View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5569_low_11 (Length: 419)
Name: NF5569_low_11
Description: NF5569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5569_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 12 - 404
Target Start/End: Complemental strand, 45068730 - 45068338
Alignment:
| Q |
12 |
tcatcactcatcaaaacagaacttgtcattgagtattgaccaaatacaatttcttttaacattaattgttgatattcnnnnnnnataggcaaatgttagt |
111 |
Q |
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| T |
45068730 |
tcatcactcatcaaaacagaacttgtcattgagtattgaccaaatacaatttcttttaacattaattgttgatattctttttttataggcaaatgttagt |
45068631 |
T |
|
| Q |
112 |
gattaattagttaagaggagggagaaatgtttgtcgcagggatcgaactctgaacttgctacatagaactccttcggtttcctaacccttatcattgggc |
211 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45068630 |
gattaattagttaaggggagggagaaatgtttgtcgcagggatcgaactctgaacttgctacatagaactccttcggtttcctaacccttatcattgggc |
45068531 |
T |
|
| Q |
212 |
tacaccgtcgaagacattgtcgatatttgtttgacgtatactaacctcaacctcaacctctaagcaaagagattgagacttgatccaataactttcatgc |
311 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
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| T |
45068530 |
tacaccgtcaaagacattgtcgatatttgtttgacgtatactaacctcaacctcaacctcaaagcgaagagattgagacttgatccaataactttcatgc |
45068431 |
T |
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| Q |
312 |
ctatgctatataccctacaatgttatccatttgataggcatggtgatagtacttgcagacaaatacattgaccctatatcatatcctattatt |
404 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45068430 |
ctatgctatataccctacaatgttatccatttgataggcatggtgatagtacttgcagacaaatacattgaccctatatcatatcctattatt |
45068338 |
T |
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