View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5569_high_23 (Length: 273)
Name: NF5569_high_23
Description: NF5569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5569_high_23 |
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Alignment Details
Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 11 - 221
Target Start/End: Complemental strand, 680425 - 680205
Alignment:
| Q |
11 |
aacataggaggttagatttaaatgaaagatttgagtttgatagatcatcaattattttgatttcattgtgatttatatatctaaaaatgaatnnnnnnnn |
110 |
Q |
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| T |
680425 |
aacatagaaggttagatttaaatgaaagatttgagtttgatagatcatcaattattttgatttcattgtgatttatatatctaaaaatgaataaataaaa |
680326 |
T |
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| Q |
111 |
ngaaagaaa----------gaagtatttaataaatatttaaaaattgatataagaatcatgagcgtgtagaccacaccaccgttaggaaataaaccccac |
200 |
Q |
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| T |
680325 |
aaaaaaaaaaaaagaagaagaagtatttaataaatatttaaaaattgatataagaatcatgagcgtgtagaccacaccaccgttaggaaataaaccccac |
680226 |
T |
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| Q |
201 |
catattctcaaacctttaaac |
221 |
Q |
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||||||||||||||||||||| |
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| T |
680225 |
catattctcaaacctttaaac |
680205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 118 - 202
Target Start/End: Complemental strand, 748234 - 748150
Alignment:
| Q |
118 |
aagaagtatttaataaatatttaaaaattgatataagaatcatgagcgtgtagaccacaccaccgttaggaaataaaccccacca |
202 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
748234 |
aagaattatttaataaatatttaaaaattgatataagaatcatgagcgtgtagaccacaccaccgttagcaaataaaccccacca |
748150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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