View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5569_high_4 (Length: 487)
Name: NF5569_high_4
Description: NF5569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5569_high_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 18 - 343
Target Start/End: Complemental strand, 51295191 - 51294866
Alignment:
| Q |
18 |
actataatctaataatcggataaatacgagaacaatgagggttactgttgtccctaaagctgaaatattgacacaaaggaaagggaatccagtgcttttt |
117 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51295191 |
actatagtctaataatcggataaatacgagaacaatgagggttactgttgtcccaaaagctgaaatattgacacaaaggaaagggaatccagtgcttttt |
51295092 |
T |
|
| Q |
118 |
ctgtaggtataccaaagttacagattcgcactagaaaagtagaacgttataaggtagacaccaaatgatctagctatatgactgcaaagttaatttcatt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51295091 |
ctgtaggtataccaaagttacagattcgcactagaaaagtagaacgttataaggtagacaccaaatgatctagctatatgactgcaaagttaatttcatt |
51294992 |
T |
|
| Q |
218 |
catgtgatgtgcttactagaaattgctagatatgccgtaaataacctaaaccctaaatatttccttaacatnnnnnnngctaaccaaaataaaacaagac |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
51294991 |
catgtgatgtgcttactagaaattgctagatatgtcttaaataacctaaaccctaaatatttccttaacataaaaaaagctaaccaaaataaaacaagac |
51294892 |
T |
|
| Q |
318 |
ggagttgttacataataaaatattgg |
343 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
51294891 |
ggagttgttacataataaaatattgg |
51294866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 422 - 478
Target Start/End: Complemental strand, 51294784 - 51294730
Alignment:
| Q |
422 |
ttattttgatattcaatgtcattgtaatcatattagtataccctatccatctctttg |
478 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
51294784 |
ttattttgatattcaatgtcattgtaatcatattag--taccctatccatctctttg |
51294730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 277
Target Start/End: Complemental strand, 2597963 - 2597910
Alignment:
| Q |
224 |
atgtgcttactagaaattgctagatatgccgtaaataacctaaaccctaaatat |
277 |
Q |
| |
|
|||||||||||||||||| || ||| | || |||||||||||||| |||||||| |
|
|
| T |
2597963 |
atgtgcttactagaaattacttgatgtaccttaaataacctaaactctaaatat |
2597910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University