View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5569_low_10 (Length: 427)
Name: NF5569_low_10
Description: NF5569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5569_low_10 |
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| [»] scaffold0147 (1 HSPs) |
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Alignment Details
Target: scaffold0147 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 12 - 412
Target Start/End: Complemental strand, 10657 - 10254
Alignment:
| Q |
12 |
atgaaactttgacagaataagcgacaaaa-caccttcaattctatcatggataaatgctgtcctggacagacacgagaaccgattccaaatggcatataa |
110 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10657 |
atgaaactttgacagaataagcgacaaaaacaccttcaattctatcatggataaatgctgtcctggacagacacgagaaccgattccaaatggcatataa |
10558 |
T |
|
| Q |
111 |
gcttgtggcatcttgcaggctctaagcacaccatttgcaaatctttcaggattgaactcgtgtgcatcggccccccaaatatcaatttcatgctgcaata |
210 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
10557 |
gcttgtggaatcttgcaggctctaagcacaccatttgcaaatctttcaggattgaactcgtgtgcatcggccccccaaatatcaatgtcatgctgcaata |
10458 |
T |
|
| Q |
211 |
ttgggattggaatctgaatattcattccttttggaactttgataccttttatgttaatatcttggaaagctgctctggtgagaaatactgctggcggata |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
10457 |
ttgggattggaatctgaatattcattccttttggaactttgataccttttatgttaatatcttggaaagctgttctggtgagaaatactgctggcggata |
10358 |
T |
|
| Q |
311 |
aagcctcaaagtctcttgaatcaccatggttaactgcaaacgcaacaattttatagaagatttact--atgcataagaatatctaaaatgacatgatgaa |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
10357 |
aagcctcaaagtctcttgaatcaccatggttaactgcaaacgcaacaattttatagaagatttacttaatgcataagaatatctaaaatgacatgatgaa |
10258 |
T |
|
| Q |
409 |
tatg |
412 |
Q |
| |
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|||| |
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| T |
10257 |
tatg |
10254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 238; Significance: 1e-131; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 14 - 350
Target Start/End: Complemental strand, 19208395 - 19208058
Alignment:
| Q |
14 |
gaaactttgacagaataagcgacaaaa-caccttcaattctatcatggataaatgctgtcctggacagacacgagaaccgattccaaatggcatataagc |
112 |
Q |
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||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
19208395 |
gaaactttgacaggatgagcgacaaaaacaccttcaattctatcatggataaatgctgtccaggacagacacgggaaccgattccaaatggcatataagc |
19208296 |
T |
|
| Q |
113 |
ttgtggcatcttgcaggctctaagcacaccatttgcaaatctttcaggattgaactcgtgtgcatcggccccccaaatatcaatttcatgctgcaatatt |
212 |
Q |
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|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| || || |||||||| |
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| T |
19208295 |
ttgtggaatcttgcaggctccaagcacaccatttgcaaatctttcaggattgaactcgtgtgcatcgggcccccagatatcaatgtcttgttgcaatatc |
19208196 |
T |
|
| Q |
213 |
gggattggaatctgaatattcattccttttggaactttgataccttttatgttaatatcttggaaagctgctctggtgagaaatactgctggcggataaa |
312 |
Q |
| |
|
| ||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||| | || |||||||| |||||||||||| ||||||| |
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| T |
19208195 |
gcaattggaatctgcatattaattccttttggaactttgataccttttaaattaatatcttggaatgatgttctggtgataaatactgctggtggataaa |
19208096 |
T |
|
| Q |
313 |
gcctcaaagtctcttgaatcaccatggttaactgcaaa |
350 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
19208095 |
gcctcaaagtctcttgaatcaccatggttaactgcaaa |
19208058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 130; Significance: 3e-67; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 14 - 350
Target Start/End: Complemental strand, 25197862 - 25197525
Alignment:
| Q |
14 |
gaaactttgacagaataagcgacaaaa-caccttcaattctatcatggataaatgctgtcctggacagacacgagaaccgattccaaatggcatataagc |
112 |
Q |
| |
|
|||||||||||||||| || ||||| | ||||||||||||||||||| |||||| || || ||||||||||| |||||||||||||||||||||||||| |
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| T |
25197862 |
gaaactttgacagaatgagagacaatatcaccttcaattctatcatgcctaaatgttgcccgggacagacacgtgaaccgattccaaatggcatataagc |
25197763 |
T |
|
| Q |
113 |
ttgtggcatcttgcaggctctaagcacaccatttgcaaatctttcaggattgaactcgtgtgcatcggccccccaaatatcaatttcatgctgcaatatt |
212 |
Q |
| |
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|||||| | |||||||| || |||||||||||||| |||||||||||| ||||| |||||||||||| ||||||| ||||| | || | ||| ||||| |
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|
| T |
25197762 |
ttgtggaaacttgcaggatccaagcacaccatttgaaaatctttcaggtttgaattcgtgtgcatcgaccccccatatatccttgtcttcctgaaatatc |
25197663 |
T |
|
| Q |
213 |
gggattggaatctgaatattcattccttttggaactttgataccttttatgttaatatcttggaaagctgctctggtgagaaatactgctggcggataaa |
312 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||| |||||||||||||| | | ||||| || | || ||| | | ||| | | | || | ||||| |
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| T |
25197662 |
gggattggaatctgaatagtgattccttttggaattttgataccttttaaatcataatcttttaatgttgttcttgcggcaaacaatacaggtgaataaa |
25197563 |
T |
|
| Q |
313 |
gcctcaaagtctcttgaatcaccatggttaactgcaaa |
350 |
Q |
| |
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|||| |||||||||||||||||||| |||||||||||| |
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| T |
25197562 |
gccttaaagtctcttgaatcaccattgttaactgcaaa |
25197525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 41 - 348
Target Start/End: Complemental strand, 1763370 - 1763063
Alignment:
| Q |
41 |
caccttcaattctatcatggataaatgctgtcctggacagacacgagaaccgattccaaatggcatataagcttgtggcatcttgcaggctctaagcaca |
140 |
Q |
| |
|
|||||||||||| | ||| | || |||||||||| ||| ||||||| || |||||||||||||| ||| ||||||| |||||||| |||| | |||| |
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| T |
1763370 |
caccttcaattcaaccatagctagatgctgtcctaaacatacacgaggtcccattccaaatggcatgtaaacttgtggaatcttgcatgctccatgcact |
1763271 |
T |
|
| Q |
141 |
ccatttgcaaatctttcaggattgaactcgtgtgcatcggccccccaaatatcaatttcatgctgcaatattgggattggaatctgaatattcattcctt |
240 |
Q |
| |
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||||||||||||||||| |||||||||| |||||||| ||||||| || || || ||||||||||| |||||||| |||| ||||||||||| |
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| T |
1763270 |
ccatttgcaaatctttccggattgaacttatgtgcatcatgtccccaaagctctgggtcttgatgcaatattggcattggaatttgaagattcattcctt |
1763171 |
T |
|
| Q |
241 |
ttggaactttgataccttttatgttaatatcttggaaagctgctctggtgagaaatactgctggcggataaagcctcaaagtctcttgaatcaccatggt |
340 |
Q |
| |
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|||||| || ||||||||| | ||||| |||| ||||| ||| | ||| |||||| |||||||||||||| ||||||||||||||||| || |
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| T |
1763170 |
ttggaatttggatacctttgaaattaatgtcttcaaaagcctgtctaacaaccgataatgctggtggataaagcctcaatgtctcttgaatcaccattgt |
1763071 |
T |
|
| Q |
341 |
taactgca |
348 |
Q |
| |
|
|||||||| |
|
|
| T |
1763070 |
taactgca |
1763063 |
T |
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