View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5569_low_34 (Length: 235)
Name: NF5569_low_34
Description: NF5569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5569_low_34 |
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| [»] scaffold0126 (1 HSPs) |
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Alignment Details
Target: scaffold0126 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: scaffold0126
Description:
Target: scaffold0126; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 5 - 212
Target Start/End: Original strand, 20646 - 20853
Alignment:
| Q |
5 |
tggacttatgtatatgggttgtcaaaccctcaaaagggtaaggctaacacttaggcctccaaattgttttttaatttattggatacacctcttattgtag |
104 |
Q |
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| T |
20646 |
tggacttatgtatatgggttgtcaaaccctcaaaagggtaaggctaacacttaggcctccaaattgttttttaatttattggatacacctcttattgtac |
20745 |
T |
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| Q |
105 |
ttttcaacattaaaactataaaaatttcatcaaatataaattttattttaacaaagattaaattgattaactttgtcgtcaacttaaaaagaagtacgaa |
204 |
Q |
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| T |
20746 |
ttttcaacattaaaactataaaaatttcatcaaaaataaattttattttaacaaagattaaattgattaactttgtcgtcaacttaaaaagaagtacgaa |
20845 |
T |
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| Q |
205 |
actaaatc |
212 |
Q |
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| T |
20846 |
accaaatc |
20853 |
T |
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Target: chr1 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 49 - 211
Target Start/End: Complemental strand, 24979169 - 24979007
Alignment:
| Q |
49 |
taacacttaggcctccaaattgttttttaatttattggatacacctcttattgtagttttcaacattaaaactataaaaatttcatcaaatataaatttt |
148 |
Q |
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|||||||| ||||||| | ||||||||||||||||||||||||| |||||||| | |||||||||||||| |||||||||||||||||| ||||||||| |
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| T |
24979169 |
taacactttggcctcctatttgttttttaatttattggatacacttcttattgcacttttcaacattaaatttataaaaatttcatcaaaaataaatttt |
24979070 |
T |
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| Q |
149 |
attttaacaaagattaaattgattaactttgtcgtcaacttaaaaagaagtacgaaactaaat |
211 |
Q |
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| T |
24979069 |
attttaacaaagattaaattgattaactttcttgtcaacttaaaaagaagtaggaaaccaaat |
24979007 |
T |
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