View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5569_high_8 (Length: 445)
Name: NF5569_high_8
Description: NF5569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5569_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 384; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 20 - 432
Target Start/End: Original strand, 11551268 - 11551680
Alignment:
| Q |
20 |
caacttttagttgtatttgatcatctctaattcctagaatctcattcaaataaccaaccataatttgtctcttctatatgtttgtttcgtttcaatttga |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11551268 |
caacttttagttgtatttgatcatctctaattcctagaatctcattcaaataaccaaccataatttgtctcttctatatgtttgtttcgtttcaatttga |
11551367 |
T |
|
| Q |
120 |
aattctactattttctgttggctgaaacagtttcaggtcaccctttttctttcatacaaaataatgcagttaccatttttctttgattcattcctatcta |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11551368 |
aattctactattttctgttggctgaaacagtttcaggtcaccctttttctttcatacaaaataatgcagttaccatttttctttgattcattcctatcta |
11551467 |
T |
|
| Q |
220 |
tcatatagagaggatgnnnnnnngagtaaaacttgtgcagaacctgtcaattgtaaaggcttttcttcccgcaccagcctctcttctttgtctcataact |
319 |
Q |
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| T |
11551468 |
tcatatagagaggatgaaaaaaagagtaaaacttgtgcagaacctgtcaattgtcaaggcttttcttcccgcaccagcctctcttctttgtctcataact |
11551567 |
T |
|
| Q |
320 |
ttcaatttgaatgttcaaagtatgtagctcttcacagttccccaacaattgcctgagccacaagataaattttgtgtgaatgtcgatttgctttgtggtt |
419 |
Q |
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| T |
11551568 |
ttcaatttgaatgttcaaagtatgtagctcttcacagttccccaacaattgcctgagccacaagataaattttgtgtgaatgtcgatttcctttgtggtt |
11551667 |
T |
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| Q |
420 |
tccgttctctgct |
432 |
Q |
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| T |
11551668 |
tccgttctctgct |
11551680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 96 - 432
Target Start/End: Original strand, 11546489 - 11546820
Alignment:
| Q |
96 |
tatgtttgtttcgtttcaatttgaaattctactattttctgttggctgaaacagtttcaggtcaccctttttctttcatacaaaataatgcagttaccat |
195 |
Q |
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|||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
11546489 |
tatgtttgtttcattttaatttgaaattatactattttctgttggctgaaacagtttcaggtcaccctttttctttcttacaaaataatgcagttaccat |
11546588 |
T |
|
| Q |
196 |
ttttctttgattcattc-----ctatctatcatatagagaggatgnnnnnnngagtaaaacttgtgcagaacctgtcaattgtaaaggcttttcttcccg |
290 |
Q |
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||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||| | || |||||||||| |
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| T |
11546589 |
ttttctttgattcattcatatgatatctatcatatagagtggatgaaaaaaagagtaaaacttgtgcagaacctgtc-------atggtttttcttccca |
11546681 |
T |
|
| Q |
291 |
caccagcctctcttctttgtctcataactttcaatttgaatgttcaaagtatgtagctcttcacagttccccaacaattgcctgagccacaagataaatt |
390 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| | || |
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| T |
11546682 |
caccagcctctcttctttgtctcataaatttcaatttgaatgtccaaagtatgtagctcttcacagttccccaacaa---cctgagccacaagagatgtt |
11546778 |
T |
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| Q |
391 |
ttgtgtgaatgtcgatttgctttgtggtttccgttctctgct |
432 |
Q |
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||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
11546779 |
ttgtgtgaatgtcaatttgttttgtggtttccgttctctgct |
11546820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 24 - 235
Target Start/End: Complemental strand, 11562208 - 11561998
Alignment:
| Q |
24 |
ttttagttgtatttgatcatctctaattcctagaatctcattcaaataaccaaccataatttgtctcttctatatgtttgtttcgtttcaatttgaaatt |
123 |
Q |
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|||||| | ||||||||||||||||||| || || ||||||||||||||||| ||||| |||||||||||||||| |||||||| ||||||||||||||| |
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| T |
11562208 |
ttttagctatatttgatcatctctaattacttgactctcattcaaataacca-ccatagtttgtctcttctatatatttgtttcatttcaatttgaaatt |
11562110 |
T |
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| Q |
124 |
ctactattttctgttggctgaaacagtttcaggtcaccctttttctttcatacaaaataatgcagttaccatttttctttgattcattcctatctatcat |
223 |
Q |
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| T |
11562109 |
ctactattttctcttggctgaaacagtttcaggtcaccctttttctttcatacaaaataatgaagttaccatttttctttgattcattcatatcaatcat |
11562010 |
T |
|
| Q |
224 |
atagagaggatg |
235 |
Q |
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|||||| ||||| |
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| T |
11562009 |
atagagtggatg |
11561998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 299 - 432
Target Start/End: Complemental strand, 11561957 - 11561830
Alignment:
| Q |
299 |
tctcttctttgtctcataactttca-atttgaatgttcaaagtatgtagctcttcacagttccccaacaattgcctgagccacaagataaattttgtgtg |
397 |
Q |
| |
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|||||||||||||||||| ||||| ||||||| ||||||| ||||||||||||||||||||| || |||||| | ||||| |||||||||||| |
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| T |
11561957 |
tctcttctttgtctcatagatttcatatttgaaagttcaaattatgtagctcttcacagttccacatcaattgtc-------caagagaaattttgtgtg |
11561865 |
T |
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| Q |
398 |
aatgtcgatttgctttgtggtttccgttctctgct |
432 |
Q |
| |
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|||||| ||||| |||||||||| | ||||||||| |
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| T |
11561864 |
aatgtcaatttgttttgtggttttcattctctgct |
11561830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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