View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5569_low_8 (Length: 445)
Name: NF5569_low_8
Description: NF5569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5569_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 89; Significance: 1e-42; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 125 - 357
Target Start/End: Original strand, 33491993 - 33492247
Alignment:
| Q |
125 |
gttgattcgatgacgctgaacatgatgtcattttgacatgaagcagaaactaagataggttaaaaattagaaac----------------------tggt |
202 |
Q |
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| T |
33491993 |
gttgatccgatgacgctgaatatgatgtcattttgacatgaagcagaaactgagataggttaaaaattagaaactagtatgacatgaatcagaaactggt |
33492092 |
T |
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| Q |
203 |
atctcagcaaggtac-atgtattcattttgtcatttgatgtcattttggtatgtcagttgggtttcatcaaggctttctcaaacctttaatagtggatga |
301 |
Q |
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| T |
33492093 |
atgttagcaagataccatgtattcattttgtc-tatgatgtcattttggtatgtcagttgggtttcatcaaggctctctcaaacctttaataatggagaa |
33492191 |
T |
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| Q |
302 |
ttactgtcaaccaaagccgaaactctagctggagtaattgaagagggtacaataaa |
357 |
Q |
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| T |
33492192 |
ttactgtcaactgaagccggaactttagctcgagcaattgcatatggtacaataaa |
33492247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 300 - 433
Target Start/End: Complemental strand, 28809504 - 28809371
Alignment:
| Q |
300 |
gattactgtcaaccaaagccgaaactctagctggagtaattgaagagggtacaataaaaatttcagggcatttcagttaaagtaaactactcaatccaac |
399 |
Q |
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| T |
28809504 |
gattactgtcaaccgaagccggaactctagctcgagtaattgcagatggtacaataacaatttcagggtatttcagtgaaagtaaactactcaatacaac |
28809405 |
T |
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| Q |
400 |
cttacttccttcactcctcatatgaatttcatcc |
433 |
Q |
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| T |
28809404 |
cttactacctgcactcctcatctgcatctcatcc |
28809371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 33413730 - 33413777
Alignment:
| Q |
18 |
agaaatttcatttttgaactttccaactaggttacaattagcatgtca |
65 |
Q |
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| T |
33413730 |
agaaatttcatttttgaactttccaactaggttacaattagcatgtca |
33413777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 33491945 - 33491993
Alignment:
| Q |
20 |
aaatttcatttttgaactttccaactaggttacaattagcatgtcattg |
68 |
Q |
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| T |
33491945 |
aaattccatttttgaactttacaactaggttacaattagcatgtcattg |
33491993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 33420876 - 33420948
Alignment:
| Q |
20 |
aaatttcatttttgaactttccaactaggttacaattagcatgtcattgcggaagagatacaatatatgttca |
92 |
Q |
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| T |
33420876 |
aaattacatgtttgaactttacaattaggttacagttagcatgacattgtggaagagatacaacacatgttca |
33420948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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