View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5569_low_33 (Length: 237)
Name: NF5569_low_33
Description: NF5569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5569_low_33 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 47644130 - 47643929
Alignment:
| Q |
1 |
attaattaaaggaggtgcgagtattaaagagagaaaaaagaagtaatatgtgcctattttataatggaaaacgcaagtgggcattgtatccaatttttgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47644130 |
attaattaaaggaggtgcgagtattaaagagagaaaaaagaagtaatatgtgcctattttataatggaaaacgcaagtgggcattgtatccaatttttgg |
47644031 |
T |
|
| Q |
101 |
tgcataacgagacgagggattgaagagctacgacatgtcaaacaacaacaatgatttgaatgaaaattcaggagtaacatggacaacaacataactcttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47644030 |
tgcataacgagacgagggattgaagagctacgacatgtcaaacaacaacaatgatttgaatgaaaattcaggagtaacatggacaacaacataactcttg |
47643931 |
T |
|
| Q |
201 |
gg |
202 |
Q |
| |
|
|| |
|
|
| T |
47643930 |
gg |
47643929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 122 - 174
Target Start/End: Original strand, 34065770 - 34065821
Alignment:
| Q |
122 |
gaagagctacgacatgtcaaacaacaacaatgatttgaatgaaaattcaggag |
174 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
34065770 |
gaagagctacggcatg-caaacaacaacaatgatttgaaagaaaattcaggag |
34065821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 174
Target Start/End: Original strand, 23107437 - 23107473
Alignment:
| Q |
138 |
tcaaacaacaacaatgatttgaatgaaaattcaggag |
174 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
23107437 |
tcaaacaacaacaatgatttgaaagaaaattcaggag |
23107473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 174
Target Start/End: Complemental strand, 36223124 - 36223073
Alignment:
| Q |
122 |
gaagagctacgacatgtcaaacaacaacaatgatttgaatgaaaattcaggag |
174 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
36223124 |
gaagagctacggcatg-caaacaacaacaatgatttgaaacaaaattcaggag |
36223073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 170
Target Start/End: Complemental strand, 29613740 - 29613672
Alignment:
| Q |
101 |
tgcataacgagacgagggattgaagagctacgacatgtcaaacaacaacaatgatttgaatgaaaattca |
170 |
Q |
| |
|
|||||||||||| ||||||||||| |||||| |||| |||||||| ||| ||||| ||| ||||||||| |
|
|
| T |
29613740 |
tgcataacgagaagagggattgaatagctacagcatgccaaacaac-acagtgattagaaagaaaattca |
29613672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University