View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5569_high_25 (Length: 254)
Name: NF5569_high_25
Description: NF5569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5569_high_25 |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 45103258 - 45103497
Alignment:
| Q |
1 |
cacctgacccacattgtatacgggccacatattgggccgacctaatgtttggcaatacggtccacaattacaataattgnnnnnnnnnnnnnn-gttgac |
99 |
Q |
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| T |
45103258 |
cacctgacccacattgtatacgggccacatattggggcgacctaatgtttggcaatacggtccacaattacaataattgtttttttttttttttgttgac |
45103357 |
T |
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| Q |
100 |
aaattattacaataattgttgtaaaattaaataaaaatgtccattatagtacattgcatttatatatatcagttgaaagtaattaatattggatcgtatt |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
45103358 |
aaattattacaataattgttgtaaaattaaataaaaatgtccattatagtacattgcatttatatatatcagtcgaaagtaattaatattggatcgtatt |
45103457 |
T |
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| Q |
200 |
tcacgattctttgtctgttctttcttctcccttatccccc |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
45103458 |
tcacgattctttgtctgttctttcttctcccttatccccc |
45103497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 98 - 196
Target Start/End: Original strand, 45130034 - 45130132
Alignment:
| Q |
98 |
acaaattattacaataattgttgtaaaattaaataaaaatgtccattatagtacattgcatttatatatatcagttgaaagtaattaatattggatcgt |
196 |
Q |
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|||| |||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||| || |||||| |
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| T |
45130034 |
acaagttatcacaataattgttgtaaaataaaataaaaatgtccattatgatacattgcatttatatatagcagtcgaaagtaattaatgttcgatcgt |
45130132 |
T |
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