View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5569_high_30 (Length: 238)
Name: NF5569_high_30
Description: NF5569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5569_high_30 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 42494602 - 42494378
Alignment:
| Q |
1 |
agacggtttagcccaaggtatgcgtaaccacaaacttggtttcgtcgaagacgctaatattgaacctttcctcttcgatgaacagcataacaccttttta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42494602 |
agacggtttagcccaaggtatgcgtaaccacaaacttggtttcgtcgaagacgctaatattgaacctttcctcttcgatgaacagcataacaccttttta |
42494503 |
T |
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| Q |
101 |
aaattcggttacgctgctgatccttctgcgtcgaattacatcggtgatttcgatgctttgcagaagaataatgctgcttctgtttacaatatcccacacc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
42494502 |
aaattcggttacgctgctgatccttctgcgtcgaattacatcggtgatttcgatgctttgcagaagaataacgctgcttctgtttacaatatcccacacc |
42494403 |
T |
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| Q |
201 |
gcgaacagaagaagaggaaaattga |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
42494402 |
gcgaacagaagaagaggaaaattga |
42494378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 32290117 - 32290341
Alignment:
| Q |
1 |
agacggtttagcccaaggtatgcgtaaccacaaacttggtttcgtcgaagacgctaatattgaacctttcctcttcgatgaacagcataacaccttttta |
100 |
Q |
| |
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|||||||||||| |||||||||||||||||||| || ||||| || |||||||||||||| |||||||||||||| |||||||||||||| ||||||||| |
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| T |
32290117 |
agacggtttagcacaaggtatgcgtaaccacaagctcggttttgttgaagacgctaatatcgaacctttcctctttgatgaacagcataataccttttta |
32290216 |
T |
|
| Q |
101 |
aaattcggttacgctgctgatccttctgcgtcgaattacatcggtgatttcgatgctttgcagaagaataatgctgcttctgtttacaatatcccacacc |
200 |
Q |
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||||||||||| ||||||||||| ||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
32290217 |
aaattcggttatgctgctgatccgtctgcttcgaattatgtcggtgattttgatgctttgcagaagaataatgctgcttctgtttataatatcccacacc |
32290316 |
T |
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| Q |
201 |
gcgaacagaagaagaggaaaattga |
225 |
Q |
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| |||||||||||| |||||||||| |
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| T |
32290317 |
gtgaacagaagaagcggaaaattga |
32290341 |
T |
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