View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5569_low_13 (Length: 410)

Name: NF5569_low_13
Description: NF5569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5569_low_13
NF5569_low_13
[»] chr2 (4 HSPs)
chr2 (14-257)||(28463339-28463582)
chr2 (340-384)||(14724303-14724347)
chr2 (339-381)||(45444090-45444132)
chr2 (258-308)||(14724378-14724428)
[»] chr6 (4 HSPs)
chr6 (258-384)||(5358705-5358831)
chr6 (259-315)||(8251174-8251230)
chr6 (339-384)||(2800067-2800112)
chr6 (338-384)||(8251253-8251299)
[»] chr3 (11 HSPs)
chr3 (258-384)||(29360993-29361119)
chr3 (338-384)||(3090687-3090733)
chr3 (258-307)||(3090608-3090657)
chr3 (340-384)||(48443591-48443635)
chr3 (338-384)||(13878128-13878174)
chr3 (338-384)||(37035892-37035938)
chr3 (258-308)||(48443667-48443717)
chr3 (338-384)||(12139642-12139688)
chr3 (258-306)||(12139563-12139611)
chr3 (342-381)||(41751916-41751955)
chr3 (339-383)||(11579939-11579983)
[»] chr1 (6 HSPs)
chr1 (258-316)||(52111350-52111408)
chr1 (340-384)||(25724231-25724275)
chr1 (338-384)||(46668885-46668931)
chr1 (258-307)||(46668805-46668854)
chr1 (338-383)||(52111430-52111475)
chr1 (339-384)||(52113206-52113251)
[»] chr8 (6 HSPs)
chr8 (338-384)||(5729670-5729716)
chr8 (338-384)||(5729877-5729923)
chr8 (259-308)||(6181417-6181466)
chr8 (257-318)||(20521643-20521704)
chr8 (339-381)||(21431337-21431379)
chr8 (346-383)||(24099724-24099761)
[»] chr5 (7 HSPs)
chr5 (338-384)||(10243153-10243199)
chr5 (338-384)||(17886728-17886774)
chr5 (259-307)||(10243074-10243122)
chr5 (340-384)||(36438015-36438059)
chr5 (342-381)||(31386199-31386238)
chr5 (338-384)||(4150640-4150686)
chr5 (258-308)||(36438089-36438139)
[»] chr4 (7 HSPs)
chr4 (338-384)||(53526778-53526824)
chr4 (340-384)||(9597946-9597990)
chr4 (342-381)||(49649677-49649716)
chr4 (339-384)||(16003970-16004015)
chr4 (258-318)||(9598013-9598073)
chr4 (338-382)||(45292189-45292233)
chr4 (338-381)||(33860937-33860980)
[»] scaffold0504 (1 HSPs)
scaffold0504 (339-381)||(6879-6921)
[»] scaffold0154 (1 HSPs)
scaffold0154 (339-381)||(10994-11036)
[»] chr7 (4 HSPs)
chr7 (338-384)||(33222600-33222646)
chr7 (342-381)||(41021137-41021176)
chr7 (338-384)||(2486656-2486702)
chr7 (263-318)||(2486581-2486636)


Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 14 - 257
Target Start/End: Complemental strand, 28463582 - 28463339
Alignment:
Q  14 caaaggcaaagcatattagtgtgtttctgaccaatgggaatcagcagacaactgtttataagaaattgtatgatgatttaaaagccttattgttgctcag 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||    
T  28463582 caaaggcaaagcatattagtgtgtttctgaccaatgggaatcagcagacaactgctgataagaaattgtatgatgagttaaaagccttattgttgctcag 28463483  T
Q  114 ttccttgcctaataattgagannnnnnnnngttgttgtgaaatttactaatttagctccacatggaagttggtaatgtcagtggttaaagagagcatgca 213  Q
    |||||||||||||||||||||         ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  28463482 ttccttgcctaataattgagatttttttttgttgttgtgaaatttactaatttcgctccaaatggaagttggtaatgtcagtggttaaagagagcatgca 28463383  T
Q  214 atgaagactgcagtggatttgatcaacctttctcattatattcc 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  28463382 atgaagactgcagtggatttgatcaacctttctcattatattcc 28463339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 340 - 384
Target Start/End: Complemental strand, 14724347 - 14724303
Alignment:
Q  340 attaaagtgatattgattgatgtgactattttatttatcttttaa 384  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  14724347 attaaagtgatattgattgatgtgactattttatttatcttttaa 14724303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 339 - 381
Target Start/End: Complemental strand, 45444132 - 45444090
Alignment:
Q  339 gattaaagtgatattgattgatgtgactattttatttatcttt 381  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  45444132 gattaaagtgatattgattgatgtgactaatttatttatcttt 45444090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 258 - 308
Target Start/End: Complemental strand, 14724428 - 14724378
Alignment:
Q  258 gagaaactcttacttggtcacaagaccaacacctcatatttagacacacac 308  Q
    ||||||||||||| | |||||| ||||||||||||| |||||| |||||||    
T  14724428 gagaaactcttacctagtcacaggaccaacacctcacatttaggcacacac 14724378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 7e-22; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 258 - 384
Target Start/End: Original strand, 5358705 - 5358831
Alignment:
Q  258 gagaaactcttacttggtcacaagaccaacacctcatatttagacacacacacaagaagctnnnnnnnnnnnnnnnnnnntgattaaagtgatattgatt 357  Q
    |||||||||||||||||||||||||||||||||||| |||||| |||||| |||| |||||                   ||||||||||||||||||||    
T  5358705 gagaaactcttacttggtcacaagaccaacacctcacatttaggcacacatacaataagctaaaaaaattaaaaagaaaatgattaaagtgatattgatt 5358804  T
Q  358 gatgtgactattttatttatcttttaa 384  Q
    |||||||||||||||||||||||||||    
T  5358805 gatgtgactattttatttatcttttaa 5358831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 259 - 315
Target Start/End: Original strand, 8251174 - 8251230
Alignment:
Q  259 agaaactcttacttggtcacaagaccaacacctcatatttagacacacacacaagaa 315  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  8251174 agaaacttttacttggtcacaagaccaacaccttatatttagacatacacacaagaa 8251230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 339 - 384
Target Start/End: Complemental strand, 2800112 - 2800067
Alignment:
Q  339 gattaaagtgatattgattgatgtgactattttatttatcttttaa 384  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  2800112 gattaaagtgatattgattgatgtgacaattttatttatcttttaa 2800067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 338 - 384
Target Start/End: Original strand, 8251253 - 8251299
Alignment:
Q  338 tgattaaagtgatattgattgatgtgactattttatttatcttttaa 384  Q
    |||||||| | ||||||||||||||||||||||||||||||||||||    
T  8251253 tgattaaaataatattgattgatgtgactattttatttatcttttaa 8251299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 7e-22; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 258 - 384
Target Start/End: Complemental strand, 29361119 - 29360993
Alignment:
Q  258 gagaaactcttacttggtcacaagaccaacacctcatatttagacacacacacaagaagctnnnnnnnnnnnnnnnnnnntgattaaagtgatattgatt 357  Q
    ||||||||||||||||||||||||| || || |||||||||||||||| ||||||||||||                   ||||||||||||||||||||    
T  29361119 gagaaactcttacttggtcacaagatcatcatctcatatttagacacatacacaagaagctaaaaaaattaaaaagaaaatgattaaagtgatattgatt 29361020  T
Q  358 gatgtgactattttatttatcttttaa 384  Q
    |||||||||||||||||||||||||||    
T  29361019 gatgtgactattttatttatcttttaa 29360993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 338 - 384
Target Start/End: Original strand, 3090687 - 3090733
Alignment:
Q  338 tgattaaagtgatattgattgatgtgactattttatttatcttttaa 384  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  3090687 tgattaaagtgatattgattgatgtgactattttatttatcttttaa 3090733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 258 - 307
Target Start/End: Original strand, 3090608 - 3090657
Alignment:
Q  258 gagaaactcttacttggtcacaagaccaacacctcatatttagacacaca 307  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  3090608 gagaaactcttacatggtcacaagaccaacacctcatatttagacacaca 3090657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 340 - 384
Target Start/End: Complemental strand, 48443635 - 48443591
Alignment:
Q  340 attaaagtgatattgattgatgtgactattttatttatcttttaa 384  Q
    ||||||||||| |||||||||||||||||||||||||||||||||    
T  48443635 attaaagtgatgttgattgatgtgactattttatttatcttttaa 48443591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 338 - 384
Target Start/End: Complemental strand, 13878174 - 13878128
Alignment:
Q  338 tgattaaagtgatattgattgatgtgactattttatttatcttttaa 384  Q
    |||||||| |||||||||||||||||||||||| |||||||||||||    
T  13878174 tgattaaaatgatattgattgatgtgactatttaatttatcttttaa 13878128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 338 - 384
Target Start/End: Complemental strand, 37035938 - 37035892
Alignment:
Q  338 tgattaaagtgatattgattgatgtgactattttatttatcttttaa 384  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||    
T  37035938 tgattaaaatgatattgattgatgtgactgttttatttatcttttaa 37035892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 258 - 308
Target Start/End: Complemental strand, 48443717 - 48443667
Alignment:
Q  258 gagaaactcttacttggtcacaagaccaacacctcatatttagacacacac 308  Q
    ||||||||||| ||| |||||||||||||||||||| ||||||||||||||    
T  48443717 gagaaactcttgcttagtcacaagaccaacacctcacatttagacacacac 48443667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 338 - 384
Target Start/End: Original strand, 12139642 - 12139688
Alignment:
Q  338 tgattaaagtgatattgattgatgtgactattttatttatcttttaa 384  Q
    |||||||| | |||||||||||||||||| |||||||||||||||||    
T  12139642 tgattaaaataatattgattgatgtgactgttttatttatcttttaa 12139688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 306
Target Start/End: Original strand, 12139563 - 12139611
Alignment:
Q  258 gagaaactcttacttggtcacaagaccaacacctcatatttagacacac 306  Q
    |||||||||||||||||||||| ||||||||| ||| |||||| |||||    
T  12139563 gagaaactcttacttggtcacatgaccaacacatcacatttaggcacac 12139611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 342 - 381
Target Start/End: Original strand, 41751916 - 41751955
Alignment:
Q  342 taaagtgatattgattgatgtgactattttatttatcttt 381  Q
    |||| ||||||| |||||||||||||||||||||||||||    
T  41751916 taaaatgatattaattgatgtgactattttatttatcttt 41751955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 383
Target Start/End: Complemental strand, 11579983 - 11579939
Alignment:
Q  339 gattaaagtgatattgattgatgtgactattttatttatctttta 383  Q
    ||||||||| ||||| |||||||||| || |||||||||||||||    
T  11579983 gattaaagtaatattaattgatgtgattactttatttatctttta 11579939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 258 - 316
Target Start/End: Original strand, 52111350 - 52111408
Alignment:
Q  258 gagaaactcttacttggtcacaagaccaacacctcatatttagacacacacacaagaag 316  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  52111350 gagaaactcttacttgatcacaagaccaacacctcacatttagacacacacacaagaag 52111408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 340 - 384
Target Start/End: Original strand, 25724231 - 25724275
Alignment:
Q  340 attaaagtgatattgattgatgtgactattttatttatcttttaa 384  Q
    |||||||||||||| ||||||||||||||||||||||||||||||    
T  25724231 attaaagtgatattaattgatgtgactattttatttatcttttaa 25724275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 338 - 384
Target Start/End: Original strand, 46668885 - 46668931
Alignment:
Q  338 tgattaaagtgatattgattgatgtgactattttatttatcttttaa 384  Q
    |||||||||||||||||||| | ||||||||||||||||||||||||    
T  46668885 tgattaaagtgatattgattaacgtgactattttatttatcttttaa 46668931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 258 - 307
Target Start/End: Original strand, 46668805 - 46668854
Alignment:
Q  258 gagaaactcttacttggtcacaagaccaacacctcatatttagacacaca 307  Q
    |||||||||||||||||||||||||||||| ||||| |||||| ||||||    
T  46668805 gagaaactcttacttggtcacaagaccaacgcctcacatttaggcacaca 46668854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 338 - 383
Target Start/End: Original strand, 52111430 - 52111475
Alignment:
Q  338 tgattaaagtgatattgattgatgtgactattttatttatctttta 383  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||    
T  52111430 tgattaaagggatattgattaatgtgactattttatttatctttta 52111475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 339 - 384
Target Start/End: Complemental strand, 52113251 - 52113206
Alignment:
Q  339 gattaaagtgatattgattgatgtgactattttatttatcttttaa 384  Q
    |||||||||||||||  ||||| || ||||||||||||||||||||    
T  52113251 gattaaagtgatattagttgatttgtctattttatttatcttttaa 52113206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 338 - 384
Target Start/End: Original strand, 5729670 - 5729716
Alignment:
Q  338 tgattaaagtgatattgattgatgtgactattttatttatcttttaa 384  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||    
T  5729670 tgattaaagtggtattgattgatgtgactattttatttatcttttaa 5729716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 338 - 384
Target Start/End: Original strand, 5729877 - 5729923
Alignment:
Q  338 tgattaaagtgatattgattgatgtgactattttatttatcttttaa 384  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||    
T  5729877 tgattaaagtgatattgattgatgtgattattttatttatcttttaa 5729923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 259 - 308
Target Start/End: Complemental strand, 6181466 - 6181417
Alignment:
Q  259 agaaactcttacttggtcacaagaccaacacctcatatttagacacacac 308  Q
    |||||||||||||| |||||||||||||||||||| |||||| |||||||    
T  6181466 agaaactcttacttagtcacaagaccaacacctcacatttaggcacacac 6181417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 257 - 318
Target Start/End: Complemental strand, 20521704 - 20521643
Alignment:
Q  257 cgagaaactcttacttggtcacaagaccaacacctcatatttagacacacacacaagaagct 318  Q
    ||||||||||||||||  ||||| |||||||||||||||||||  ||||||| || ||||||    
T  20521704 cgagaaactcttacttaatcacaggaccaacacctcatatttaagcacacacccatgaagct 20521643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 381
Target Start/End: Complemental strand, 21431379 - 21431337
Alignment:
Q  339 gattaaagtgatattgattgatgtgactattttatttatcttt 381  Q
    |||| ||||||| || |||||||||||||||||||||||||||    
T  21431379 gattgaagtgatgttaattgatgtgactattttatttatcttt 21431337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 346 - 383
Target Start/End: Complemental strand, 24099761 - 24099724
Alignment:
Q  346 gtgatattgattgatgtgactattttatttatctttta 383  Q
    |||||||| |||||||||| ||||||||||||||||||    
T  24099761 gtgatattaattgatgtgaatattttatttatctttta 24099724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 338 - 384
Target Start/End: Original strand, 10243153 - 10243199
Alignment:
Q  338 tgattaaagtgatattgattgatgtgactattttatttatcttttaa 384  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||    
T  10243153 tgattaaattgatattgattgatgtgactattttatttatcttttaa 10243199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 338 - 384
Target Start/End: Original strand, 17886728 - 17886774
Alignment:
Q  338 tgattaaagtgatattgattgatgtgactattttatttatcttttaa 384  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||    
T  17886728 tgattaaagtgatattgattgatgtgattattttatttatcttttaa 17886774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 259 - 307
Target Start/End: Original strand, 10243074 - 10243122
Alignment:
Q  259 agaaactcttacttggtcacaagaccaacacctcatatttagacacaca 307  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  10243074 agaaactcttacttggtcacaggaccaacacctcacatttagacacaca 10243122  T

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Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 340 - 384
Target Start/End: Complemental strand, 36438059 - 36438015
Alignment:
Q  340 attaaagtgatattgattgatgtgactattttatttatcttttaa 384  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  36438059 attaaagtgatattgattgatgtaactattttatttatcttttaa 36438015  T

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Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 342 - 381
Target Start/End: Complemental strand, 31386238 - 31386199
Alignment:
Q  342 taaagtgatattgattgatgtgactattttatttatcttt 381  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  31386238 taaagtgatattgattgatgtgactattttatttatcttt 31386199  T

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Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 338 - 384
Target Start/End: Original strand, 4150640 - 4150686
Alignment:
Q  338 tgattaaagtgatattgattgatgtgactattttatttatcttttaa 384  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||    
T  4150640 tgattaaagtaatattgattgatgtgactattttacttatcttttaa 4150686  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 258 - 308
Target Start/End: Complemental strand, 36438139 - 36438089
Alignment:
Q  258 gagaaactcttacttggtcacaagaccaacacctcatatttagacacacac 308  Q
    |||||||||| ||||| |||||||||||||| |||| |||||| |||||||    
T  36438139 gagaaactctaacttgatcacaagaccaacatctcacatttaggcacacac 36438089  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 338 - 384
Target Start/End: Original strand, 53526778 - 53526824
Alignment:
Q  338 tgattaaagtgatattgattgatgtgactattttatttatcttttaa 384  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    
T  53526778 tgattaaagtgatattaattgatgtgactattttatttatcttttaa 53526824  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 340 - 384
Target Start/End: Complemental strand, 9597990 - 9597946
Alignment:
Q  340 attaaagtgatattgattgatgtgactattttatttatcttttaa 384  Q
    ||||||||||| |||||||||||||||||||||||||||||||||    
T  9597990 attaaagtgatgttgattgatgtgactattttatttatcttttaa 9597946  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 342 - 381
Target Start/End: Original strand, 49649677 - 49649716
Alignment:
Q  342 taaagtgatattgattgatgtgactattttatttatcttt 381  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  49649677 taaagtgatattgattgatgtgactattttatttatcttt 49649716  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 339 - 384
Target Start/End: Original strand, 16003970 - 16004015
Alignment:
Q  339 gattaaagtgatattgattgatgtgactattttatttatcttttaa 384  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||    
T  16003970 gattaaagagatattgattgatgtgattattttatttatcttttaa 16004015  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 258 - 318
Target Start/End: Complemental strand, 9598073 - 9598013
Alignment:
Q  258 gagaaactcttacttggtcacaagaccaacacctcatatttagacacacacacaagaagct 318  Q
    ||||||||||| ||| |||||||||||||||||||| |||||| ||||||| || ||||||    
T  9598073 gagaaactcttgcttagtcacaagaccaacacctcacatttaggcacacacccatgaagct 9598013  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 338 - 382
Target Start/End: Complemental strand, 45292233 - 45292189
Alignment:
Q  338 tgattaaagtgatattgattgatgtgactattttatttatctttt 382  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||    
T  45292233 tgattaaagtgatattgattgatttgactattttatttatttttt 45292189  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 338 - 381
Target Start/End: Complemental strand, 33860980 - 33860937
Alignment:
Q  338 tgattaaagtgatattgattgatgtgactattttatttatcttt 381  Q
    ||||| |||||||||  |||||||||||||||||||||||||||    
T  33860980 tgattgaagtgatatcaattgatgtgactattttatttatcttt 33860937  T

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Target: scaffold0504 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 339 - 381
Target Start/End: Complemental strand, 6921 - 6879
Alignment:
Q  339 gattaaagtgatattgattgatgtgactattttatttatcttt 381  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  6921 gattaaagtgatattgattgatgtgactaatttatttatcttt 6879  T

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Target: scaffold0154 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 339 - 381
Target Start/End: Complemental strand, 11036 - 10994
Alignment:
Q  339 gattaaagtgatattgattgatgtgactattttatttatcttt 381  Q
    ||||||||||||||| |||||||||||||||||||||||||||    
T  11036 gattaaagtgatattaattgatgtgactattttatttatcttt 10994  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 338 - 384
Target Start/End: Complemental strand, 33222646 - 33222600
Alignment:
Q  338 tgattaaagtgatattgattgatgtgactattttatttatcttttaa 384  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||    
T  33222646 tgattaaagtgatattgattgatgcgactattttatttattttttaa 33222600  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 342 - 381
Target Start/End: Original strand, 41021137 - 41021176
Alignment:
Q  342 taaagtgatattgattgatgtgactattttatttatcttt 381  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  41021137 taaaatgatattgattgatgtgactattttatttatcttt 41021176  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 338 - 384
Target Start/End: Original strand, 2486656 - 2486702
Alignment:
Q  338 tgattaaagtgatattgattgatgtgactattttatttatcttttaa 384  Q
    |||||||||||||||| ||| ||||||||||||||||||| ||||||    
T  2486656 tgattaaagtgatattaattaatgtgactattttatttattttttaa 2486702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 263 - 318
Target Start/End: Original strand, 2486581 - 2486636
Alignment:
Q  263 actcttacttggtcacaagaccaacacctcatatttagacacacacacaagaagct 318  Q
    ||||||||||||| ||| ||||||||||||||||||||  |||||| || ||||||    
T  2486581 actcttacttggttacaggaccaacacctcatatttaggtacacactcatgaagct 2486636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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