View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5569-Insertion-3 (Length: 710)

Name: NF5569-Insertion-3
Description: NF5569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5569-Insertion-3
NF5569-Insertion-3
[»] chr1 (3 HSPs)
chr1 (8-88)||(34944126-34944206)
chr1 (162-281)||(34944316-34944435)
chr1 (379-457)||(34944533-34944611)


Alignment Details
Target: chr1 (Bit Score: 81; Significance: 9e-38; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 34944126 - 34944206
Alignment:
Q  8 cgggtatgcttaactcgacaaacataactacataaatgagttaaataagacaaatccttttgttagtggattgcatattta 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34944126 cgggtatgcttaactcgacaaacataactacataaatgagttaaataagacaaatccttttgttagtggattgcatattta 34944206  T

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Target: chr1; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 162 - 281
Target Start/End: Original strand, 34944316 - 34944435
Alignment:
Q  162 cacaatcatctatttgataagatatgatggaattttaagtgtaatannnnnnngacaatactacttaatactccatcaattaaactcatgnnnnnnnngg 261  Q
    ||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||        ||    
T  34944316 cacaatcatctatttgataagatatgatggaattttaagtgtaatatttttttgacaatactacttaatactccatcaattaaactcatgttttttttgg 34944415  T
Q  262 acaaatcaattaaactcatg 281  Q
    ||||||||||||||||||||    
T  34944416 acaaatcaattaaactcatg 34944435  T

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Target: chr1; HSP #3
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 379 - 457
Target Start/End: Original strand, 34944533 - 34944611
Alignment:
Q  379 caaaaactatatggaattggtgatagtggccgggcccgaagcaaggagctagcacgacatgactccatttttatttggg 457  Q
    ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  34944533 caaaaactatatggaattgttgatagtggccgggcccgaagcaaagagctagcacgacatgactccatttttatttggg 34944611  T

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