View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5569_high_3 (Length: 490)
Name: NF5569_high_3
Description: NF5569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5569_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 18 - 479
Target Start/End: Original strand, 52392711 - 52393164
Alignment:
| Q |
18 |
aggacatggaattagtgcttgatctgaatgatctatctaaatctaattccaccctttacataaatgtaacatatccatgaatgtaatttcnnnnnnnnnn |
117 |
Q |
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| T |
52392711 |
aggacatggaattagtgcttgatctgaatgatctatctaaatctaattccaccctttacataaatgtaacatatccatgaatgtaatttcttttttgttt |
52392810 |
T |
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| Q |
118 |
nnnnnnaaggtgacacgaatgtaattgttggtttggttggtatatgggcgctaattttattttgccacttataattctgcattgaataatgttaatttat |
217 |
Q |
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| T |
52392811 |
tgttttcaggtgacccgaatgtaattgttggtt-----ggtatatgggcgctaattttattttgccacttataattctgcattgaataatgttaatttat |
52392905 |
T |
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| Q |
218 |
ccataaggttttggtatttatttttctatatttactcaacacatataagggaaatgtctgtaccaannnnnnnnnnnnnnnnnggggaacggattctaag |
317 |
Q |
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| T |
52392906 |
ccataaggttttggtatttatttttctatatttactcaacacatataagggaaatgtctgtaccaaaaaaataataataa---ggagaacggattctaag |
52393002 |
T |
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| Q |
318 |
atgtattgtaaatataggaaattcagtattaaatttaattaacataacaaaaattgttttttccttttcctaaacaaaggatcgtgttttctggattttt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52393003 |
atgtattgtaaatataggaaattcagtattaaatttaattaacataacaaaaattgttttttccttttcctaaacaaaggatcgtgttttctggattttt |
52393102 |
T |
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| Q |
418 |
ctagtcatgtgctacggtttgggcttttgtcttctgctttgttgtgagttgtttttgttcat |
479 |
Q |
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| T |
52393103 |
ctagtcatgtgctacggtttgggcttttgtctgctgctttgttgtgagttgtttttgttcat |
52393164 |
T |
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