907438 |
T |
|
| Q |
607 |
caagtagcgaggattgtcgttgatcagaaatgtgaagacatattcccaacaattatcagataaataacaattatttacagctgtcacagttgtg |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55907437 |
caagtagcgaggattgtcgttgatcagaaatgtgaagacatattcccaacaattatcagataaataacaattatttacagctgtcacagttgtg |
55907344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 725 - 783
Target Start/End: Complemental strand, 55907310 - 55907252
Alignment:
| Q |
725 |
gtgtttctgaaagcaaccagtttactcaacctcattgttgttcttcttcttcttttact |
783 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
55907310 |
gtgtttctgaaagcaaccagtttactcaacctcattgttgttgttcttcttcttttact |
55907252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 309 - 411
Target Start/End: Original strand, 661854 - 661956
Alignment:
| Q |
309 |
tgttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgagcgaagt |
408 |
Q |
| |
|
||||| ||||||||||||| || ||||||||||||| ||||||||||||||| || ||| ||||||| ||| | | |||||||||||||||||| || || |
|
|
| T |
661854 |
tgttgtaacaaatgagagaggttaaagttgtaatatattgggagaaagctcgcaaaccattagcgggaatggtggtttggttggagagattgagtgacgt |
661953 |
T |
|
| Q |
409 |
gat |
411 |
Q |
| |
|
||| |
|
|
| T |
661954 |
gat |
661956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 234 - 359
Target Start/End: Complemental strand, 3437755 - 3437630
Alignment:
| Q |
234 |
tactaaagtcaagttcttcaaggaaagggaagcaatcagaaataagaacaaggtcattgttatgtagagaagcaatgttggaacaaatgagagaagtcaa |
333 |
Q |
| |
|
|||||| ||||||| ||||||| ||||||||||||||||| ||||||| || | || ||| ||| || ||| |||||||||| ||||||| ||||| |
|
|
| T |
3437755 |
tactaaggtcaagtacttcaagtaaagggaagcaatcagagataagaattagatagcggtcatggagaaaatcaaagttggaacaactgagagaggtcaa |
3437656 |
T |
|
| Q |
334 |
agttgtaatattttgggagaaagctc |
359 |
Q |
| |
|
||||||||| |||||||||||||||| |
|
|
| T |
3437655 |
agttgtaatcttttgggagaaagctc |
3437630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 241 - 341
Target Start/End: Original strand, 547943 - 548043
Alignment:
| Q |
241 |
gtcaagttcttcaaggaaagggaagcaatcagaaataagaacaaggtcattgttatgtagagaagcaatgttggaacaaatgagagaagtcaaagttgta |
340 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||| ||| ||||| |||||| |||||| |||||||||||||| ||||||| ||||||||||| |
|
|
| T |
547943 |
gtcaagttcttcaaggaaagggaagcaaccagatatacaaaccaggtcgttgttacagagagaatcaatgttggaacaagtgagagagttcaaagttgta |
548042 |
T |
|
| Q |
341 |
a |
341 |
Q |
| |
|
| |
|
|
| T |
548043 |
a |
548043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 245 - 358
Target Start/End: Original strand, 1755485 - 1755598
Alignment:
| Q |
245 |
agttcttcaaggaaagggaagcaatcagaaataagaacaaggtcattgttatgtagagaagcaatgttggaacaaatgagagaagtcaaagttgtaatat |
344 |
Q |
| |
|
||||||||||| |||||||| || |||| ||| || | | ||||||| |||| ||| ||| ||||||||||| ||||||| |||||||||||||| | |
|
|
| T |
1755485 |
agttcttcaagcaaagggaaacagtcagcaatgaggaagaagtcattggtatggagatgagcgatgttggaacatgtgagagaggtcaaagttgtaatct |
1755584 |
T |
|
| Q |
345 |
tttgggagaaagct |
358 |
Q |
| |
|
|||| ||||||||| |
|
|
| T |
1755585 |
tttgagagaaagct |
1755598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 62 - 197
Target Start/End: Original strand, 547773 - 547908
Alignment:
| Q |
62 |
aacatcataacctcttcaagaaactcacaattcttacataaatgcaaaagtgacgagtcatctatattataataacccgagagattaaccttgcggagct |
161 |
Q |
| |
|
||||||| || |||||| |||||||||||| | | ||| || || ||||| | ||||||| ||||| |||| ||| || | ||||||||||||||||| |
|
|
| T |
547773 |
aacatcacaaactcttcgagaaactcacaactttgacacaagtgaaaaagcaatgagtcatttatatagtaatgaccagataaattaaccttgcggagct |
547872 |
T |
|
| Q |
162 |
taggaagcaccattgccatagtctttacccaaacat |
197 |
Q |
| |
|
|||||||| | ||| ||||| |||||||| ||||| |
|
|
| T |
547873 |
taggaagcgctgttgacatagcctttaccccaacat |
547908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 313 - 360
Target Start/End: Original strand, 571330 - 571377
Alignment:
| Q |
313 |
ggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcg |
360 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
571330 |
ggaacaattgagagatgtcaaagttgtaatattttgggagaatgctcg |
571377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 344 - 518
Target Start/End: Original strand, 532773 - 532947
Alignment:
| Q |
344 |
ttttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgagcgaagtgatatttaatggaaaaggtatttggcagagaagtg |
443 |
Q |
| |
|
|||| |||||| |||||||| ||| | ||||| ||| | ||||||| ||||||||||| || |||| || || |||||| ||||||||||||||| |
|
|
| T |
532773 |
tttttggagaaggctcgtaacccatttgcgggaatggtgtgttggttagagagattgagtgatgtgagtttgaagggaaaatatatttggcagagaagcc |
532872 |
T |
|
| Q |
444 |
cgttgaggtcaccgttgtaggaactaagatcaaggtaggtaatgtaggtgaacctttggaagagacgagggagga |
518 |
Q |
| |
|
|||||||||||||||||| |||| |||||| |||| | || |||||| || ||||||| |||||||||| |
|
|
| T |
532873 |
tattgaggtcaccgttgtagcttgtaaggtcaagggaggtgaggttggtgaatctacggaagaggcgagggagga |
532947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 169
Target Start/End: Complemental strand, 1527472 - 1527362
Alignment:
| Q |
59 |
ttcaacatcataacctcttcaagaaactcacaattcttacataaatgcaaaagtgacgagtcatctatattataataacccgagagattaaccttgcgga |
158 |
Q |
| |
|
|||||||||| || ||||| |||||| ||||||| ||||| || |||||||| ||||||||| | || | || ||| ||||||||||||||| ||| |
|
|
| T |
1527472 |
ttcaacatcaaaatctcttgaagaaatacacaatttttacacaagtgcaaaagcaacgagtcatttgcatagtgatgaccagagagattaaccttgtgga |
1527373 |
T |
|
| Q |
159 |
gcttaggaagc |
169 |
Q |
| |
|
||||||||||| |
|
|
| T |
1527372 |
gcttaggaagc |
1527362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 321 - 360
Target Start/End: Original strand, 553767 - 553806
Alignment:
| Q |
321 |
tgagagaagtcaaagttgtaatattttgggagaaagctcg |
360 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
553767 |
tgagagaggtcaaagttgtaatgttttgggagaaagctcg |
553806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 500; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 7 - 558
Target Start/End: Complemental strand, 1036973 - 1036422
Alignment:
| Q |
7 |
aggtctctcacggatagcagaagcgacaccatcatgagttaaaaatggacatttcaacatcataacctcttcaagaaactcacaattcttacataaatgc |
106 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1036973 |
aggtctctcacggatagcagaagcgacatcatcatgagttaaaaatggacatttcaacatcataacctcttcaagaaactcacaattcttacataaatgc |
1036874 |
T |
|
| Q |
107 |
aaaagtgacgagtcatctatattataataacccgagagattaaccttgcggagcttaggaagcaccattgccatagtctttacccaaacattcatatcaa |
206 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1036873 |
aaaagtgacgagtcgtctatattataataacccgagagattaaccttgcggagcttaggaagcaccattgccatagtctttacccaaacattcatatcaa |
1036774 |
T |
|
| Q |
207 |
aatctctactagcgaaaggattactactactaaagtcaagttcttcaaggaaagggaagcaatcagaaataagaacaaggtcattgttatgtagagaagc |
306 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| || |||||| |
|
|
| T |
1036773 |
aatctctactagcgaaaggattactactattgaagtcaagttcttcaaggaaaggaaagcaatcagaaataagaacaagatcattgttacatatagaagc |
1036674 |
T |
|
| Q |
307 |
aatgttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgagcgaa |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1036673 |
aatgttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgagcgaa |
1036574 |
T |
|
| Q |
407 |
gtgatatttaatggaaaaggtatttggcagagaagtgcgttgaggtcaccgttgtaggaactaagatcaaggtaggtaatgtaggtgaacctttggaaga |
506 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
1036573 |
gtgatatttaatggaaaaggtatttggtagagaagcgcgttgaggtcaccgttgtaggaactaagatcaaggtaggtaatgttggtgaacctttggaaga |
1036474 |
T |
|
| Q |
507 |
gacgagggaggaaagtgcaagtttgatagaggataattagagagaatcgaag |
558 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1036473 |
gacgagggaggaaagtgcaagtttgatagaggatagttagagagaatcgaag |
1036422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 319; E-Value: 1e-179
Query Start/End: Original strand, 362 - 700
Target Start/End: Complemental strand, 1036424 - 1036086
Alignment:
| Q |
362 |
aagccagtagcggggatgataggttggttggagagattgagcgaagtgatatttaatggaaaaggtatttggcagagaagtgcgttgaggtcaccgttgt |
461 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1036424 |
aagccagtagcggggatgataggttggttggagagattgagcgaagtgatatttaatggaaaaggtatttggcagagaagcgcgttgaggtcaccgttgt |
1036325 |
T |
|
| Q |
462 |
aggaactaagatcaaggtaggtaatgtaggtgaacctttggaagagacgagggaggaaagtgcaagtttgatagaggataattagagagaatcgaagagt |
561 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1036324 |
aggaactaagatcaaggtaggtaatgttggtgaacctttggaagagacgagggaggaaagtgcaagtttgatagaggatagttagagagaatcgaagagt |
1036225 |
T |
|
| Q |
562 |
gttggtgactgagagaaactgtttggagacggttgagagagatttcaagtagcgaggattgtcgttgatcagaaatgtgaagacatattcccaacaatta |
661 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |
|
|
| T |
1036224 |
gttggtgactgagagaaactgtttggagacggttgagagagatttcaagtagcgaggattgtcattgatcagaaatgtgaagacatattccgaacaatta |
1036125 |
T |
|
| Q |
662 |
tcagataaataacaattatttacagctgtcacagttgtg |
700 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1036124 |
tcagataaataacaattatttacagctgtcacagttgtg |
1036086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 725 - 783
Target Start/End: Complemental strand, 1036052 - 1035994
Alignment:
| Q |
725 |
gtgtttctgaaagcaaccagtttactcaacctcattgttgttcttcttcttcttttact |
783 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
1036052 |
gtgtttctgaaagcaaccagtttattcaacctcattgttgttcttcttcttcttttact |
1035994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 563 - 614
Target Start/End: Complemental strand, 44575224 - 44575173
Alignment:
| Q |
563 |
ttggtgactgagagaaactgtttggagacggttgagagagatttcaagtagc |
614 |
Q |
| |
|
||||||| ||||||||||||||| |||||| | |||||||| |||||||||| |
|
|
| T |
44575224 |
ttggtgattgagagaaactgttttgagacgatggagagagacttcaagtagc |
44575173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 308 - 358
Target Start/End: Complemental strand, 45244909 - 45244859
Alignment:
| Q |
308 |
atgttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagct |
358 |
Q |
| |
|
|||||| ||||||||||||| |||||| || ||||| |||||||||||||| |
|
|
| T |
45244909 |
atgttgtaacaaatgagagaggtcaaatttctaatagtttgggagaaagct |
45244859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 5e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 545 - 613
Target Start/End: Complemental strand, 41900315 - 41900247
Alignment:
| Q |
545 |
agagagaatcgaagagtgttggtgactgagagaaactgtttggagacggttgagagagatttcaagtag |
613 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
41900315 |
agagagaatcgaagagtgttggtgatggagagaaactgtttggagacgagtgagagagatttcaagtag |
41900247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 313 - 354
Target Start/End: Complemental strand, 20477496 - 20477455
Alignment:
| Q |
313 |
ggaacaaatgagagaagtcaaagttgtaatattttgggagaa |
354 |
Q |
| |
|
||||||| ||||||| ||||||||| |||||||||||||||| |
|
|
| T |
20477496 |
ggaacaactgagagaggtcaaagttttaatattttgggagaa |
20477455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 8 - 182
Target Start/End: Complemental strand, 17627343 - 17627169
Alignment:
| Q |
8 |
ggtctctcacggatagcagaagcgacaccatcatgagttaaaaatggacatttcaacatcataacctcttcaagaaactcacaattcttacataaatgca |
107 |
Q |
| |
|
|||||||||||||| |||||||| | |||||| |||||| ||| | | || |||| || ||||||||| |||||||||||||| ||||| || |||| |
|
|
| T |
17627343 |
ggtctctcacggatggcagaagcaatgccatcacaagttaaggatgaatacttgaacaacacaacctcttcgagaaactcacaatttttacacaagtgca |
17627244 |
T |
|
| Q |
108 |
aaagtgacgagtcatctatattataataacccgagagattaaccttgcggagcttaggaagcaccattgccatag |
182 |
Q |
| |
|
||||| | |||||| ||||| |||| || || | ||| | |||||||||||||||||||||||||| ||||| |
|
|
| T |
17627243 |
aaagtaatgagtcacttatatcgtaatgacgagataaatttatcttgcggagcttaggaagcaccattgacatag |
17627169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 310 - 410
Target Start/End: Original strand, 14004140 - 14004240
Alignment:
| Q |
310 |
gttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgagcgaagtg |
409 |
Q |
| |
|
|||||||||||| || || |||||||||||||| || || ||||||||||| || ||| |||| || | ||| ||||||||||| ||||||||||| ||| |
|
|
| T |
14004140 |
gttggaacaaataagtgaggtcaaagttgtaatgttctgagagaaagctcgcaaaccattagcaggaaggatgggttggttggaaagattgagcgatgtg |
14004239 |
T |
|
| Q |
410 |
a |
410 |
Q |
| |
|
| |
|
|
| T |
14004240 |
a |
14004240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 308 - 424
Target Start/End: Complemental strand, 17642996 - 17642880
Alignment:
| Q |
308 |
atgttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgagcgaag |
407 |
Q |
| |
|
|||| ||||||| ||||||| ||||||||||||||||| |||||||||||| |||| ||| | | ||| ||| | | ||||||||||||||||| || | |
|
|
| T |
17642996 |
atgtgggaacaagtgagagaggtcaaagttgtaatattctgggagaaagcttgtaacccattggtgggaatggtgagatggttggagagattgagtgatg |
17642897 |
T |
|
| Q |
408 |
tgatatttaatggaaaa |
424 |
Q |
| |
|
||| || ||||||||| |
|
|
| T |
17642896 |
tgagtttcaatggaaaa |
17642880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 56 - 99
Target Start/End: Original strand, 44244814 - 44244857
Alignment:
| Q |
56 |
catttcaacatcataacctcttcaagaaactcacaattcttaca |
99 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
44244814 |
catttcaacatcctaacctcttcaagaaactcacaattcttaca |
44244857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 313 - 402
Target Start/End: Complemental strand, 17635712 - 17635623
Alignment:
| Q |
313 |
ggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgag |
402 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||| |||||||||||||||| ||| ||| || ||| | |||||||||| |||||||| |
|
|
| T |
17635712 |
ggaacaagtgagagaggtcaaagttgtaatattccgggagaaagctcgtaacccattagttggaatggtgagttggttggacagattgag |
17635623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 310 - 410
Target Start/End: Complemental strand, 5766664 - 5766564
Alignment:
| Q |
310 |
gttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgagcgaagtg |
409 |
Q |
| |
|
|||||||||||| || || |||||||||||||| || || ||||||||||| || ||| |||| || | ||| |||||||||| ||||||||||| ||| |
|
|
| T |
5766664 |
gttggaacaaataagtgaggtcaaagttgtaatgttctgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtg |
5766565 |
T |
|
| Q |
410 |
a |
410 |
Q |
| |
|
| |
|
|
| T |
5766564 |
a |
5766564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 314 - 358
Target Start/End: Original strand, 32151969 - 32152013
Alignment:
| Q |
314 |
gaacaaatgagagaagtcaaagttgtaatattttgggagaaagct |
358 |
Q |
| |
|
|||||| ||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
32151969 |
gaacaagtgagagaggtcaaagttgtaatgttttgggagaaagct |
32152013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 313 - 360
Target Start/End: Original strand, 21236154 - 21236201
Alignment:
| Q |
313 |
ggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcg |
360 |
Q |
| |
|
||||||| ||||||| |||||||||||| ||||||||||||| ||||| |
|
|
| T |
21236154 |
ggaacaattgagagatgtcaaagttgtagtattttgggagaatgctcg |
21236201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 329 - 367
Target Start/End: Complemental strand, 18314678 - 18314640
Alignment:
| Q |
329 |
gtcaaagttgtaatattttgggagaaagctcgtaagcca |
367 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
18314678 |
gtcaaagttgtaatattttgagagaaaactcgtaagcca |
18314640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 308 - 363
Target Start/End: Original strand, 10615708 - 10615763
Alignment:
| Q |
308 |
atgttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcgtaa |
363 |
Q |
| |
|
|||| ||||||| ||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
10615708 |
atgtgggaacaagtgagagaggtcaaagttgtaatcttttgggagaaagctcgtaa |
10615763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 306 - 420
Target Start/End: Original strand, 7977866 - 7977980
Alignment:
| Q |
306 |
caatgttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgagcga |
405 |
Q |
| |
|
||||||| ||||| |||| || |||||||||| |||||||||||||||| || | || ||| ||| || ||| |||| ||||||||||||||||| || |
|
|
| T |
7977866 |
caatgttagaacatttgagtgaggtcaaagttgcaatattttgggagaaaactggcaacccataagccggaatggtagggtggttggagagattgagtga |
7977965 |
T |
|
| Q |
406 |
agtgatatttaatgg |
420 |
Q |
| |
|
||||| || ||||| |
|
|
| T |
7977966 |
cgtgattttcaatgg |
7977980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 311 - 393
Target Start/End: Original strand, 7555196 - 7555278
Alignment:
| Q |
311 |
ttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttgga |
393 |
Q |
| |
|
||||||||| |||| || || ||||||||||||||||||||||||||||| || ||| | || |||||| | ||||||||||| |
|
|
| T |
7555196 |
ttggaacaagtgagtgaggttaaagttgtaatattttgggagaaagctcgcaatccaattgcagggatggtgggttggttgga |
7555278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 315 - 375
Target Start/End: Original strand, 33161200 - 33161260
Alignment:
| Q |
315 |
aacaaatgagagaagtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggg |
375 |
Q |
| |
|
||||| ||||||||||||||||| |||| |||||||||||| ||| |||||| ||||||| |
|
|
| T |
33161200 |
aacaagtgagagaagtcaaagttttaatggtttgggagaaagttcgcaagccattagcggg |
33161260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000007; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 308 - 363
Target Start/End: Original strand, 6417087 - 6417142
Alignment:
| Q |
308 |
atgttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcgtaa |
363 |
Q |
| |
|
|||| ||||||| ||||||| |||||||||||| | |||||||||||||||||||| |
|
|
| T |
6417087 |
atgtgggaacaagtgagagaggtcaaagttgtattcttttgggagaaagctcgtaa |
6417142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 562 - 615
Target Start/End: Original strand, 6403848 - 6403901
Alignment:
| Q |
562 |
gttggtgactgagagaaactgtttggagacggttgagagagatttcaagtagcg |
615 |
Q |
| |
|
|||||||| ||||| ||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
6403848 |
gttggtgatagagaggaactgtttggatacggctgagagagatttcaagtagcg |
6403901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 308 - 360
Target Start/End: Original strand, 7132300 - 7132352
Alignment:
| Q |
308 |
atgttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcg |
360 |
Q |
| |
|
|||||||||||| |||||| | |||||||||||| ||||||||||||||||| |
|
|
| T |
7132300 |
atgttggaacaatcgagagatgccaaagttgtaatgttttgggagaaagctcg |
7132352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 315 - 358
Target Start/End: Original strand, 6395539 - 6395582
Alignment:
| Q |
315 |
aacaaatgagagaagtcaaagttgtaatattttgggagaaagct |
358 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
6395539 |
aacaactgagagaggtcaaagttgtaatattttgggagagagct |
6395582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 309 - 360
Target Start/End: Original strand, 7135224 - 7135275
Alignment:
| Q |
309 |
tgttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcg |
360 |
Q |
| |
|
||||||||||| |||||| | |||||||||||| ||||||||||||||||| |
|
|
| T |
7135224 |
tgttggaacaatcgagagatgccaaagttgtaatgttttgggagaaagctcg |
7135275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 309 - 360
Target Start/End: Original strand, 7138147 - 7138198
Alignment:
| Q |
309 |
tgttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcg |
360 |
Q |
| |
|
||||||||||| |||||| | |||||||||||| ||||||||||||||||| |
|
|
| T |
7138147 |
tgttggaacaatcgagagatgccaaagttgtaatgttttgggagaaagctcg |
7138198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 315 - 360
Target Start/End: Original strand, 6423907 - 6423952
Alignment:
| Q |
315 |
aacaaatgagagaagtcaaagttgtaatattttgggagaaagctcg |
360 |
Q |
| |
|
||||| ||||||| ||||||||||| || ||||||||||||||||| |
|
|
| T |
6423907 |
aacaagtgagagaggtcaaagttgttatgttttgggagaaagctcg |
6423952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 545 - 610
Target Start/End: Complemental strand, 513493 - 513428
Alignment:
| Q |
545 |
agagagaatcgaagagtgttggtgactgagagaaactgtttggagacggttgagagagatttcaag |
610 |
Q |
| |
|
||||||||||| ||| ||||||||| ||||| |||||||| ||||||| ||||||||||||||| |
|
|
| T |
513493 |
agagagaatcggagattgttggtgatggagagtaactgttttgagacggcggagagagatttcaag |
513428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 304 - 363
Target Start/End: Complemental strand, 13469714 - 13469655
Alignment:
| Q |
304 |
agcaatgttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcgtaa |
363 |
Q |
| |
|
|||||||| ||||||| ||||||| |||| |||||| | |||||||||||||||||||| |
|
|
| T |
13469714 |
agcaatgtgggaacaagtgagagaggtcagcgttgtattcttttgggagaaagctcgtaa |
13469655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1155 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold1155
Description:
Target: scaffold1155; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 321 - 402
Target Start/End: Complemental strand, 1934 - 1853
Alignment:
| Q |
321 |
tgagagaagtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgag |
402 |
Q |
| |
|
|||||| | |||||||||||||||||||||| ||| |||| || ||| ||||| || || ||||||| |||||||||||| |
|
|
| T |
1934 |
tgagagtattcaaagttgtaatattttgggataaaactcgcaacccatctgcgggaattatgggttggtaggagagattgag |
1853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0345
Description:
Target: scaffold0345; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 321 - 402
Target Start/End: Original strand, 8282 - 8363
Alignment:
| Q |
321 |
tgagagaagtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgag |
402 |
Q |
| |
|
|||||| | |||||||||||||||||||||| ||| |||| || ||| ||||| || || ||||||| |||||||||||| |
|
|
| T |
8282 |
tgagagtattcaaagttgtaatattttgggataaaactcgcaacccatctgcgggaattatgggttggtaggagagattgag |
8363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 321 - 402
Target Start/End: Complemental strand, 30697 - 30616
Alignment:
| Q |
321 |
tgagagaagtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgag |
402 |
Q |
| |
|
|||||| | |||||||||||||||||||||| ||| |||| || ||| ||||| || || ||||||| |||||||||||| |
|
|
| T |
30697 |
tgagagtattcaaagttgtaatattttgggataaaactcgcaacccatctgcgggaattatgggttggtaggagagattgag |
30616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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