View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5569-Insertion-7 (Length: 475)

Name: NF5569-Insertion-7
Description: NF5569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5569-Insertion-7
NF5569-Insertion-7
[»] chr4 (23 HSPs)
chr4 (8-475)||(6927320-6927795)
chr4 (210-260)||(25885826-25885876)
chr4 (91-146)||(24193466-24193521)
chr4 (206-261)||(27043882-27043937)
chr4 (206-260)||(24160953-24161007)
chr4 (210-256)||(42321936-42321982)
chr4 (211-261)||(49219107-49219157)
chr4 (210-259)||(47119019-47119068)
chr4 (210-254)||(13949903-13949947)
chr4 (210-261)||(26883962-26884013)
chr4 (210-260)||(437485-437535)
chr4 (210-260)||(3175918-3175968)
chr4 (210-260)||(29263337-29263387)
chr4 (210-260)||(51630078-51630128)
chr4 (210-260)||(52746893-52746943)
chr4 (206-259)||(21157731-21157784)
chr4 (343-379)||(32071968-32072005)
chr4 (211-260)||(40174531-40174580)
chr4 (93-146)||(41162187-41162240)
chr4 (210-259)||(47946165-47946214)
chr4 (212-285)||(50004172-50004245)
chr4 (330-382)||(52169945-52169998)
chr4 (204-260)||(11389487-11389543)
[»] scaffold0590 (1 HSPs)
scaffold0590 (102-187)||(1166-1252)
[»] scaffold0275 (1 HSPs)
scaffold0275 (102-187)||(2723-2809)
[»] scaffold0024 (1 HSPs)
scaffold0024 (210-261)||(27543-27594)
[»] chr6 (20 HSPs)
chr6 (205-261)||(2112163-2112218)
chr6 (210-261)||(28660812-28660863)
chr6 (210-260)||(4006681-4006731)
chr6 (214-260)||(7485121-7485167)
chr6 (210-260)||(9093609-9093659)
chr6 (210-255)||(11363426-11363471)
chr6 (212-260)||(5623125-5623173)
chr6 (205-261)||(31671126-31671182)
chr6 (206-257)||(9732439-9732490)
chr6 (210-260)||(415271-415321)
chr6 (210-260)||(1402963-1403013)
chr6 (206-260)||(2117366-2117420)
chr6 (206-248)||(22742329-22742371)
chr6 (206-260)||(24626258-24626312)
chr6 (210-260)||(29274282-29274332)
chr6 (210-259)||(5550099-5550148)
chr6 (103-187)||(8349756-8349841)
chr6 (343-386)||(7351592-7351636)
chr6 (210-250)||(24836262-24836302)
chr6 (205-260)||(33817824-33817880)
[»] chr3 (24 HSPs)
chr3 (204-256)||(3467445-3467497)
chr3 (206-259)||(22214735-22214788)
chr3 (210-285)||(14145879-14145954)
chr3 (210-260)||(10101529-10101579)
chr3 (210-260)||(10212454-10212504)
chr3 (210-260)||(36783387-36783437)
chr3 (213-285)||(21367637-21367709)
chr3 (212-260)||(33405220-33405268)
chr3 (210-258)||(48397613-48397661)
chr3 (213-260)||(1217853-1217900)
chr3 (102-184)||(21862271-21862354)
chr3 (210-260)||(2318611-2318661)
chr3 (117-170)||(13804695-13804748)
chr3 (210-243)||(15304417-15304450)
chr3 (91-184)||(20874399-20874489)
chr3 (213-258)||(35450560-35450605)
chr3 (210-259)||(44061077-44061126)
chr3 (210-263)||(48323788-48323841)
chr3 (364-397)||(48364823-48364856)
chr3 (343-394)||(20173803-20173855)
chr3 (210-258)||(32555036-32555084)
chr3 (348-396)||(36139986-36140034)
chr3 (216-260)||(41057011-41057055)
chr3 (210-258)||(48364934-48364982)
[»] chr2 (28 HSPs)
chr2 (213-260)||(35755555-35755602)
chr2 (210-260)||(11513865-11513915)
chr2 (102-187)||(31461330-31461416)
chr2 (210-260)||(33942117-33942167)
chr2 (108-187)||(11393747-11393827)
chr2 (108-187)||(11410408-11410488)
chr2 (206-260)||(15377728-15377782)
chr2 (106-160)||(17221660-17221714)
chr2 (214-260)||(18066099-18066145)
chr2 (210-260)||(29300612-29300662)
chr2 (205-258)||(9395092-9395145)
chr2 (213-258)||(9750916-9750961)
chr2 (213-257)||(42907329-42907373)
chr2 (211-258)||(3673775-3673822)
chr2 (211-258)||(33944573-33944620)
chr2 (210-261)||(43199381-43199432)
chr2 (214-260)||(1625871-1625917)
chr2 (210-260)||(5043613-5043663)
chr2 (210-260)||(33256707-33256757)
chr2 (210-260)||(40145429-40145479)
chr2 (210-260)||(42592306-42592356)
chr2 (210-259)||(4550744-4550793)
chr2 (211-256)||(37766766-37766811)
chr2 (343-394)||(1830144-1830196)
chr2 (343-382)||(8017539-8017579)
chr2 (210-258)||(11863705-11863753)
chr2 (210-258)||(29316830-29316878)
chr2 (210-254)||(43199852-43199896)
[»] chr8 (25 HSPs)
chr8 (210-260)||(34770859-34770909)
chr8 (210-260)||(42597368-42597418)
chr8 (211-260)||(447364-447413)
chr8 (91-187)||(4558679-4558776)
chr8 (211-260)||(7918826-7918875)
chr8 (205-260)||(6864512-6864567)
chr8 (210-257)||(16210942-16210989)
chr8 (210-260)||(778356-778406)
chr8 (119-183)||(5226511-5226576)
chr8 (210-258)||(773296-773344)
chr8 (210-258)||(787790-787838)
chr8 (224-260)||(7645959-7645995)
chr8 (210-260)||(12361159-12361209)
chr8 (210-260)||(35374426-35374476)
chr8 (206-256)||(39561598-39561648)
chr8 (210-260)||(41336698-41336748)
chr8 (218-260)||(43704431-43704473)
chr8 (86-147)||(7026607-7026668)
chr8 (93-158)||(12972739-12972804)
chr8 (210-247)||(42237488-42237525)
chr8 (210-258)||(2093246-2093294)
chr8 (343-382)||(4560607-4560647)
chr8 (224-260)||(9834842-9834878)
chr8 (204-260)||(27728074-27728130)
chr8 (104-187)||(39392753-39392837)
[»] scaffold0072 (1 HSPs)
scaffold0072 (94-147)||(4856-4909)
[»] chr1 (25 HSPs)
chr1 (212-260)||(7218127-7218175)
chr1 (212-260)||(25006087-25006135)
chr1 (213-260)||(40394938-40394985)
chr1 (212-290)||(473133-473211)
chr1 (206-260)||(10581130-10581184)
chr1 (210-260)||(27738233-27738283)
chr1 (210-260)||(30371115-30371165)
chr1 (85-147)||(48133072-48133134)
chr1 (210-260)||(49517037-49517087)
chr1 (210-259)||(49557108-49557157)
chr1 (204-260)||(5592738-5592794)
chr1 (216-260)||(37295771-37295815)
chr1 (212-256)||(52059856-52059900)
chr1 (213-260)||(17269220-17269267)
chr1 (210-285)||(31517768-31517843)
chr1 (205-260)||(49888729-49888784)
chr1 (214-260)||(5592019-5592065)
chr1 (210-260)||(28467360-28467410)
chr1 (210-260)||(36070217-36070267)
chr1 (211-260)||(9656618-9656667)
chr1 (204-261)||(30257644-30257701)
chr1 (216-256)||(5756743-5756783)
chr1 (210-290)||(24915074-24915154)
chr1 (96-132)||(26184641-26184677)
chr1 (212-260)||(34952184-34952232)
[»] chr7 (17 HSPs)
chr7 (214-261)||(25296955-25297002)
chr7 (210-260)||(1417231-1417281)
chr7 (210-260)||(9527143-9527193)
chr7 (211-260)||(17989076-17989125)
chr7 (211-272)||(30496672-30496733)
chr7 (210-261)||(22296280-22296331)
chr7 (210-285)||(30456478-30456553)
chr7 (210-285)||(40689014-40689089)
chr7 (210-257)||(45813236-45813283)
chr7 (343-380)||(19624282-19624320)
chr7 (210-260)||(27548230-27548280)
chr7 (211-257)||(28340452-28340498)
chr7 (210-256)||(45777228-45777274)
chr7 (206-260)||(47046161-47046215)
chr7 (210-255)||(30180018-30180063)
chr7 (211-255)||(13960884-13960928)
chr7 (213-257)||(47177606-47177650)
[»] chr5 (14 HSPs)
chr5 (210-285)||(9202776-9202851)
chr5 (211-261)||(4855666-4855716)
chr5 (210-260)||(12595793-12595843)
chr5 (210-290)||(12425538-12425618)
chr5 (92-186)||(26516180-26516275)
chr5 (213-260)||(41957504-41957551)
chr5 (206-261)||(42646878-42646933)
chr5 (210-260)||(10272484-10272534)
chr5 (210-248)||(10363717-10363755)
chr5 (210-260)||(32059642-32059692)
chr5 (206-260)||(34205202-34205256)
chr5 (211-260)||(41534410-41534458)
chr5 (211-255)||(15905563-15905607)
chr5 (84-187)||(35135754-35135858)
[»] scaffold0091 (1 HSPs)
scaffold0091 (119-183)||(5928-5993)
[»] scaffold0103 (1 HSPs)
scaffold0103 (211-247)||(51536-51572)


Alignment Details
Target: chr4 (Bit Score: 399; Significance: 0; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 8 - 475
Target Start/End: Complemental strand, 6927795 - 6927320
Alignment:
Q  8 ttacaaagttggttactactagttagttcattaagctcttcataaataggagcatattaagtcattcactatcttttagaccctgtttggacacacaact 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6927795 ttacaaagttggttactactagttagttcattaagctcttcataaataggagcatattaagtcattcactatcttttagaccctgtttggacacacaact 6927696  T
Q  108 taattgagcacttatagcataaacgtctatcatttaagtgtttaagtataaacactttctatacaaaagataaaataaagnnnnnnnnnnnggaggaaaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||||    
T  6927695 taattgagcacttatagcataaacgtctatcatttaagtgtttaagtataaacactttctatacaaaagataaaataaagtttttttt---ggaggaaaa 6927599  T
Q  208 aggataaaataaagttaaattgttttcatgtaaactataagttgttttcataaattgtctcggatcacttatgaaaat-----------tagtttgtaga 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||    
T  6927598 aggataaaataaagttaaattgttttcatgtaaactataagttgttttcataaattgtctcggatcacttatgaaaatgagttgaaaattagtttgtaga 6927499  T
Q  297 gacatgttataaacggttaccataaaatattccaaacactctcacaacaagtgcttatgtcaatagaaaactcaaataagtcaatctaaaaaggccctta 396  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  6927498 gacatgttataaacggttaccataaaatattccaaacactctcacaacaagtgcttatgtcaatagaaaactcaaataagtcaatccaaaaaggccctta 6927399  T
Q  397 atcaatcaaaatgttacgttttcagccagaaaaggttgccataaaatcttgctaaagcctattatctctatccctcaca 475  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6927398 atcaatcaaaatgttacgttttcagccagaaaaggttgccataaaatcttgctaaagcctattatctctatccctcaca 6927320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 25885826 - 25885876
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 260  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  25885826 gataaaataaagttaaattgttttcgtgtaagctataagttgttttcataa 25885876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 91 - 146
Target Start/End: Original strand, 24193466 - 24193521
Alignment:
Q  91 tgtttggacacacaacttaattgagcacttatagcataaacgtctatcatttaagt 146  Q
    |||||||| | |||||||||||||||||||||||||||||||  |||||| |||||    
T  24193466 tgtttggataaacaacttaattgagcacttatagcataaacgcttatcatataagt 24193521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 206 - 261
Target Start/End: Complemental strand, 27043937 - 27043882
Alignment:
Q  206 aaaggataaaataaagttaaattgttttcatgtaaactataagttgttttcataaa 261  Q
    ||||||||||||||||||||||||||||| | ||| ||||||| |||||| |||||    
T  27043937 aaaggataaaataaagttaaattgttttcgtataagctataagatgtttttataaa 27043882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 206 - 260
Target Start/End: Original strand, 24160953 - 24161007
Alignment:
Q  206 aaaggataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 260  Q
    |||||||||||| |||||||||| ||||||||||  ||||||||||| |||||||    
T  24160953 aaaggataaaatcaagttaaattattttcatgtaggctataagttgtgttcataa 24161007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 256
Target Start/End: Complemental strand, 42321982 - 42321936
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaactataagttgttttc 256  Q
    ||||||||||||| ||||||||||||| |||| ||||||||||||||    
T  42321982 gataaaataaagtcaaattgttttcatataaattataagttgttttc 42321936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 211 - 261
Target Start/End: Original strand, 49219107 - 49219157
Alignment:
Q  211 ataaaataaagttaaattgttttcatgtaaactataagttgttttcataaa 261  Q
    |||||||||||| ||||| ||||||| ||| ||||||||||||||||||||    
T  49219107 ataaaataaagtcaaattattttcatataagctataagttgttttcataaa 49219157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 210 - 259
Target Start/End: Complemental strand, 47119068 - 47119019
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaactataagttgttttcata 259  Q
    ||||||| ||||||||||||||||||| ||| ||||||||||| ||||||    
T  47119068 gataaaacaaagttaaattgttttcatataagctataagttgtattcata 47119019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 210 - 254
Target Start/End: Complemental strand, 13949947 - 13949903
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaactataagttgttt 254  Q
    ||||||||||||| ||||||||||||| ||| |||||||||||||    
T  13949947 gataaaataaagtcaaattgttttcatataagctataagttgttt 13949903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 261
Target Start/End: Original strand, 26883962 - 26884013
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataaa 261  Q
    |||||||| |||||||||||||||||| ||| |||||||| |||||| ||||    
T  26883962 gataaaatgaagttaaattgttttcatataagctataagtcgttttcgtaaa 26884013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 437535 - 437485
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 260  Q
    ||||||||||||||||||||| ||||| |||  | ||||||||||||||||    
T  437535 gataaaataaagttaaattgtgttcatataagttttaagttgttttcataa 437485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 3175918 - 3175968
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 260  Q
    ||||||||||||| |||||||||||| ||||  |||||| |||||||||||    
T  3175918 gataaaataaagtcaaattgttttcaagtaagttataagctgttttcataa 3175968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 29263337 - 29263387
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 260  Q
    ||||||||||||||| ||||||||||  ||| | |||||||||||||||||    
T  29263337 gataaaataaagttacattgttttcaaataagcgataagttgttttcataa 29263387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 51630078 - 51630128
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 260  Q
    |||||||||||||||||||||||| || ||| ||||||| | |||||||||    
T  51630078 gataaaataaagttaaattgttttgatataagctataagctattttcataa 51630128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 52746943 - 52746893
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 260  Q
    ||||||||||||||||||||||||  ||||| | ||||| |||||||||||    
T  52746943 gataaaataaagttaaattgtttttgtgtaagccataagctgttttcataa 52746893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 259
Target Start/End: Original strand, 21157731 - 21157784
Alignment:
Q  206 aaaggataaaataaagttaaattgttttcatgtaaactataagttgttttcata 259  Q
    |||| ||||| |||||| ||| ||||||||||||| ||||||| ||||||||||    
T  21157731 aaagtataaactaaagtcaaactgttttcatgtaagctataagatgttttcata 21157784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 379
Target Start/End: Original strand, 32071968 - 32072005
Alignment:
Q  343 acaagtgcttatgtcaataga-aaactcaaataagtca 379  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  32071968 acaagtgcttatgtcaatagataaactcaaataagtca 32072005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 40174531 - 40174580
Alignment:
Q  211 ataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 260  Q
    ||||| ||||||||||||||||||||  || ||||||| |||||||||||    
T  40174531 ataaattaaagttaaattgttttcataaaagctataagctgttttcataa 40174580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 146
Target Start/End: Complemental strand, 41162240 - 41162187
Alignment:
Q  93 tttggacacacaacttaattgagcacttatagcataaacgtctatcatttaagt 146  Q
    |||||| | ||||||||||| |||||||||| ||||| ||| ||||||||||||    
T  41162240 tttggataaacaacttaattaagcacttataacataagcgtttatcatttaagt 41162187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 259
Target Start/End: Original strand, 47946165 - 47946214
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaactataagttgttttcata 259  Q
    |||||||| |||||||||||||||| | ||| |||||| |||||||||||    
T  47946165 gataaaatgaagttaaattgttttcgtataagctataaattgttttcata 47946214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 285
Target Start/End: Complemental strand, 50004245 - 50004172
Alignment:
Q  212 taaaataaagttaaattgttttcatgtaaactataagttgttttcataaattgtctcggatcacttatgaaaat 285  Q
    |||| |||||||||||||||||||| ||||| || || ||||||| ||| || ||| |||  ||||||||||||    
T  50004245 taaattaaagttaaattgttttcatataaacaatgagctgttttcctaagttatcttggagaacttatgaaaat 50004172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 382
Target Start/End: Complemental strand, 52169998 - 52169945
Alignment:
Q  330 aaacactctcacaacaagtgcttatgtcaataga-aaactcaaataagtcaatc 382  Q
    ||||| || ||| |||||||||||||| |||||| |||||||||||||||||||    
T  52169998 aaacagtcccaccacaagtgcttatgtaaatagataaactcaaataagtcaatc 52169945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 204 - 260
Target Start/End: Original strand, 11389487 - 11389543
Alignment:
Q  204 aaaaaggataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 260  Q
    ||||| |||||| |||||||||| |||||| || ||||||||||||  |||||||||    
T  11389487 aaaaaagataaagtaaagttaaactgttttaatataaactataagtcattttcataa 11389543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 102 - 187
Target Start/End: Complemental strand, 1252 - 1166
Alignment:
Q  102 acaacttaattgagcacttatagcataaacgtctatcatttaagtgtttaagtataaacactttctat-acaaaagataaaataaag 187  Q
    ||||||||||| || |||||||||||||||||||||||| |||||| ||| |||||| |  ||||||| ||||||||||||||||||    
T  1252 acaacttaattaagtacttatagcataaacgtctatcatataagtgcttatgtataagctatttctataacaaaagataaaataaag 1166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 102 - 187
Target Start/End: Original strand, 2723 - 2809
Alignment:
Q  102 acaacttaattgagcacttatagcataaacgtctatcatttaagtgtttaagtataaacactttctat-acaaaagataaaataaag 187  Q
    ||||||||||| || |||||||||||||||||||||||| |||||| ||| |||||| |  ||||||| ||||||||||||||||||    
T  2723 acaacttaattaagtacttatagcataaacgtctatcatataagtgcttatgtataagctatttctataacaaaagataaaataaag 2809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 210 - 261
Target Start/End: Original strand, 27543 - 27594
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataaa 261  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  27543 gataaaataaagtcaaattgttttcatataaactataagttgttttcataaa 27594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 205 - 261
Target Start/End: Original strand, 2112163 - 2112218
Alignment:
Q  205 aaaaggataaaataaagttaaattgttttcatgtaaactataagttgttttcataaa 261  Q
    |||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  2112163 aaaaagataaaataaagttaaattgttt-catataaactataagttgttttcataaa 2112218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 210 - 261
Target Start/End: Complemental strand, 28660863 - 28660812
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataaa 261  Q
    ||||||||||||||||||| ||||||| |||| ||||| |||||||||||||    
T  28660863 gataaaataaagttaaattattttcatataaattataaattgttttcataaa 28660812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 4006681 - 4006731
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 260  Q
    ||||||||||||| |||||||||| || ||| |||||||||||||||||||    
T  4006681 gataaaataaagtcaaattgtttttatataagctataagttgttttcataa 4006731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 214 - 260
Target Start/End: Complemental strand, 7485167 - 7485121
Alignment:
Q  214 aaataaagttaaattgttttcatgtaaactataagttgttttcataa 260  Q
    ||||||||||||||| ||||||| ||| |||||||||||||||||||    
T  7485167 aaataaagttaaatttttttcatataagctataagttgttttcataa 7485121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 9093659 - 9093609
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 260  Q
    ||||||||||||||||||||||||| | ||| ||||||| |||||||||||    
T  9093659 gataaaataaagttaaattgttttcgtataagctataagctgttttcataa 9093609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 210 - 255
Target Start/End: Complemental strand, 11363471 - 11363426
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaactataagttgtttt 255  Q
    ||||||||||||||||||| |||||||||||  |||||||||||||    
T  11363471 gataaaataaagttaaattattttcatgtaagttataagttgtttt 11363426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 212 - 260
Target Start/End: Original strand, 5623125 - 5623173
Alignment:
Q  212 taaaataaagttaaattgttttcatgtaaactataagttgttttcataa 260  Q
    ||||||||||  |||| |||||||| |||||||||||||||||||||||    
T  5623125 taaaataaagccaaatagttttcatataaactataagttgttttcataa 5623173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 205 - 261
Target Start/End: Complemental strand, 31671182 - 31671126
Alignment:
Q  205 aaaaggataaaataaagttaaattgttttcatgtaaactataagttgttttcataaa 261  Q
    |||| ||||||| ||||||||||||||||||| ||| ||||||| ||||||| ||||    
T  31671182 aaaaagataaaacaaagttaaattgttttcatataagctataagctgttttcgtaaa 31671126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 257
Target Start/End: Original strand, 9732439 - 9732490
Alignment:
Q  206 aaaggataaaataaagttaaattgttttcatgtaaactataagttgttttca 257  Q
    |||||||||||| |||| |||||||||||||| ||  |||||||||||||||    
T  9732439 aaaggataaaattaagtcaaattgttttcatgcaaggtataagttgttttca 9732490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 415271 - 415321
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 260  Q
    ||||||| ||||||||||||||||| | ||| |||||||||||||| ||||    
T  415271 gataaaacaaagttaaattgttttcgtataagctataagttgtttttataa 415321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 1402963 - 1403013
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 260  Q
    ||||||||||||||||| | ||||||| ||| |||||| ||||||||||||    
T  1402963 gataaaataaagttaaactattttcatataagctataaattgttttcataa 1403013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 206 - 260
Target Start/End: Original strand, 2117366 - 2117420
Alignment:
Q  206 aaaggataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 260  Q
    ||||||||||| ||||| ||| | ||||||| ||| |||||||||||||||||||    
T  2117366 aaaggataaaacaaagtcaaactattttcatataatctataagttgttttcataa 2117420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 206 - 248
Target Start/End: Original strand, 22742329 - 22742371
Alignment:
Q  206 aaaggataaaataaagttaaattgttttcatgtaaactataag 248  Q
    ||||||||||||||||| ||||||||||||| ||| |||||||    
T  22742329 aaaggataaaataaagtcaaattgttttcatataagctataag 22742371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 206 - 260
Target Start/End: Original strand, 24626258 - 24626312
Alignment:
Q  206 aaaggataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 260  Q
    ||||||||||| ||||||||||||||||  | ||  |||||||||||||||||||    
T  24626258 aaaggataaaacaaagttaaattgtttttgtatattctataagttgttttcataa 24626312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 29274332 - 29274282
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 260  Q
    ||||||||||||| ||||||||||||| ||| ||||||  |||||||||||    
T  29274332 gataaaataaagtcaaattgttttcatataagctataaactgttttcataa 29274282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 259
Target Start/End: Original strand, 5550099 - 5550148
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaactataagttgttttcata 259  Q
    ||||| ||||||| ||||||||||||| ||| ||||||| ||||||||||    
T  5550099 gataacataaagtcaaattgttttcatataagctataagctgttttcata 5550148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 187
Target Start/End: Complemental strand, 8349841 - 8349756
Alignment:
Q  103 caacttaattgagcacttatagcataaacgtctatcatttaagtgtttaagtataaacactttctat-acaaaagataaaataaag 187  Q
    |||||||||| ||| |||||||||||| |   |||||| |||||||||  ||||||||  ||||| | ||||||||||||||||||    
T  8349841 caacttaattaagcgcttatagcataaccacttatcatataagtgtttgtgtataaactatttctctaacaaaagataaaataaag 8349756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 343 - 386
Target Start/End: Complemental strand, 7351636 - 7351592
Alignment:
Q  343 acaagtgcttatgtcaataga-aaactcaaataagtcaatctaaa 386  Q
    |||||||||||||||| |||| |||||||||||||||||| ||||    
T  7351636 acaagtgcttatgtcagtagataaactcaaataagtcaatttaaa 7351592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 250
Target Start/End: Complemental strand, 24836302 - 24836262
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaactataagtt 250  Q
    ||||||||||||| ||||||||||| | |||||||||||||    
T  24836302 gataaaataaagtcaaattgttttcgtataaactataagtt 24836262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 205 - 260
Target Start/End: Complemental strand, 33817880 - 33817824
Alignment:
Q  205 aaaaggataaaataaagttaaattgttttcatgtaaa-ctataagttgttttcataa 260  Q
    |||| ||||||||||||| ||  ||||||||||||||  ||||||||||||||||||    
T  33817880 aaaaagataaaataaagtaaacctgttttcatgtaaagttataagttgttttcataa 33817824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 204 - 256
Target Start/End: Complemental strand, 3467497 - 3467445
Alignment:
Q  204 aaaaaggataaaataaagttaaattgttttcatgtaaactataagttgttttc 256  Q
    ||||||||||||||||||| ||||||||||||| || ||||||||||||||||    
T  3467497 aaaaaggataaaataaagtcaaattgttttcatatagactataagttgttttc 3467445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 206 - 259
Target Start/End: Complemental strand, 22214788 - 22214735
Alignment:
Q  206 aaaggataaaataaagttaaattgttttcatgtaaactataagttgttttcata 259  Q
    ||||||||||||||||| ||||||| ||||| ||| ||||||||||||||||||    
T  22214788 aaaggataaaataaagtgaaattgtattcatataacctataagttgttttcata 22214735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 210 - 285
Target Start/End: Original strand, 14145879 - 14145954
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataaattgtctcggatcacttatgaaaat 285  Q
    ||||||||||||||||||||||||| | ||  ||||||||| |||||||||  | ||| |||| ||||||||||||    
T  14145879 gataaaataaagttaaattgttttcgtatatgctataagttattttcataagctatcttggattacttatgaaaat 14145954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 10101579 - 10101529
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 260  Q
    ||||||||||||||||||||||||||| |||  || |||||||||||||||    
T  10101579 gataaaataaagttaaattgttttcatataagataaaagttgttttcataa 10101529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 10212504 - 10212454
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 260  Q
    ||||||||||||||||||||||||||| |||  || |||||||||||||||    
T  10212504 gataaaataaagttaaattgttttcatataagataaaagttgttttcataa 10212454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 36783437 - 36783387
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 260  Q
    ||||||||||||| ||||||||||||| |||||||| || |||||||||||    
T  36783437 gataaaataaagtaaaattgttttcatataaactattagctgttttcataa 36783387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 285
Target Start/End: Original strand, 21367637 - 21367709
Alignment:
Q  213 aaaataaagttaaattgttttcatgtaaactataagttgttttcataaattgtctcggatcacttatgaaaat 285  Q
    |||||||||||||||||||||| | |||  ||||||||||||||||||  | ||| |||  ||||||||||||    
T  21367637 aaaataaagttaaattgttttcgtataatgtataagttgttttcataagctatcttggagaacttatgaaaat 21367709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 212 - 260
Target Start/End: Complemental strand, 33405268 - 33405220
Alignment:
Q  212 taaaataaagttaaattgttttcatgtaaactataagttgttttcataa 260  Q
    |||||||||||||| |||||||||| ||| ||||||| |||||||||||    
T  33405268 taaaataaagttaatttgttttcatataagctataagctgttttcataa 33405220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 210 - 258
Target Start/End: Original strand, 48397613 - 48397661
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaactataagttgttttcat 258  Q
    ||||||||||||| |||||||||| || ||| |||||||||||||||||    
T  48397613 gataaaataaagtcaaattgtttttatttaagctataagttgttttcat 48397661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 260
Target Start/End: Complemental strand, 1217900 - 1217853
Alignment:
Q  213 aaaataaagttaaattgttttcatgtaaactataagttgttttcataa 260  Q
    ||||| ||||||||||||||||||||||  |||||| |||||||||||    
T  1217900 aaaatgaagttaaattgttttcatgtaagttataagctgttttcataa 1217853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 184
Target Start/End: Complemental strand, 21862354 - 21862271
Alignment:
Q  102 acaacttaattgagcacttatagcataaacgtctatcatttaagtgtttaagtataaacactttcta-tacaaaagataaaata 184  Q
    |||||| |||| |||||||||||||||||||| |||| | |||||| ||  |||||| |  |||||| ||||||||||||||||    
T  21862354 acaactcaattaagcacttatagcataaacgtttatcttataagtgcttgcgtataagctgtttctattacaaaagataaaata 21862271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 2318611 - 2318661
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 260  Q
    |||||||| || | ||||||||||||| |||||||||||||||||| ||||    
T  2318611 gataaaatcaaatcaaattgttttcatataaactataagttgtttttataa 2318661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 170
Target Start/End: Original strand, 13804695 - 13804748
Alignment:
Q  117 acttatagcataaacgtctatcatttaagtgtttaagtataaacactttctata 170  Q
    ||||||||||||||||   |||||||||||||||| ||||||||  ||||||||    
T  13804695 acttatagcataaacgctgatcatttaagtgtttatgtataaactatttctata 13804748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 243
Target Start/End: Complemental strand, 15304450 - 15304417
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaact 243  Q
    ||||||||||||||||||||||||||| ||||||    
T  15304450 gataaaataaagttaaattgttttcatataaact 15304417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 184
Target Start/End: Complemental strand, 20874489 - 20874399
Alignment:
Q  91 tgtttggacacacaacttaattgagcacttatagcataaacgtctatcatttaagtgtttaagtataaacactttctat-acaaaagataaaata 184  Q
    |||||||| | ||||||||||| ||||||||||||||||| |  |||||| ||||||    |||||||||  ||||||| ||||||| |||||||    
T  20874489 tgtttggataaacaacttaattaagcacttatagcataaatgcatatcatataagtg----agtataaactatttctatgacaaaagctaaaata 20874399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 258
Target Start/End: Original strand, 35450560 - 35450605
Alignment:
Q  213 aaaataaagttaaattgttttcatgtaaactataagttgttttcat 258  Q
    |||||||||| ||||||||||| | ||| |||||||||||||||||    
T  35450560 aaaataaagtaaaattgttttcttataagctataagttgttttcat 35450605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 259
Target Start/End: Complemental strand, 44061126 - 44061077
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaactataagttgttttcata 259  Q
    |||||||||| |||||||||||||  | ||| ||||||||||||||||||    
T  44061126 gataaaataaggttaaattgtttttctataagctataagttgttttcata 44061077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 263
Target Start/End: Original strand, 48323788 - 48323841
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataaatt 263  Q
    ||||| ||||||| ||||||||||  ||||| |||||| |||||||||||||||    
T  48323788 gataatataaagtcaaattgtttttctgtaagctataaattgttttcataaatt 48323841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 397
Target Start/End: Complemental strand, 48364856 - 48364823
Alignment:
Q  364 aaactcaaataagtcaatctaaaaaggcccttaa 397  Q
    ||||||||||||||||||||||| ||||||||||    
T  48364856 aaactcaaataagtcaatctaaataggcccttaa 48364823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 343 - 394
Target Start/End: Complemental strand, 20173855 - 20173803
Alignment:
Q  343 acaagtgcttatgtcaatagaaaa-ctcaaataagtcaatctaaaaaggccct 394  Q
    |||||||||||| |||||||| |  |||||||||||||||| |||||||||||    
T  20173855 acaagtgcttatttcaatagatacgctcaaataagtcaatccaaaaaggccct 20173803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 258
Target Start/End: Complemental strand, 32555084 - 32555036
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaactataagttgttttcat 258  Q
    ||||||||||||| ||||| ||||| | ||| |||||||||||||||||    
T  32555084 gataaaataaagtcaaattattttcctataagctataagttgttttcat 32555036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 348 - 396
Target Start/End: Original strand, 36139986 - 36140034
Alignment:
Q  348 tgcttatgtcaatagaaaactcaaataagtcaatctaaaaaggccctta 396  Q
    |||||||| ||||||| |||||||||||||||||  ||| |||||||||    
T  36139986 tgcttatgacaatagataactcaaataagtcaattcaaacaggccctta 36140034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 260
Target Start/End: Original strand, 41057011 - 41057055
Alignment:
Q  216 ataaagttaaattgttttcatgtaaactataagttgttttcataa 260  Q
    ||||| |||| |||||||||| ||| |||||||||||||||||||    
T  41057011 ataaaattaatttgttttcatataagctataagttgttttcataa 41057055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 258
Target Start/End: Complemental strand, 48364982 - 48364934
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaactataagttgttttcat 258  Q
    ||||||||||||| ||||||||||||| ||  | |||||||||||||||    
T  48364982 gataaaataaagtcaaattgttttcatttacgccataagttgttttcat 48364934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 213 - 260
Target Start/End: Complemental strand, 35755602 - 35755555
Alignment:
Q  213 aaaataaagttaaattgttttcatgtaaactataagttgttttcataa 260  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||    
T  35755602 aaaataaagtcaaattgttttcatgtaagctataagttgttttcataa 35755555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 11513865 - 11513915
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 260  Q
    ||||||||||||| ||||||||||||| ||| |||||||||||||||||||    
T  11513865 gataaaataaagtcaaattgttttcatataagctataagttgttttcataa 11513915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 102 - 187
Target Start/End: Original strand, 31461330 - 31461416
Alignment:
Q  102 acaacttaattgagcacttatagcataaacgtctatcatttaagtgtttaagtataaacactttctat-acaaaagataaaataaag 187  Q
    ||||||||||| ||||||| |||||||||||| |||||| |||||| |||  ||||| |  ||||||| ||||||||||||||||||    
T  31461330 acaacttaattaagcacttctagcataaacgtatatcatataagtggttatatataagctatttctataacaaaagataaaataaag 31461416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 33942117 - 33942167
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 260  Q
    ||||||||||||| ||| ||||||||||||| |||||||||||||||||||    
T  33942117 gataaaataaagtcaaactgttttcatgtaagctataagttgttttcataa 33942167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 108 - 187
Target Start/End: Complemental strand, 11393827 - 11393747
Alignment:
Q  108 taattgagcacttatagcataaacgtctatcatttaagtgtttaagtataaacactttctata-caaaagataaaataaag 187  Q
    ||||| |||||||||||||||||| | ||||||||||||| ||| |||||| |  |||||||| ||||||||| |||||||    
T  11393827 taattaagcacttatagcataaacatttatcatttaagtgcttatgtataagctatttctataccaaaagatacaataaag 11393747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 108 - 187
Target Start/End: Complemental strand, 11410488 - 11410408
Alignment:
Q  108 taattgagcacttatagcataaacgtctatcatttaagtgtttaagtataaacactttctata-caaaagataaaataaag 187  Q
    ||||| |||||||||||||||||| | ||||||||||||| ||| |||||| |  |||||||| ||||||||| |||||||    
T  11410488 taattaagcacttatagcataaacatttatcatttaagtgcttatgtataagctatttctataccaaaagatacaataaag 11410408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 206 - 260
Target Start/End: Original strand, 15377728 - 15377782
Alignment:
Q  206 aaaggataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 260  Q
    ||||||||||||||||||| ||||||||||| |||  |||||| |||||||||||    
T  15377728 aaaggataaaataaagttagattgttttcatataagttataagctgttttcataa 15377782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 106 - 160
Target Start/End: Complemental strand, 17221714 - 17221660
Alignment:
Q  106 cttaattgagcacttatagcataaacgtctatcatttaagtgtttaagtataaac 160  Q
    ||||||| |||||||||||||||| | | ||||||||||||||||| ||||||||    
T  17221714 cttaattaagcacttatagcataagcctttatcatttaagtgtttatgtataaac 17221660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 214 - 260
Target Start/End: Original strand, 18066099 - 18066145
Alignment:
Q  214 aaataaagttaaattgttttcatgtaaactataagttgttttcataa 260  Q
    ||||||||||||||||||||||| ||| ||||||| |||||||||||    
T  18066099 aaataaagttaaattgttttcatataagctataagctgttttcataa 18066145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 29300612 - 29300662
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 260  Q
    |||||||||||| | ||||||||||||||||  ||||||||||||||||||    
T  29300612 gataaaataaaggtgaattgttttcatgtaagttataagttgttttcataa 29300662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 205 - 258
Target Start/End: Original strand, 9395092 - 9395145
Alignment:
Q  205 aaaaggataaaataaagttaaattgttttcatgtaaactataagttgttttcat 258  Q
    |||| |||||||||||| |||||||||||||| ||| ||||||| |||||||||    
T  9395092 aaaaagataaaataaagctaaattgttttcatataatctataagctgttttcat 9395145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 213 - 258
Target Start/End: Original strand, 9750916 - 9750961
Alignment:
Q  213 aaaataaagttaaattgttttcatgtaaactataagttgttttcat 258  Q
    |||||||||||||||||||||| | ||| |||||||||||||||||    
T  9750916 aaaataaagttaaattgttttcttataagctataagttgttttcat 9750961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 257
Target Start/End: Original strand, 42907329 - 42907373
Alignment:
Q  213 aaaataaagttaaattgttttcatgtaaactataagttgttttca 257  Q
    |||||||||||||||||||||| | ||| ||||||||||||||||    
T  42907329 aaaataaagttaaattgttttcgtttaagctataagttgttttca 42907373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 258
Target Start/End: Original strand, 3673775 - 3673822
Alignment:
Q  211 ataaaataaagttaaattgttttcatgtaaactataagttgttttcat 258  Q
    |||||||||||||||||||||||||| |||  |||||||| |||||||    
T  3673775 ataaaataaagttaaattgttttcatataagttataagtttttttcat 3673822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 258
Target Start/End: Original strand, 33944573 - 33944620
Alignment:
Q  211 ataaaataaagttaaattgttttcatgtaaactataagttgttttcat 258  Q
    |||||||||||| ||||||||||||| ||| |||||| ||||||||||    
T  33944573 ataaaataaagtcaaattgttttcatataagctataaattgttttcat 33944620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 261
Target Start/End: Original strand, 43199381 - 43199432
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataaa 261  Q
    ||||||||||||||||||| | ||| | ||| ||||||||||||||||||||    
T  43199381 gataaaataaagttaaattatcttcgtataagctataagttgttttcataaa 43199432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 260
Target Start/End: Original strand, 1625871 - 1625917
Alignment:
Q  214 aaataaagttaaattgttttcatgtaaactataagttgttttcataa 260  Q
    ||||||||||||||||||||| | |||  ||||||||||||||||||    
T  1625871 aaataaagttaaattgttttcgtataagttataagttgttttcataa 1625917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 5043663 - 5043613
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 260  Q
    ||||||||||||| ||| ||||||||| ||| ||| |||||||||||||||    
T  5043663 gataaaataaagtcaaactgttttcatataagctagaagttgttttcataa 5043613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 33256707 - 33256757
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 260  Q
    ||||||||||||| ||| ||||||||| |||||||||||  ||||||||||    
T  33256707 gataaaataaagtcaaactgttttcatataaactataagcagttttcataa 33256757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 40145429 - 40145479
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 260  Q
    ||||||||||||| || ||||||| ||||||  ||||||||||||||||||    
T  40145429 gataaaataaagtcaagttgtttttatgtaagttataagttgttttcataa 40145479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 42592306 - 42592356
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 260  Q
    |||||||| ||||||| |||||||||| ||| ||||||| |||||||||||    
T  42592306 gataaaattaagttaacttgttttcatataagctataagctgttttcataa 42592356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 259
Target Start/End: Original strand, 4550744 - 4550793
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaactataagttgttttcata 259  Q
    |||||||||| || ||  ||||||||| ||||||||||||||||||||||    
T  4550744 gataaaataacgtcaagctgttttcatataaactataagttgttttcata 4550793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 256
Target Start/End: Original strand, 37766766 - 37766811
Alignment:
Q  211 ataaaataaagttaaattgttttcatgtaaactataagttgttttc 256  Q
    |||||||||||| ||| ||||||| | |||||||||||||||||||    
T  37766766 ataaaataaagtcaaaatgttttcgtataaactataagttgttttc 37766811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 343 - 394
Target Start/End: Original strand, 1830144 - 1830196
Alignment:
Q  343 acaagtgcttatgtcaataga-aaactcaaataagtcaatctaaaaaggccct 394  Q
    |||||||||||||||| || | ||||||||||||||||||| ||| |||||||    
T  1830144 acaagtgcttatgtcagtaaataaactcaaataagtcaatccaaacaggccct 1830196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 343 - 382
Target Start/End: Original strand, 8017539 - 8017579
Alignment:
Q  343 acaagtgcttatgtcaataga-aaactcaaataagtcaatc 382  Q
    ||||||||||||||||||||| || ||||||||||||||||    
T  8017539 acaagtgcttatgtcaatagataacctcaaataagtcaatc 8017579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 258
Target Start/End: Complemental strand, 11863753 - 11863705
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaactataagttgttttcat 258  Q
    ||||||||| ||||||||||||||||| |||  |||||| |||||||||    
T  11863753 gataaaatagagttaaattgttttcatataatttataagctgttttcat 11863705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 258
Target Start/End: Complemental strand, 29316878 - 29316830
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaactataagttgttttcat 258  Q
    |||||||||| |||||||||||||||  ||| ||||||| |||||||||    
T  29316878 gataaaataaggttaaattgttttcacataatctataagctgttttcat 29316830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 254
Target Start/End: Complemental strand, 43199896 - 43199852
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaactataagttgttt 254  Q
    ||||||||||||||||||||||||  | ||| |||||||||||||    
T  43199896 gataaaataaagttaaattgtttttgtataagctataagttgttt 43199852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 34770859 - 34770909
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 260  Q
    ||||||||||||| ||||||||||||| ||| |||||||||||||||||||    
T  34770859 gataaaataaagtcaaattgttttcatttaagctataagttgttttcataa 34770909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 42597368 - 42597418
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 260  Q
    ||||||||||||| |||||||||||||| || |||||||||||||||||||    
T  42597368 gataaaataaagtaaaattgttttcatgcaagctataagttgttttcataa 42597418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 211 - 260
Target Start/End: Complemental strand, 447413 - 447364
Alignment:
Q  211 ataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 260  Q
    |||||||||||||| ||||||||||| |||| ||||||||||||||||||    
T  447413 ataaaataaagttacattgttttcatttaaaatataagttgttttcataa 447364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 91 - 187
Target Start/End: Original strand, 4558679 - 4558776
Alignment:
Q  91 tgtttggacacacaacttaattgagcacttatagcataaacgtctatcatttaagtgtttaagtataaacactttctat-acaaaagataaaataaag 187  Q
    |||||||| | |||||||||||  || |||||||||||||||| ||| || |||||||||| |||||| |  ||||||| | ||||||||||||||||    
T  4558679 tgtttggataaacaacttaattacgcgcttatagcataaacgtttattatgtaagtgtttatgtataagctatttctataataaaagataaaataaag 4558776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 211 - 260
Target Start/End: Complemental strand, 7918875 - 7918826
Alignment:
Q  211 ataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 260  Q
    |||||||||||||||||| ||||| ||||| |||||||||||||||||||    
T  7918875 ataaaataaagttaaatttttttcttgtaagctataagttgttttcataa 7918826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 205 - 260
Target Start/End: Complemental strand, 6864567 - 6864512
Alignment:
Q  205 aaaaggataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 260  Q
    |||||||||||||||||| ||| | |||||||||||  ||||||||||||||||||    
T  6864567 aaaaggataaaataaagtcaaactattttcatgtaagttataagttgttttcataa 6864512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 210 - 257
Target Start/End: Complemental strand, 16210989 - 16210942
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaactataagttgttttca 257  Q
    ||||||||||||||| ||||||||||| ||| ||||||||||||||||    
T  16210989 gataaaataaagttacattgttttcatataagctataagttgttttca 16210942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 778356 - 778406
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 260  Q
    ||||||||||||||||||||||||||| | | ||||||| |||||||||||    
T  778356 gataaaataaagttaaattgttttcattttagctataagctgttttcataa 778406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 119 - 183
Target Start/End: Original strand, 5226511 - 5226576
Alignment:
Q  119 ttatagcataaacgtctatcatttaagtgtttaagtataaacactttctat-acaaaagataaaat 183  Q
    ||||||||||||| | |||||| |||||||||| ||||||||| |||| || ||||||||||||||    
T  5226511 ttatagcataaacatttatcatataagtgtttatgtataaacaatttcaataacaaaagataaaat 5226576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 210 - 258
Target Start/End: Original strand, 773296 - 773344
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaactataagttgttttcat 258  Q
    ||||||||||||||||||||||||||| | | ||||||| |||||||||    
T  773296 gataaaataaagttaaattgttttcattttagctataagctgttttcat 773344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 210 - 258
Target Start/End: Original strand, 787790 - 787838
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaactataagttgttttcat 258  Q
    ||||||||||||||||||||||||||| | | ||||||| |||||||||    
T  787790 gataaaataaagttaaattgttttcattttagctataagctgttttcat 787838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 260
Target Start/End: Original strand, 7645959 - 7645995
Alignment:
Q  224 aaattgttttcatgtaaactataagttgttttcataa 260  Q
    ||||||||||||||||| |||||||||||||||||||    
T  7645959 aaattgttttcatgtaagctataagttgttttcataa 7645995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 12361159 - 12361209
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 260  Q
    |||||||| |||| ||||||||||||| ||| ||||||| |||||||||||    
T  12361159 gataaaatgaagtcaaattgttttcatataagctataagctgttttcataa 12361209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 35374476 - 35374426
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 260  Q
    ||||||||||||||||||||||||||| ||| ||||||  || ||||||||    
T  35374476 gataaaataaagttaaattgttttcatataagctataatctgatttcataa 35374426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 206 - 256
Target Start/End: Complemental strand, 39561648 - 39561598
Alignment:
Q  206 aaaggataaaataaagttaaattgttttcatgtaaactataagttgttttc 256  Q
    |||| ||||||||||||  | |||||||||| |||||||||||||||||||    
T  39561648 aaagtataaaataaagtcgatttgttttcatctaaactataagttgttttc 39561598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 41336748 - 41336698
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 260  Q
    ||||||||| ||| ||||||||||||| ||||||| || ||||||||||||    
T  41336748 gataaaatatagtcaaattgttttcatataaactagaacttgttttcataa 41336698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 260
Target Start/End: Complemental strand, 43704473 - 43704431
Alignment:
Q  218 aaagttaaattgttttcatgtaaactataagttgttttcataa 260  Q
    ||||| ||| ||||||||| |||||||||||||||||||||||    
T  43704473 aaagtcaaactgttttcatataaactataagttgttttcataa 43704431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 147
Target Start/End: Original strand, 7026607 - 7026668
Alignment:
Q  86 gaccctgtttggacacacaacttaattgagcacttatagcataaacgtctatcatttaagtg 147  Q
    ||||||||||||| | ||||||||||| |||| ||| ||||||||| | |||||| ||||||    
T  7026607 gaccctgtttggataaacaacttaattaagcatttacagcataaacatttatcatataagtg 7026668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 158
Target Start/End: Original strand, 12972739 - 12972804
Alignment:
Q  93 tttggacacacaacttaattgagcacttatagcataaacgtctatcatttaagtgtttaagtataa 158  Q
    |||||||| ||||||||||| ||| |||||||||||| | | |||||| |||||| ||| ||||||    
T  12972739 tttggacaaacaacttaattaagcgcttatagcataagcatttatcatataagtgcttatgtataa 12972804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 247
Target Start/End: Complemental strand, 42237525 - 42237488
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaactataa 247  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  42237525 gataaaataaagttaaattgttttcatataagctataa 42237488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 258
Target Start/End: Original strand, 2093246 - 2093294
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaactataagttgttttcat 258  Q
    ||||||||||||| |||| |||||| | ||| |||||||||||||||||    
T  2093246 gataaaataaagtcaaatggttttcttttaagctataagttgttttcat 2093294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 343 - 382
Target Start/End: Original strand, 4560607 - 4560647
Alignment:
Q  343 acaagtgcttatgtcaataga-aaactcaaataagtcaatc 382  Q
    ||||||||||||||||||||| || ||||||||||||||||    
T  4560607 acaagtgcttatgtcaatagataagctcaaataagtcaatc 4560647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 224 - 260
Target Start/End: Complemental strand, 9834878 - 9834842
Alignment:
Q  224 aaattgttttcatgtaaactataagttgttttcataa 260  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  9834878 aaattgttttcatataagctataagttgttttcataa 9834842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 204 - 260
Target Start/End: Complemental strand, 27728130 - 27728074
Alignment:
Q  204 aaaaaggataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 260  Q
    ||||| ||||||||||||| ||| | ||||||| |||| ||| ||||||||||||||    
T  27728130 aaaaaagataaaataaagtcaaactattttcatataaagtattagttgttttcataa 27728074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 104 - 187
Target Start/End: Complemental strand, 39392837 - 39392753
Alignment:
Q  104 aacttaattgagcacttatagcataaacgtctatcatttaagtgtttaagtataaacactttctat-acaaaagataaaataaag 187  Q
    ||||||||| |||| |||||||||||  |  |||||| ||||||  || ||||||||  ||||||| ||||||||||||||||||    
T  39392837 aacttaattaagcatttatagcataagtgcttatcatataagtggctatgtataaactatttctataacaaaagataaaataaag 39392753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 94 - 147
Target Start/End: Original strand, 4856 - 4909
Alignment:
Q  94 ttggacacacaacttaattgagcacttatagcataaacgtctatcatttaagtg 147  Q
    ||||||||||||||||||| ||| ||||||||||||| ||||||||| ||||||    
T  4856 ttggacacacaacttaattaagcgcttatagcataaatgtctatcatataagtg 4909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 212 - 260
Target Start/End: Complemental strand, 7218175 - 7218127
Alignment:
Q  212 taaaataaagttaaattgttttcatgtaaactataagttgttttcataa 260  Q
    ||||||||||| ||||||||||||| ||| |||||||||||||||||||    
T  7218175 taaaataaagtcaaattgttttcatataagctataagttgttttcataa 7218127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 212 - 260
Target Start/End: Complemental strand, 25006135 - 25006087
Alignment:
Q  212 taaaataaagttaaattgttttcatgtaaactataagttgttttcataa 260  Q
    ||||||||||| ||||||||||||| ||| |||||||||||||||||||    
T  25006135 taaaataaagtcaaattgttttcatataagctataagttgttttcataa 25006087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 213 - 260
Target Start/End: Complemental strand, 40394985 - 40394938
Alignment:
Q  213 aaaataaagttaaattgttttcatgtaaactataagttgttttcataa 260  Q
    |||| ||||||||||||||||||| |||| ||||||||||||||||||    
T  40394985 aaaaaaaagttaaattgttttcatataaattataagttgttttcataa 40394938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 212 - 290
Target Start/End: Original strand, 473133 - 473211
Alignment:
Q  212 taaaataaagttaaattgttttcatgtaaactataagttgttttcataaattgtctcggatcacttatgaaaattagtt 290  Q
    ||||||||||||||||||||||| ||||  |||||||||||||| |||| || | | |||  |||||||||||| ||||    
T  473133 taaaataaagttaaattgttttcgtgtatgctataagttgtttttataagttctattggagaacttatgaaaataagtt 473211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 206 - 260
Target Start/End: Complemental strand, 10581184 - 10581130
Alignment:
Q  206 aaaggataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 260  Q
    ||||||||||||||||| ||| | ||||||| ||| |||||||||||||||||||    
T  10581184 aaaggataaaataaagtcaaacttttttcatttaagctataagttgttttcataa 10581130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 27738283 - 27738233
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 260  Q
    ||||||||||||| ||||||||||||| ||| |||||| ||||||||||||    
T  27738283 gataaaataaagtcaaattgttttcatataagctataatttgttttcataa 27738233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 30371115 - 30371165
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 260  Q
    ||||||||||| | ||||||||||||| ||| |||||||||||||||||||    
T  30371115 gataaaataaactcaaattgttttcatataagctataagttgttttcataa 30371165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 85 - 147
Target Start/End: Complemental strand, 48133134 - 48133072
Alignment:
Q  85 agaccctgtttggacacacaacttaattgagcacttatagcataaacgtctatcatttaagtg 147  Q
    |||||||||||||| | ||||||||||| ||| |||||||||||||||  |||||| ||||||    
T  48133134 agaccctgtttggatagacaacttaattaagcgcttatagcataaacgcttatcatataagtg 48133072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 49517037 - 49517087
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 260  Q
    ||||||||||||| ||||||||||||| ||| ||||||| |||||||||||    
T  49517037 gataaaataaagtcaaattgttttcatttaagctataagctgttttcataa 49517087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 210 - 259
Target Start/End: Original strand, 49557108 - 49557157
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaactataagttgttttcata 259  Q
    |||||||||||||||||| || ||||| ||| ||||||||||||||||||    
T  49557108 gataaaataaagttaaatagtattcatttaagctataagttgttttcata 49557157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 204 - 260
Target Start/End: Complemental strand, 5592794 - 5592738
Alignment:
Q  204 aaaaaggataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 260  Q
    ||||| |||||||||||||  ||||||| |||| ||| |||||||||||||||||||    
T  5592794 aaaaaagataaaataaagtcgaattgttgtcatataagctataagttgttttcataa 5592738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 216 - 260
Target Start/End: Complemental strand, 37295815 - 37295771
Alignment:
Q  216 ataaagttaaattgttttcatgtaaactataagttgttttcataa 260  Q
    ||||||||||||||||||| | ||| |||||||||||||||||||    
T  37295815 ataaagttaaattgttttcgtttaagctataagttgttttcataa 37295771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 212 - 256
Target Start/End: Original strand, 52059856 - 52059900
Alignment:
Q  212 taaaataaagttaaattgttttcatgtaaactataagttgttttc 256  Q
    ||||||||| | ||||||||||||||||| |||||||||||||||    
T  52059856 taaaataaaatcaaattgttttcatgtaacctataagttgttttc 52059900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 260
Target Start/End: Original strand, 17269220 - 17269267
Alignment:
Q  213 aaaataaagttaaattgttttcatgtaaactataagttgttttcataa 260  Q
    |||||||||| ||||||||||||| ||| | |||||||||||||||||    
T  17269220 aaaataaagtcaaattgttttcatataagcaataagttgttttcataa 17269267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 285
Target Start/End: Complemental strand, 31517843 - 31517768
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataaattgtctcggatcacttatgaaaat 285  Q
    |||||||||||||||||||| |||||| ||| ||||||| ||| |||||||  ||||| |||   |||||||||||    
T  31517843 gataaaataaagttaaattgatttcatataagctataagctgtcttcataatctgtcttggagagcttatgaaaat 31517768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 260
Target Start/End: Original strand, 49888729 - 49888784
Alignment:
Q  205 aaaaggataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 260  Q
    |||| |||||||||||||| |||||||||| | ||| |||| ||||||||||||||    
T  49888729 aaaaagataaaataaagtttaattgttttcgtataagctattagttgttttcataa 49888784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 260
Target Start/End: Complemental strand, 5592065 - 5592019
Alignment:
Q  214 aaataaagttaaattgttttcatgtaaactataagttgttttcataa 260  Q
    |||||||| |||||||||||||||||||||||||   ||||||||||    
T  5592065 aaataaagctaaattgttttcatgtaaactataatacgttttcataa 5592019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 28467410 - 28467360
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 260  Q
    ||||||||||||| ||||| ||||||| ||| ||| |||||||||||||||    
T  28467410 gataaaataaagtcaaattattttcatataagctacaagttgttttcataa 28467360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 36070217 - 36070267
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 260  Q
    ||||||||||||||||||||| |||   ||| |||||||||||||||||||    
T  36070217 gataaaataaagttaaattgtcttcggataagctataagttgttttcataa 36070267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 9656618 - 9656667
Alignment:
Q  211 ataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 260  Q
    |||||||||||||||||| ||||||| ||| ||||||| ||| |||||||    
T  9656618 ataaaataaagttaaattattttcatataagctataagctgtgttcataa 9656667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 261
Target Start/End: Original strand, 30257644 - 30257701
Alignment:
Q  204 aaaaaggataaaataaagttaaattgttttcatgtaaactataagttgttttcataaa 261  Q
    ||||| ||||||||||||| ||| ||||| ||| ||| || |||||||||||||||||    
T  30257644 aaaaaagataaaataaagtcaaactgtttccatataagctttaagttgttttcataaa 30257701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 256
Target Start/End: Complemental strand, 5756783 - 5756743
Alignment:
Q  216 ataaagttaaattgttttcatgtaaactataagttgttttc 256  Q
    ||||||||||| ||||||||| |||| ||||||||||||||    
T  5756783 ataaagttaaactgttttcatataaattataagttgttttc 5756743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 290
Target Start/End: Complemental strand, 24915154 - 24915074
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataaattgtctcggatcacttatgaaaattagtt 290  Q
    ||||||||||||||||||||||||  | ||  ||||||| |||||||||||  ||||| |||  |||| ||||||| ||||    
T  24915154 gataaaataaagttaaattgtttttgtatatgctataagctgttttcataagctgtcttggagaacttgtgaaaataagtt 24915074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 96 - 132
Target Start/End: Original strand, 26184641 - 26184677
Alignment:
Q  96 ggacacacaacttaattgagcacttatagcataaacg 132  Q
    ||||| ||||||||||||||| |||||||||||||||    
T  26184641 ggacaaacaacttaattgagcgcttatagcataaacg 26184677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 212 - 260
Target Start/End: Original strand, 34952184 - 34952232
Alignment:
Q  212 taaaataaagttaaattgttttcatgtaaactataagttgttttcataa 260  Q
    |||||||||||||||||||||||   ||| || ||||||||||||||||    
T  34952184 taaaataaagttaaattgttttcgaataagctgtaagttgttttcataa 34952232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 214 - 261
Target Start/End: Original strand, 25296955 - 25297002
Alignment:
Q  214 aaataaagttaaattgttttcatgtaaactataagttgttttcataaa 261  Q
    |||| |||||||||||||||||| ||||||||||| ||||||||||||    
T  25296955 aaattaagttaaattgttttcatataaactataagctgttttcataaa 25297002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 1417231 - 1417281
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 260  Q
    ||||||||||||| ||||||||||||| ||| | |||||||||||||||||    
T  1417231 gataaaataaagtcaaattgttttcatataagcaataagttgttttcataa 1417281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 9527193 - 9527143
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 260  Q
    |||| |||||||| ||| ||||||||| |||||||||||||||||||||||    
T  9527193 gatataataaagtcaaactgttttcatataaactataagttgttttcataa 9527143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 211 - 260
Target Start/End: Complemental strand, 17989125 - 17989076
Alignment:
Q  211 ataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 260  Q
    |||||||||||| ||| ||||||||| |||||||||| ||||||||||||    
T  17989125 ataaaataaagtcaaactgttttcatataaactataatttgttttcataa 17989076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 211 - 272
Target Start/End: Original strand, 30496672 - 30496733
Alignment:
Q  211 ataaaataaagttaaattgttttcatgtaaactataagttgttttcataaattgtctcggat 272  Q
    |||||||||||| ||||||||||| | ||| ||||| |||||||||||||| |||| |||||    
T  30496672 ataaaataaagtcaaattgttttcgtataacctataggttgttttcataaactgtcccggat 30496733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 261
Target Start/End: Complemental strand, 22296331 - 22296280
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataaa 261  Q
    ||||||||||||||||||| ||||| | ||| |||||| |||||||||||||    
T  22296331 gataaaataaagttaaattattttcctataacctataaattgttttcataaa 22296280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 285
Target Start/End: Complemental strand, 30456553 - 30456478
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataaattgtctcggatcacttatgaaaat 285  Q
    ||||||||||||| ||||||||||||| |||  ||||||| ||||||||||| | ||| |||   |||||||||||    
T  30456553 gataaaataaagtcaaattgttttcatataagttataagtggttttcataaactatcttggagagcttatgaaaat 30456478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 285
Target Start/End: Complemental strand, 40689089 - 40689014
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataaattgtctcggatcacttatgaaaat 285  Q
    ||||||||||||||||||| ||||||| ||| ||||||| ||| |||||||  | ||  |||| ||||||||||||    
T  40689089 gataaaataaagttaaattattttcatataagctataagctgtgttcataagctatcctggataacttatgaaaat 40689014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 257
Target Start/End: Complemental strand, 45813283 - 45813236
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaactataagttgttttca 257  Q
    ||||||||||||| || |||||||||| ||| ||||||||||||||||    
T  45813283 gataaaataaagtcaacttgttttcatataatctataagttgttttca 45813236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 380
Target Start/End: Original strand, 19624282 - 19624320
Alignment:
Q  343 acaagtgcttatgtcaataga-aaactcaaataagtcaa 380  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  19624282 acaagtgcttatgtcaatagataaactcaaataagtcaa 19624320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 27548230 - 27548280
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 260  Q
    |||||||||||||  |||||||||||| ||| ||||||| |||||||||||    
T  27548230 gataaaataaagtctaattgttttcatttaagctataagctgttttcataa 27548280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 257
Target Start/End: Complemental strand, 28340498 - 28340452
Alignment:
Q  211 ataaaataaagttaaattgttttcatgtaaactataagttgttttca 257  Q
    |||||||||||| ||| |||||||||||||  |||||||||||||||    
T  28340498 ataaaataaagtcaaactgttttcatgtaagttataagttgttttca 28340452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 256
Target Start/End: Complemental strand, 45777274 - 45777228
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaactataagttgttttc 256  Q
    |||||||| |||| ||| ||||||||| |||||||||||||||||||    
T  45777274 gataaaattaagtcaaactgttttcatataaactataagttgttttc 45777228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 206 - 260
Target Start/End: Complemental strand, 47046215 - 47046161
Alignment:
Q  206 aaaggataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 260  Q
    ||||||||||||||||| ||||||||||||| ||| ||   ||||||||||||||    
T  47046215 aaaggataaaataaagtcaaattgttttcatataagctccgagttgttttcataa 47046161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 255
Target Start/End: Original strand, 30180018 - 30180063
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaactataagttgtttt 255  Q
    ||||||||||||||||||||||||| | ||| ||||||| ||||||    
T  30180018 gataaaataaagttaaattgttttcgtataagctataagctgtttt 30180063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 211 - 255
Target Start/End: Original strand, 13960884 - 13960928
Alignment:
Q  211 ataaaataaagttaaattgttttcatgtaaactataagttgtttt 255  Q
    |||||||||||||||||||||||  | ||| ||||||||||||||    
T  13960884 ataaaataaagttaaattgtttttgtataacctataagttgtttt 13960928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 213 - 257
Target Start/End: Original strand, 47177606 - 47177650
Alignment:
Q  213 aaaataaagttaaattgttttcatgtaaactataagttgttttca 257  Q
    |||| ||||||||||||||||||| ||| ||||||| ||||||||    
T  47177606 aaaacaaagttaaattgttttcatataagctataagctgttttca 47177650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 210 - 285
Target Start/End: Complemental strand, 9202851 - 9202776
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataaattgtctcggatcacttatgaaaat 285  Q
    ||||||||||||||||||||||||||| ||| | ||||| ||||||||||| || ||| | |  ||||||||||||    
T  9202851 gataaaataaagttaaattgttttcatataagcaataagctgttttcataagttatcttgaagaacttatgaaaat 9202776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 211 - 261
Target Start/End: Original strand, 4855666 - 4855716
Alignment:
Q  211 ataaaataaagttaaattgttttcatgtaaactataagttgttttcataaa 261  Q
    ||||||||||||||||||||| |||| |||  |||||||||||||||||||    
T  4855666 ataaaataaagttaaattgttatcatataagttataagttgttttcataaa 4855716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 12595843 - 12595793
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 260  Q
    ||||||||||||||||||||||||||| |||||||| || || ||||||||    
T  12595843 gataaaataaagttaaattgttttcatataaactatgagctggtttcataa 12595793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 210 - 290
Target Start/End: Original strand, 12425538 - 12425618
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataaattgtctcggatcacttatgaaaattagtt 290  Q
    ||||||||||||||||||||||||| | ||| ||||||| |||||||| ||  | ||| |||  |||||||||||| ||||    
T  12425538 gataaaataaagttaaattgttttcgtataagctataagctgttttcacaagctatcttggagaacttatgaaaataagtt 12425618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 92 - 186
Target Start/End: Original strand, 26516180 - 26516275
Alignment:
Q  92 gtttggacacacaacttaattgagcacttatagcataaacgtctatcatttaagtgtttaagtataaacactttct-atacaaaagataaaataaa 186  Q
    ||||||| | ||||||||||| ||| |||||||||||| ||  |||||| |||||| ||| |||||| |  ||||| | |||||||||||||||||    
T  26516180 gtttggataaacaacttaattaagcgcttatagcataagcgcttatcatataagtgcttatgtataagctatttctaaaacaaaagataaaataaa 26516275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 260
Target Start/End: Complemental strand, 41957551 - 41957504
Alignment:
Q  213 aaaataaagttaaattgttttcatgtaaactataagttgttttcataa 260  Q
    ||||| ||||||||||||||||||||||  |||||| |||||||||||    
T  41957551 aaaatgaagttaaattgttttcatgtaagttataagctgttttcataa 41957504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 261
Target Start/End: Original strand, 42646878 - 42646933
Alignment:
Q  206 aaaggataaaataaagttaaattgttttcatgtaaactataagttgttttcataaa 261  Q
    |||||||||||| |||||||||||||||  | ||| ||||||| ||||||||||||    
T  42646878 aaaggataaaattaagttaaattgtttttgtttaagctataaggtgttttcataaa 42646933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 10272534 - 10272484
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 260  Q
    |||||||| |||| ||||||||||| | ||| |||||||||||||||||||    
T  10272534 gataaaattaagtcaaattgttttcgtataagctataagttgttttcataa 10272484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 248
Target Start/End: Original strand, 10363717 - 10363755
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaactataag 248  Q
    ||||||||||||||||||||||||||||| ||| |||||    
T  10363717 gataaaataaagttaaattgttttcatgttaacaataag 10363755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 32059692 - 32059642
Alignment:
Q  210 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 260  Q
    ||||||||||||| ||| ||||||||| ||| ||||||| |||||||||||    
T  32059692 gataaaataaagtcaaactgttttcatataagctataagctgttttcataa 32059642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 206 - 260
Target Start/End: Original strand, 34205202 - 34205256
Alignment:
Q  206 aaaggataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 260  Q
    |||||||||| |||||| ||||| |||| || ||| |||||||||||||||||||    
T  34205202 aaaggataaagtaaagtcaaattatttttatataagctataagttgttttcataa 34205256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 41534410 - 41534458
Alignment:
Q  211 ataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 260  Q
    ||||||||||| |||||||||| |||| || |||||||||||||||||||    
T  41534410 ataaaataaagctaaattgttt-catggaagctataagttgttttcataa 41534458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 211 - 255
Target Start/End: Complemental strand, 15905607 - 15905563
Alignment:
Q  211 ataaaataaagttaaattgttttcatgtaaactataagttgtttt 255  Q
    |||| ||||| | |||||||||| |||||||||||||||||||||    
T  15905607 ataatataaaatcaaattgtttttatgtaaactataagttgtttt 15905563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 84 - 187
Target Start/End: Complemental strand, 35135858 - 35135754
Alignment:
Q  84 tagaccctgtttggacacacaacttaattgagcacttatagcataaacgtctatcatttaagtgtttaagtataaacactttctat-acaaaagataaaa 182  Q
    ||||||||||| ||| | ||||||||||| | |||| |||||||||  |  || ||| |||||||||| ||||||    ||||||| |||||||||||||    
T  35135858 tagaccctgttgggataaacaacttaattcaacactcatagcataagtgcttaacatataagtgtttatgtataagatatttctataacaaaagataaaa 35135759  T
Q  183 taaag 187  Q
    |||||    
T  35135758 taaag 35135754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 119 - 183
Target Start/End: Original strand, 5928 - 5993
Alignment:
Q  119 ttatagcataaacgtctatcatttaagtgtttaagtataaacactttctat-acaaaagataaaat 183  Q
    ||||||||||||| | |||||| |||||||||| ||||||||| |||| || ||||||||||||||    
T  5928 ttatagcataaacatttatcatataagtgtttatgtataaacaatttcaataacaaaagataaaat 5993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 211 - 247
Target Start/End: Original strand, 51536 - 51572
Alignment:
Q  211 ataaaataaagttaaattgttttcatgtaaactataa 247  Q
    |||||||||||||||||||||||||| | ||||||||    
T  51536 ataaaataaagttaaattgttttcatatcaactataa 51572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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