View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5569_low_27 (Length: 251)
Name: NF5569_low_27
Description: NF5569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5569_low_27 |
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| [»] scaffold0147 (1 HSPs) |
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Alignment Details
Target: scaffold0147 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 5 - 244
Target Start/End: Original strand, 10696 - 10935
Alignment:
| Q |
5 |
tcgcttgcttacagaacctggtcatggagttgttctcaaaatgacaagagtttaaacaacaatgtaattaaaatacttctcccgttgttcattaggtttc |
104 |
Q |
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| T |
10696 |
tcgcttgcttacagaacctggtcatggagttgttctcaaaatgacaagagtttaagcaacaatgtaattaaaatacttctcccgttgttcgttaggtttc |
10795 |
T |
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| Q |
105 |
ctttttcattttccttgtgaaggttactattatagtaataattaataagacaaacaattctctttcaaatcaatgatgagaacaacatgtgcaatgttat |
204 |
Q |
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| T |
10796 |
ctttttcattttccttgtgaaggttactattatagtaataattaataagacaaacagttctctttcaaatcaatgatgagaacaacatgtgcaatgttat |
10895 |
T |
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| Q |
205 |
tacctaggacttttgaaccatttgcatttctcctttgctt |
244 |
Q |
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| T |
10896 |
cacctaggacttttgaaccatttgcatttctcttttgctt |
10935 |
T |
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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 114
Target Start/End: Original strand, 19208448 - 19208549
Alignment:
| Q |
17 |
agaacctggtcatggagttgttctcaaaatgacaagagttta----aacaacaatgtaattaaaatacttctcccgttgttcattaggtttcctttttca |
112 |
Q |
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||||||||||||||||||||||||||| ||||||||| |||| | ||||||| ||| |||||| || |||| ||||||||| || ||||||||||| |
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| T |
19208448 |
agaacctggtcatggagttgttctcaatatgacaagaatttagttgagcaacaatttaactaaaatgattttccccttgttcattggggttcctttttca |
19208547 |
T |
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| Q |
113 |
tt |
114 |
Q |
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| T |
19208548 |
tt |
19208549 |
T |
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