View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5569-Insertion-6 (Length: 520)
Name: NF5569-Insertion-6
Description: NF5569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5569-Insertion-6 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 497; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 8 - 520
Target Start/End: Original strand, 37531254 - 37531765
Alignment:
| Q |
8 |
gaatgtacatgtctttattagaatcaatcgtatataaagagtcttcagacaccaaaaaatacatgattttcactatagaaatttgtactttagttcacca |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37531254 |
gaatgtacatgtctttattagaatcaatcgtttataaagagtcttcagacaccaaaaaatacatgattttcactatagaaatttgtactttagttcacca |
37531353 |
T |
|
| Q |
108 |
agtcgaaaaaataaactgttctgttaaccctagtagtctttatgctcgagcttctaatgcatttgaccaattagtattaatatcagattaactagtttta |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37531354 |
agtcgaaaaaataaactgttctgttaaccctagtagtctttatgctcgagcttctaatgcatttgaccaattagtattaatatcagattaactagtttta |
37531453 |
T |
|
| Q |
208 |
ctcttaacaaagtttacataaaaacctatccaaataaagattcccaatcacatcataatcaaatgttccaacctaaggacattatgaatattttgtaatt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
37531454 |
ctcttaacaaagtttacataaaaacctatccaaataaagattccca-tcacatcataatcaaatgttccaacctaaggacattttgaatattttgtaatt |
37531552 |
T |
|
| Q |
308 |
ttctccaagctcttcatcataaacatggaattgtcttgttgatacaaacatataaatatctatgttaccgttgtattgtgggcagatacgacttattccg |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37531553 |
ttctccaagctcttcatcataaacatggaattgtcttgttgatacaaacatataaatatctatgttaccgttgtattgtgggcagatacgacttattccg |
37531652 |
T |
|
| Q |
408 |
aaaagagagaaaaataaacacaatactacataactcatggttgatcctacaaacacatccattcaaatacagagcaattacataaaccttattaacctcc |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37531653 |
aaaagagagaaaaataaacacaatactacataactcatggttgatcctacaaacacatccattcaaatacagagcaattacataaaccttattaacctcc |
37531752 |
T |
|
| Q |
508 |
tcaatatttcccc |
520 |
Q |
| |
|
||||||||||||| |
|
|
| T |
37531753 |
tcaatatttcccc |
37531765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University