View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5569_low_12 (Length: 412)
Name: NF5569_low_12
Description: NF5569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5569_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Complemental strand, 34387822 - 34387426
Alignment:
| Q |
1 |
caacatttaccggcattaaaatccgcggtggaattgttaccgacgattgaaatcaacgagagtcatatgaatgtagaatcacattgtgccgtttgtaaag |
100 |
Q |
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| T |
34387822 |
caacatttaccggcattaaaatccgcggtggaattgttaccgacgattgaaatcaacgagagtcatatgaatgtagaatcacattgtgccgtttgtaaag |
34387723 |
T |
|
| Q |
101 |
agccttttgaacttggaatttcagctagtgaaatgccatgcaaacacatataccataatgaatgcatacttccatggcttgcaattcaaaattcttgtcc |
200 |
Q |
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| T |
34387722 |
agccttttgaacttggaatttcagctagggaaatgccatgcaaacacatataccataatgaatgcatacttccatggcttgcaattcaaaattcttgtcc |
34387623 |
T |
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| Q |
201 |
cgtttgtcgacatgaattgccttgtgaatcaccacaaattaacaatgaaatttccaattcgaatgaagacgagaatgttgggttgacaatttggaggtta |
300 |
Q |
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| T |
34387622 |
cgtttgtcgacatgaattgccttgtgaatcaccacaaattaacaatgaaatttccaattcgaatgaagacgagaatgttgggttgacaatttggaggtta |
34387523 |
T |
|
| Q |
301 |
ccgggtggagggtttgccgttggaagattttctggtgatggaggtgggggtgagaatagaatggagcatcctattgtttacacagaagtggatggtg |
397 |
Q |
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| T |
34387522 |
ccgggtggagggtttgccgttggaagattttctggtgacggaggtgggggtgagaatagaatggagcatcctattgtttacacagaagtggatggtg |
34387426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 330
Target Start/End: Complemental strand, 41697456 - 41697403
Alignment:
| Q |
277 |
gttgggttgacaatttggaggttaccgggtggagggtttgccgttggaagattt |
330 |
Q |
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| T |
41697456 |
gttggattgacaatatggaggttaccgggaggtggatttgctgttggaagattt |
41697403 |
T |
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