View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5569_low_35 (Length: 227)
Name: NF5569_low_35
Description: NF5569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5569_low_35 |
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| [»] scaffold0126 (1 HSPs) |
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Alignment Details
Target: scaffold0126 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: scaffold0126
Description:
Target: scaffold0126; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 3 - 167
Target Start/End: Complemental strand, 20090 - 19926
Alignment:
| Q |
3 |
aactttgctaaataataatcgattttaattacaagtctccaacttataatttatttgaatgatgtattcaaagtaatcaatcacaacaagaataagaaac |
102 |
Q |
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| T |
20090 |
aactttgctaaataataatcgattttaattacaagtctccaactgataatttatttgaatgatctattcaaagtaatcaatcacaacaagaataagaaac |
19991 |
T |
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| Q |
103 |
ttaggaatcattaggtagacaacattatcataatcattatatttgattttaatctctcaagcaac |
167 |
Q |
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| T |
19990 |
ttaggaatcattaggtagacaacattatcataatcattatatttgattttaatctctcaagcaac |
19926 |
T |
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Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 15 - 167
Target Start/End: Original strand, 24979653 - 24979799
Alignment:
| Q |
15 |
taataatcgattttaattacaagtctccaacttataatttatttgaatgatgtattcaaagtaatcaatcacaacaagaataagaaacttaggaatcatt |
114 |
Q |
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| T |
24979653 |
taataatcgattttaattacaagtctccaactgataatttatttgaatgatgtattcaaagtaatcaatcacaacaagaataagaaactta------att |
24979746 |
T |
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| Q |
115 |
aggtagacaacattatcataatcattatatttgattttaatctctcaagcaac |
167 |
Q |
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| T |
24979747 |
aggtagaaaacattatcataatcattatatttgattttaatctctcaagcaac |
24979799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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