View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5569-Insertion-9 (Length: 410)

Name: NF5569-Insertion-9
Description: NF5569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5569-Insertion-9
NF5569-Insertion-9
[»] chr2 (1 HSPs)
chr2 (8-410)||(39300591-39300992)


Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 8 - 410
Target Start/End: Original strand, 39300591 - 39300992
Alignment:
Q  8 aaacagtgattaatgacacgtgtgaatgttgtgaaattggatattgtgactcagcttataataatgaaaattaaaatatagatggattaggatgattgga 107  Q
    |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39300591 aaacagtgattaataacacgtgtgaatggtgtgaaattggatattgtgactcagcttataataatgaaaattaaaatatagatggattaggatgattgga 39300690  T
Q  108 tgagacgaggctggtttttcgtgtttaaagacacgtggaagattgaaggagtgcctcgtatgagtttgtgcttggtagaaagaggtacactgcagatcaa 207  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  39300691 tgaaacgaggctggtttttcgtgtttaaagacacgtggaagattgaaggattgcctcgtatgagtttgtgcttggtagaaagaggtacactgcagatcaa 39300790  T
Q  208 tggaagacacctggtctcaataaatgatttaacagtttattggtgattcaagaatattcaattcgatcttccttttgttgtgggttatttttgaacaatt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  39300791 tggaagacacctggtctcaataaatgatttaacagtttattggtgattcaagaatattcaattcgatcttcgttttgttgtggcttatttttgaacaatt 39300890  T
Q  308 atatttagactgtcattcattcaaatctcaagtttgaatctttagagtgtcaatgannnnnnnnnattttgtgtggactaatccatacataattttgttt 407  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||||||||  |||         |||||||||||||||||||||||||||||||||||    
T  39300891 atatttagagtgtgattcattcaaatctcaagtttgaatctttagagtgtccctga-ttttttttattttgtgtggactaatccatacataattttgttt 39300989  T
Q  408 tgc 410  Q
    |||    
T  39300990 tgc 39300992  T

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