View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5569_high_13 (Length: 400)
Name: NF5569_high_13
Description: NF5569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5569_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 5 - 382
Target Start/End: Complemental strand, 48018216 - 48017827
Alignment:
| Q |
5 |
catactcatctggaaggtttatttctcatacatacaattttactatatacattctcattgtaaaaataatatatat------------gtagtatacatt |
92 |
Q |
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| T |
48018216 |
catactcatctggaaggtttatttctcatacatacaattttactatatacattttcattgtaaaaataatatatatatatatatatatgtagtatacatt |
48018117 |
T |
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| Q |
93 |
gcctaataattgtcaatttaggatccacaacttgggaactggtggatgagatttggtgacggcacattgatagggtattggccagtagagttattcacac |
192 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48018116 |
gcctaataattgtcaatttaggatccacaacttgggaactggtggatgagatttggtgacggcacattgatagggtattggccagtagagttattcacac |
48018017 |
T |
|
| Q |
193 |
acttagccgaccgtgccaccatggtccaatggggtggcgaggtagtgaacagtcgcgccaatggccaacacacctccactcaaatgggttccggccactt |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48018016 |
acttagccgaccgtgccaccatggtccaatggggtggcgaggtagtgaacagtcgcgccaatggccaacacacctccactcaaatgggttccggccactt |
48017917 |
T |
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| Q |
293 |
tgctgaagatggctttggaaaagcaagctacttcaggaaccttgagatcgtagacaccgacaacagtctcacctccgcgaccaacatctt |
382 |
Q |
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| T |
48017916 |
tgctgaagatggctttggaaaagcaagctacttcaggaaccttgagatcgtagacaccgacaacagtctcacctccgcgaccaacatctt |
48017827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 126 - 340
Target Start/End: Original strand, 35409615 - 35409829
Alignment:
| Q |
126 |
gggaactggtggatgagatttggtgacggcacattgatagggtattggccagtagagttattcacacacttagccgaccgtgccaccatggtccaatggg |
225 |
Q |
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||||| ||||||||||| ||||| ||| ||||||| ||||||||||||||| |||| |||| |||||||||||||| | ||||||||||| |||||| |
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| T |
35409615 |
gggaattggtggatgagttttggcgacaacacattggtagggtattggccagcagagctatttacacacttagccgatcacgccaccatggtagaatggg |
35409714 |
T |
|
| Q |
226 |
gtggcgaggtagtgaacagtcgcgccaatggccaacacacctccactcaaatgggttccggccactttgctgaagatggctttggaaaagcaagctactt |
325 |
Q |
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|||||||||| |||||| || || | |||| ||||||||||||||| |||||||||||||||||||| || ||||| || ||||||||||||||||| |
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| T |
35409715 |
gtggcgaggtggtgaactcacggaccgacggccgacacacctccactcagatgggttccggccactttgccgaggatggtttcggaaaagcaagctactt |
35409814 |
T |
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| Q |
326 |
caggaaccttgagat |
340 |
Q |
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||||||||||||| |
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| T |
35409815 |
tcggaaccttgagat |
35409829 |
T |
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