View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5569_low_25 (Length: 264)
Name: NF5569_low_25
Description: NF5569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5569_low_25 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 16 - 246
Target Start/End: Original strand, 41721605 - 41721834
Alignment:
| Q |
16 |
attccatcgtcaagtctaaaattacaacatggtatcgtatatgttcaagtgagattcaaacgaagctttaattacctctaaagttggtcagtagaggatg |
115 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
41721605 |
attccatcgtcaagtctaaaactacaacatggtatcgtatatgttcaagtgagattcaaacgaagctttaattacctctaaagttg-tcagtagaggatg |
41721703 |
T |
|
| Q |
116 |
aaatgcacaactcaattggacaatctttcacaaaattaattagtatgttttcatcatatcactttcatgcatactaaagcagattgtactgcaccaatgt |
215 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41721704 |
aaatgcacaactcaattggaccatctttcacaaaattaattagtatgttttcatcatatcactttcatgcatactaaagcagattgtactgcaccaatgt |
41721803 |
T |
|
| Q |
216 |
tgaagaataaacggcccccaacccgagttcg |
246 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |
|
|
| T |
41721804 |
tgaagaataaacggcccccaacctgagttcg |
41721834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University