View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5569_low_7 (Length: 458)
Name: NF5569_low_7
Description: NF5569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5569_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 17 - 442
Target Start/End: Complemental strand, 792787 - 792362
Alignment:
| Q |
17 |
atgaacaacatttacaataaagccaatacggcccaaaaaataaaactcatcacgggccaatgctagtacaacacacattaaaaagtaagctaattgcgaa |
116 |
Q |
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| T |
792787 |
atgaacaacatttacaataaagccaatacgacccaaaaaataaaactcatcacgggccaatgctagtacaacacacattaaaaagtaaactaattgagaa |
792688 |
T |
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| Q |
117 |
acacattattttaccatgattaaatgagagtgtcattttaaaaatttgtacatataaattaatatctccaagttacatgaagtccacaaaataaattaaa |
216 |
Q |
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| T |
792687 |
acacattattttaccatgattaaatgagagtgtcattttaaaaatttgtacatagaaattaatatctccaagttacatgaagtccacaaaataaattaaa |
792588 |
T |
|
| Q |
217 |
atgtgcgttggattttcagtcttggtttcaatcatattgatttggatctttgcaagccactggatcttatatacaatttaatttccacttgttaattaaa |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
792587 |
atgtgcgttggattttcagtcttggtttcaatcatattgatttggatctttgcaagccactggatctcatatacaatttaatttccacttgttaattaaa |
792488 |
T |
|
| Q |
317 |
gtattcacaattattttaccatccatcttttcataaaagaatattcgttcttttctcattatttcatagtgaatagtcctgaccataataatcaagtaaa |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
792487 |
gtattcacaattattttaccatccatcttttcataaaagaatattcgttcttttctcattatttcatagtgaataggcctgaccataataatcaagtaaa |
792388 |
T |
|
| Q |
417 |
acaaggagattttaagtacatatatt |
442 |
Q |
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|||||||||||||||||||||||||| |
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| T |
792387 |
acaaggagattttaagtacatatatt |
792362 |
T |
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