View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5569_low_19 (Length: 342)
Name: NF5569_low_19
Description: NF5569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5569_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 6937111 - 6936773
Alignment:
| Q |
1 |
cagtgatgtcgtgattttgttgaagcatctagctttttacaaaatcacggtggcacactgtaatcatgtcagacctcattgtcaatccaaacatgcacta |
100 |
Q |
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| T |
6937111 |
cagtgatgtcgtgattttgttgaagcatctagctttttacaaaatcacggtggcacaatgtaatcatgtcagacctcattgtcaatccaaacatgcacta |
6937012 |
T |
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| Q |
101 |
atttggtgaatattccatctggtctattagggatatcataattttcactatcatgggatatgcttatttcttttaccatgcaatttttgtggataataca |
200 |
Q |
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| T |
6937011 |
atttggtgaatattccatttggtctattagggatatcataattttcactatcatgggatatgcttatttcttttaccatgcaatttttgtggataataca |
6936912 |
T |
|
| Q |
201 |
aattactaggtatgaagtt-atgactaattgactatatttttggaattggaataagatgtggcatattcccttgataatactgannnnnnngtataaagc |
299 |
Q |
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| T |
6936911 |
aattactaggtatgaagttaatgactaattgactatatttttggaattggaataagatgtggcatattcccttgataatactgatttttttgtataaagc |
6936812 |
T |
|
| Q |
300 |
atgttctatggctaaacttctgtttgctagaataatcta |
338 |
Q |
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| T |
6936811 |
atgttctatggctaaacttctgtttgctagaataatcta |
6936773 |
T |
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