View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5570-Insertion-1 (Length: 1035)

Name: NF5570-Insertion-1
Description: NF5570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5570-Insertion-1
NF5570-Insertion-1
[»] chr7 (8 HSPs)
chr7 (339-1035)||(40206565-40207258)
chr7 (8-301)||(19910102-19910397)
chr7 (7-135)||(47235875-47236005)
chr7 (8-76)||(6036761-6036829)
chr7 (8-108)||(34821142-34821242)
chr7 (256-301)||(6037062-6037107)
chr7 (252-300)||(47236173-47236221)
chr7 (11-98)||(27705412-27705498)
[»] chr8 (10 HSPs)
chr8 (8-242)||(33828209-33828446)
chr8 (11-288)||(16366660-16366945)
chr8 (7-104)||(26534379-26534476)
chr8 (153-300)||(36734666-36734813)
chr8 (7-135)||(25246990-25247120)
chr8 (8-122)||(29191136-29191253)
chr8 (8-104)||(41877420-41877515)
chr8 (25-171)||(42664141-42664290)
chr8 (154-291)||(26534529-26534665)
chr8 (24-69)||(10208042-10208087)
[»] scaffold0005 (1 HSPs)
scaffold0005 (11-300)||(270244-270533)
[»] chr5 (5 HSPs)
chr5 (8-291)||(15470948-15471233)
chr5 (8-236)||(14144810-14145045)
chr5 (11-169)||(35951919-35952081)
chr5 (8-171)||(29790572-29790737)
chr5 (15-75)||(33140394-33140454)
[»] chr1 (5 HSPs)
chr1 (7-291)||(31066954-31067243)
chr1 (12-135)||(7093531-7093656)
chr1 (8-135)||(44508246-44508376)
chr1 (8-165)||(15962305-15962466)
chr1 (252-291)||(15962583-15962622)
[»] chr2 (11 HSPs)
chr2 (8-300)||(29685999-29686294)
chr2 (7-172)||(18061115-18061284)
chr2 (15-170)||(43559636-43559795)
chr2 (8-171)||(19865874-19866039)
chr2 (8-171)||(19870775-19870940)
chr2 (8-171)||(19875676-19875841)
chr2 (11-170)||(45040067-45040229)
chr2 (7-69)||(33226775-33226838)
chr2 (252-291)||(43559937-43559976)
chr2 (7-72)||(5608489-5608554)
chr2 (109-177)||(21017204-21017273)
[»] chr3 (8 HSPs)
chr3 (15-172)||(46091797-46091958)
chr3 (15-122)||(570950-571062)
chr3 (10-135)||(39650412-39650540)
chr3 (8-171)||(45483757-45483921)
chr3 (8-122)||(26445921-26446037)
chr3 (43-134)||(28521495-28521589)
chr3 (17-169)||(33087858-33088013)
chr3 (17-135)||(28146816-28146938)
[»] chr4 (8 HSPs)
chr4 (19-170)||(29857392-29857547)
chr4 (7-134)||(55250446-55250576)
chr4 (7-177)||(1101069-1101242)
chr4 (9-146)||(1838565-1838705)
chr4 (10-135)||(47668933-47669061)
chr4 (252-300)||(29857274-29857322)
chr4 (252-290)||(47668748-47668786)
chr4 (9-58)||(46963768-46963816)
[»] scaffold0406 (1 HSPs)
scaffold0406 (7-145)||(12667-12807)
[»] chr6 (1 HSPs)
chr6 (8-135)||(4017048-4017178)
[»] scaffold0258 (1 HSPs)
scaffold0258 (8-104)||(18141-18237)
[»] scaffold0257 (1 HSPs)
scaffold0257 (36-134)||(16484-16586)


Alignment Details
Target: chr7 (Bit Score: 507; Significance: 0; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 339 - 1035
Target Start/End: Original strand, 40206565 - 40207258
Alignment:
Q  339 gtgaacatttgaggaatagcctatttgttaatttcaaaagaaatttgaacttgacattttaatttaaaccaatgcatgattgaagtgtttcgaacaagga 438  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  40206565 gtgaacatttgaggaatagcctatatgttaatttcaaaagaaatttgaacttgacattttaatttaaaccaatgcatgattgaagtgtttcga-caagga 40206663  T
Q  439 aatatccgttactaacatttcaagacctgaaaaacgggagagcatcatgattgtgcatgtctctctagttaatgtcttctatgaactacaacctatttat 538  Q
    |||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40206664 aatatccgttactaacatttcaagacctgaaaaacgggagagcat----attgtgcatgtctctctagttaatgtcttctatgaactacaacctatttat 40206759  T
Q  539 tcaaaacaatcactcacagtcacaatcacgtgatgtttcagagaatcaatatgatacattctttctattaatcggtattatgcaggtattttaaaagttt 638  Q
    ||||||||||||||||||      |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40206760 tcaaaacaatcactcaca------atcacgtgatgtttcagacaaccaatatgatacattctttctattaatcggtattatgcaggtattttaaaagttt 40206853  T
Q  639 ttaaaataaaaccctaaatgtcgaacccacaaagaattgcttcaattacaagtcactttctttttagactattaaggcgaaccaatttgtttgaagttaa 738  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  40206854 ttaaaataaaaccctaaatctcgaacccacaaagaattgcttcaattacaagtcactctctttttagactattaaggcgaaccaatttgtttgaagttaa 40206953  T
Q  739 gtcagnnnnnnnn---aataaactaaactagttcatccaaattaacacgaagagaatcaacctaagacaacacatttcaaatcctaaaccaacaccacct 835  Q
    | |||           |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||| |||| |||||||||||     
T  40206954 gacagtttttttttttaataaactaaactagtccatccaaattaacacgaggagaatcaacctaagacaacacattccaaattctaagccaacaccaccg 40207053  T
Q  836 actaggatgatttgacgacaacttcgtttcatataatataaccttcaatagatattcctaaatggtccctcgaagaccgacgttacccccatcatatgat 935  Q
    | |||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  40207054 attaggatgatttgacgacaacttcgcttcatataatataaccttcaacaaatattcctaaatggtgccttgaagaccgacgttacccccatcatatgat 40207153  T
Q  936 taccacattaaagaattaagtacttctaccaaataccaataagttgct-ata-cccactgcatgag-taaata-tggaaataaagc-actcatgctgcat 1030  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||| |||||||||||| |||||||||||||    
T  40207154 taccacattaaagaattaagtacttctaccaaataccaataagttgctaataccccactgcatgagttaaatattggaaataaagcaactcatgctgcat 40207253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 8 - 301
Target Start/End: Original strand, 19910102 - 19910397
Alignment:
Q  8 tagctaccccattaaaatattatttggctactccaaacaattttgttggttaaaacagagatgatattataaaaacattgataatctattttgtttagtg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  19910102 tagctaccccattaaaatattatttggctactccaaacaattttgttggttaaaacagagatgatattataaaaatattgataatctattttgtttagtg 19910201  T
Q  108 tttatggataaatttgacttctaaaaacaccttagagcacaac-tttataaataactattgttagcgtttannnnnnnngttgcagtttcattaattatg 206  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||        |||||||||||||||||||||    
T  19910202 tttatggataaatttgacttctaaaaacaccttagagcacaacttttataaataactattgttagcgtttattttttttgttgcagtttcattaattatg 19910301  T
Q  207 agtaaaattaattaagtttcgtatattagtgtttaa-nnnnnnnnncttctttatatttggccccctcgtaaaaatagtgctagctacgtcgctgt 301  Q
    ||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19910302 agtaaaattaattaagtttcgtatattagtgtttaatttttttcttcttctttatatttggccccctcgtaaaaatagtgctagctacgtcgctgt 19910397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 7 - 135
Target Start/End: Original strand, 47235875 - 47236005
Alignment:
Q  7 atagctaccccattaaaatattatttggctactccaaacaattttgttggttaaaacagagatgatattataaaaacattgataatctattttgtttagt 106  Q
    |||||||| ||||||| |||||||||||||| ||||||||||||||||| || ||| ||| || |||||| | ||| ||||||||||||||| |||||||    
T  47235875 atagctactccattaatatattatttggctattccaaacaattttgttgatttaaagagatattatatta-acaaaaattgataatctatttagtttagt 47235973  T
Q  107 gt---ttatggataaatttgacttctaaaaac 135  Q
    ||   |||| |||||||||| ||||| |||||    
T  47235974 gtcaattatagataaatttgtcttcttaaaac 47236005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 6036761 - 6036829
Alignment:
Q  8 tagctaccccattaaaatattatttggctactccaaacaattttgttggttaaaacagagatgatatta 76  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||||| |||  ||||||||||||    
T  6036761 tagctaccccattaaattattattcggctactccaaacaattttgttggttcaaagggagatgatatta 6036829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 108
Target Start/End: Complemental strand, 34821242 - 34821142
Alignment:
Q  8 tagctaccccattaaaatattatttggctactccaaacaattttgttggttaaaacagagatgatattataaaaacattgataatctattttgtttagtg 107  Q
    ||||||||||||| | |||||| |||  ||||||||||||||||||||||| ||| || || ||| |||  | || ||||||||||||||| ||| ||||    
T  34821242 tagctaccccattgatatattacttgattactccaaacaattttgttggtttaaagagggacgatgttagtataatattgataatctatttagttaagtg 34821143  T
Q  108 t 108  Q
    |    
T  34821142 t 34821142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 301
Target Start/End: Original strand, 6037062 - 6037107
Alignment:
Q  256 tttatatttggccccctcgtaaaaatagtgctagctacgtcgctgt 301  Q
    ||||||||||||| |||||||||||| ||||||||| |||||||||    
T  6037062 tttatatttggcctcctcgtaaaaattgtgctagcttcgtcgctgt 6037107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 252 - 300
Target Start/End: Original strand, 47236173 - 47236221
Alignment:
Q  252 cttctttatatttggccccctcgtaaaaatagtgctagctacgtcgctg 300  Q
    ||||||||||||||||||||||||||||||  |||||||| || |||||    
T  47236173 cttctttatatttggccccctcgtaaaaattatgctagcttcgccgctg 47236221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 98
Target Start/End: Complemental strand, 27705498 - 27705412
Alignment:
Q  11 ctaccccattaaaatattatttggctactccaaacaattttgttggttaaaacagagatgatattataaaaacattgataatctattt 98  Q
    ||||||| |||| || |||||||  |||| |||||||||||||||||| ||| | | || |||||| ||||| |||||||||||||||    
T  27705498 ctaccccgttaatatgttatttgattacttcaaacaattttgttggtttaaa-aaaaataatattaaaaaaatattgataatctattt 27705412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 137; Significance: 5e-71; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 137; E-Value: 5e-71
Query Start/End: Original strand, 8 - 242
Target Start/End: Original strand, 33828209 - 33828446
Alignment:
Q  8 tagctaccccattaaaatattatttggctactccaaacaattttgttggttaaaacagagatgatattataaaaacattgataatctattttgtttagtg 107  Q
    ||||||||||||||| ||||| |||| |||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||| ||||||||    
T  33828209 tagctaccccattaagatattttttgactactccaaacaattttgttggttaaaataaagatgatattataaaaatattgataatctatttagtttagtg 33828308  T
Q  108 t---ttatggataaatttgacttctaaaaacaccttagagcacaac-tttataaataactattgttagcgtttannnnnnnngttgcagtttcattaatt 203  Q
    |   ||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||| ||||        |||||||||||||||| |    
T  33828309 tcaattatggataaatttgacttctaaaaactccttagagctcaacttttataaataactattgttagcttttattttctttgttgcagtttcattaaat 33828408  T
Q  204 atgagtaaaattaattaagtttcgtatattagtgtttaa 242  Q
    |||||| |||||||||||||||| |||||||||||||||    
T  33828409 atgagt-aaattaattaagtttcatatattagtgtttaa 33828446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 108; E-Value: 1e-53
Query Start/End: Original strand, 11 - 288
Target Start/End: Complemental strand, 16366945 - 16366660
Alignment:
Q  11 ctaccccattaaaatattatttggctactccaaacaattttgttggttaaaacagagatgatattataaaaacattgataatctattttgtttagtgt-- 108  Q
    |||||||||||  || ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||      
T  16366945 ctaccccattatgatgttatttgactactccaaacaattttgttggttaaaatagagatgatattataaaaatattgataatctatttagtttagtgtta 16366846  T
Q  109 -ttatggataaatttgacttctaaaaacaccttagagcacaac-tttataaataactattgttagcgttta----nnnnnnnngttgcagtttcattaat 202  Q
     |||| ||||||||||| || |||||||  ||||| || |||| |||||||||||||||||||| | ||||            ||||||||||| ||||     
T  16366845 attatagataaatttgaattttaaaaacttcttagggctcaacttttataaataactattgttatcttttattttatttttttgttgcagtttcgttaaa 16366746  T
Q  203 tatgagtaaaattaattaagtttcgtatattagtgtttaannnnnnnnncttctttatatttggccccctcgtaaaaatagtgcta 288  Q
    |||||||||||||||||||||||| ||||||| |||||||         |||||||||||||| ||||||| ||||||||||||||    
T  16366745 tatgagtaaaattaattaagtttcatatattaatgtttaattttttcttcttctttatatttgaccccctcataaaaatagtgcta 16366660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 7 - 104
Target Start/End: Original strand, 26534379 - 26534476
Alignment:
Q  7 atagctaccccattaaaatattatttggctactccaaacaattttgttggttaaaacagagatgatattataaaaacattgataatctattttgttta 104  Q
    |||||||||||||||| |||||||||||  |||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||| |||||    
T  26534379 atagctaccccattaagatattatttggtcactccaaacaattttgttggttaaaatagagatggtattataaaaatattgataatctatttagttta 26534476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 153 - 300
Target Start/End: Original strand, 36734666 - 36734813
Alignment:
Q  153 tataaataactattgttagcgtttannnnnnnngttgcagtttcattaattatgagtaaaattaattaagtttcgtatattagtgtttaannnnnnnnnc 252  Q
    ||||||||||||| |||||| ||||        |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||         |    
T  36734666 tataaataactatcgttagcttttattttctttgttgcagtttcattaaatattagtaaaattaattaagtttcgtatattagtgtttaatttgtttttc 36734765  T
Q  253 ttctttatatttggccccctcgtaaaaatagtgctagctacgtcgctg 300  Q
    |||||||||||| |||| ||||||||||||||||||||| || |||||    
T  36734766 ttctttatatttagccctctcgtaaaaatagtgctagcttcgccgctg 36734813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 7 - 135
Target Start/End: Complemental strand, 25247120 - 25246990
Alignment:
Q  7 atagctaccccattaaaatattatttggctactccaaacaattttgttggttaaaacagagatgatattataaaaacattgataatctattttgtttagt 106  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| || ||| ||| || |||||| | ||| ||||||||| ||||| |||||||    
T  25247120 atagctaccccattaatatattatttggctactccaaacaattttgttgatttaaagagatattatatta-acaaaaattgataatatatttagtttagt 25247022  T
Q  107 gt---ttatggataaatttgacttctaaaaac 135  Q
    ||   |||| |||||||||| ||||| |||||    
T  25247021 gtcaattatagataaatttgtcttcttaaaac 25246990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 8 - 122
Target Start/End: Complemental strand, 29191253 - 29191136
Alignment:
Q  8 tagctaccccattaaaatattatttggctactccaaacaattttgttggttaaaacagagatgatattataaaaacattgataatctattttgtttagtg 107  Q
    ||||||| ||||||| |||||||||| |||||||||||||||||||||||| ||| ||||||||||||  | ||| ||||||| | ||||| |||| |||    
T  29191253 tagctactccattaatatattatttgcctactccaaacaattttgttggtttaaaaagagatgatattgcacaaatattgatagtatatttagtttggtg 29191154  T
Q  108 t---ttatggataaattt 122  Q
    |   ||||||||||||||    
T  29191153 tcaattatggataaattt 29191136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 8 - 104
Target Start/End: Original strand, 41877420 - 41877515
Alignment:
Q  8 tagctaccccattaaaatattatttggctactccaaacaattttgttggttaaaacagagatgatattataaaaacattgataatctattttgttta 104  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||| ||| |||  |||| ||| ||||| ||||| |||||    
T  41877420 tagctaccccattaatatattacttggctactccaaacaattttgttggttaaaa-agagacgatcttaataaaatattaataatttatttagttta 41877515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 25 - 171
Target Start/End: Complemental strand, 42664290 - 42664141
Alignment:
Q  25 tattatttggctactccaaacaattttgttggttaaaacagagatgatattataaaaacattgataatctattttgtttagtgt---ttatggataaatt 121  Q
    ||||||||||| |||||||||||||||||||||| ||| || | |||| ||| ||||| | | ||||||||||| |||||||||   ||||  |||||||    
T  42664290 tattatttggccactccaaacaattttgttggtttaaaaagtggtgatttta-aaaaatacttataatctatttagtttagtgtcaattataaataaatt 42664192  T
Q  122 tgacttctaaaaacaccttagagcacaac-tttataaataactattgttag 171  Q
    |||||| | |||||  | ||||| ||||| ||||||||||| |||||||||    
T  42664191 tgactttttaaaacttcatagagtacaacttttataaataattattgttag 42664141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 154 - 291
Target Start/End: Original strand, 26534529 - 26534665
Alignment:
Q  154 ataaataactattgttagcgtttannnnnnnngttgcagtttcattaattatgagtaaaattaattaagtttcgtatattagtgtttaannnnnnnnnct 253  Q
    ||||||||||||||||||| ||||        |||||| ||||||||| |||||||||||||||||| ||||  |||||||||||||||          |    
T  26534529 ataaataactattgttagcttttattttctttgttgcaatttcattaaatatgagtaaaattaattaggttttatatattagtgtttaatttattctt-t 26534627  T
Q  254 tctttatatttggccccctcgtaaaaatagtgctagct 291  Q
    |||||||||||||||||||| |||||| |||| |||||    
T  26534628 tctttatatttggccccctcataaaaacagtggtagct 26534665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 10208087 - 10208042
Alignment:
Q  24 atattatttggctactccaaacaattttgttggttaaaacagagat 69  Q
    ||||| |||| |||||||||||||||||||||||| ||| ||||||    
T  10208087 atattgtttgactactccaaacaattttgttggtttaaagagagat 10208042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 121; Significance: 2e-61; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 11 - 300
Target Start/End: Original strand, 270244 - 270533
Alignment:
Q  11 ctaccccattaaaatattatttggctactccaaacaattttgttggttaaaacagagatgatattataaaaacattgataatctattttgtttagtgt-- 108  Q
    |||||||||||| |||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||| |||||||||||| || |||||||||      
T  270244 ctaccccattaagatattatttggctacttcaaacaattta-ttggttaaaacagagatgatattataaaaatattgataatctacttagtttagtgtca 270342  T
Q  109 -ttatggataaatttgacttctaaaaacaccttagagcacaac-tttataaataactattgttagcgtttannnnnnnngttgcagtttcattaattatg 206  Q
     ||||  ||||||||||||| ||||||| ||||||||| |||| |||||||||||||||| ||||| ||||        ||||||||||||||||  |||    
T  270343 attataaataaatttgacttttaaaaactccttagagctcaacttttataaataactatttttagcttttattttctttgttgcagtttcattaa--atg 270440  T
Q  207 agtaaaattaattaagtttcgtatattagtgtttaannnnnnnnncttctttatatttggccccctcgtaaaaatagtgctagctacgtcgctg 300  Q
    |||||||||||||| |||||||||||||  ||||||         |||||||||||||||||||||||||||||||||| ||||| || |||||    
T  270441 agtaaaattaattaggtttcgtatattaacgtttaa-tttttcttcttctttatatttggccccctcgtaaaaatagtgttagcttcgccgctg 270533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 118; Significance: 1e-59; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 8 - 291
Target Start/End: Complemental strand, 15471233 - 15470948
Alignment:
Q  8 tagctaccccattaaaatattatttggctactccaaacaattttgttggttaaaacagagatgatattataaaaacattgataatctattttgtttagtg 107  Q
    |||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||| ||||||||    
T  15471233 tagctacctcatcaaaatattatttggttactccaaacaattttgttggttaaaacagagatgataatacaaaaatattgataatctatttagtttagtg 15471134  T
Q  108 t---ttatggataaatttgacttctaaaaacaccttagagcacaac-tttataaataactattgttagcgtttannnnnnnngttgcagtttcattaatt 203  Q
    |   |||||||||||||||| |||||||||| | ||||||| |||| |||||||||||||| ||||| | |||         |||| ||||||||||| |    
T  15471133 tcaattatggataaatttgaattctaaaaactcattagagctcaacttttataaataactaatgttaacttttcttttctttgttgtagtttcattaaat 15471034  T
Q  204 atgagtaaaattaattaagtttcgtatattagtgtttaannnnnnnnncttctttatatttggccccctcgtaaaaatagtgctagct 291  Q
    |||||||||||||||||| |||||||||||| | |||||         ||||||||||||||||  |||||||||| |||||||||||    
T  15471033 atgagtaaaattaattaaatttcgtatattaatttttaa--ttttcttcttctttatatttggcatcctcgtaaaattagtgctagct 15470948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 117; E-Value: 5e-59
Query Start/End: Original strand, 8 - 236
Target Start/End: Complemental strand, 14145045 - 14144810
Alignment:
Q  8 tagctaccccattaaaatattatttggctactccaaacaattttgttggttaaaacagagatgatattataaaaacattgataatctattttgtttagtg 107  Q
    |||||||| |||||| |||||||||| | |||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||    
T  14145045 tagctacctcattaagatattatttgaccactccaaataattttgttggttaaaacatagatgatattataaaaatattgataatctatttagtttagtg 14144946  T
Q  108 t------ttatggataaatttgacttctaaaaacaccttagagcacaac-tttataaataactattgttagcgtttannnnnnnngttgcagtttcatta 200  Q
    |      ||||||||||||||||| ||||||||| |||||||||  ||| ||||||||||| |||||||||| ||||        |||||||||||||||    
T  14144945 tcaataattatggataaatttgacctctaaaaactccttagagcttaacttttataaataagtattgttagcttttattttctttgttgcagtttcatta 14144846  T
Q  201 attatgagtaaaattaattaagtttcgtatattagt 236  Q
    | |||||||||||||||||||||||| |||||||||    
T  14144845 aatatgagtaaaattaattaagtttcatatattagt 14144810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 11 - 169
Target Start/End: Complemental strand, 35952081 - 35951919
Alignment:
Q  11 ctaccccattaaaatattatttggctactccaaacaattttgttggttaaaacagagatgatattataaaaacattgataatctattttgtttagtgt-- 108  Q
    |||| ||||| | ||||||||||||||||||||||||||||||||||| ||| ||||||||||||  | ||| ||||||||| ||||| |||||||||      
T  35952081 ctactccattgatatattatttggctactccaaacaattttgttggtttaaaaagagatgatattgaacaaatattgataatatatttagtttagtgtca 35951982  T
Q  109 -ttatggataaatttgacttctaaaaacaccttagagcacaac-tttataaataactattgtt 169  Q
     |||||||||||||| | |||| | ||| |  || ||| |||| |||||||||||||||||||    
T  35951981 attatggataaattttagttcttacaactctataaagctcaacttttataaataactattgtt 35951919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 8 - 171
Target Start/End: Original strand, 29790572 - 29790737
Alignment:
Q  8 tagctaccccattaaaatattatttggctactccaaacaattttgttggttaaaacagagatgatattataaaaacattgataatctattttgtttagtg 107  Q
    |||||||| |||||| |||||||||||| |||||||||||||||||||||| ||| |||||||  ||| |||||| | | ||||||||||| || |||||    
T  29790572 tagctaccacattaatatattatttggccactccaaacaattttgttggtttaaaaagagatg--attttaaaaatacttataatctatttagtctagtg 29790669  T
Q  108 t---ttatggataaatttgacttctaaaaacaccttagagcacaac-tttataaataactattgttag 171  Q
    |   ||||   |||||||||||| | |||||  | || || ||||| ||||||||||| |||||||||    
T  29790670 tcaattataagtaaatttgacttgttaaaacttcataaagtacaacttttataaataattattgttag 29790737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 33140454 - 33140394
Alignment:
Q  15 cccattaaaatattatttggctactccaaacaattttgttggttaaaacagagatgatatt 75  Q
    |||||||| |||||||||||||||||||||||||||| |||||| ||| ||||||||||||    
T  33140454 cccattaatatattatttggctactccaaacaattttattggtttaaagagagatgatatt 33140394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 113; Significance: 1e-56; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 7 - 291
Target Start/End: Complemental strand, 31067243 - 31066954
Alignment:
Q  7 atagctaccccat--taaaatattatttggctactccaaacaattttgttggttaaaacagagatgatattataaaaacattgataatctattttgttta 104  Q
    |||||||||||||  ||| |||||||||||| |||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||  ||||    
T  31067243 atagctaccccatattaagatattatttggccactctaaacaattttattggttaaaacagagataatattataaaaacattgataatcaatttaattta 31067144  T
Q  105 gtgt---ttatggataaatttgacttctaaaaacaccttagagcacaac-tttataaataactattgttagcgtttannnnnnnngttgcagtttcatta 200  Q
    ||||   ||||||||  ||||||||||||||||| ||||||||| |||| |||| |||||| |||||||||  ||||        || ||||||||||||    
T  31067143 gtgtcaattatggat--atttgacttctaaaaactccttagagctcaacttttaaaaataattattgttagtttttattttctttgtcgcagtttcatta 31067046  T
Q  201 attatgagtaaaattaattaagtttcgtatattagtgtttaa-nnnnnnnnncttctttatatttggccccctcgtaaaaatagtgctagct 291  Q
    | |||||||||||||||||||||||| |||||||||||||||          ||||||||||||||||||||| |||||||||||| |||||    
T  31067045 aatatgagtaaaattaattaagtttcatatattagtgtttaatttttttcttcttctttatatttggcccccttgtaaaaatagtgttagct 31066954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 12 - 135
Target Start/End: Original strand, 7093531 - 7093656
Alignment:
Q  12 taccccattaaaatattatttggctactccaaacaattttgttggttaaaacagagatgatattataaaaacattgataatctattttgtttagtgt--- 108  Q
    ||||||||||| ||||||||   |||||||||||||||||||||||| ||||||||||||||| | | ||| | ||||||||||||| |||||||||       
T  7093531 taccccattaatatattattgaactactccaaacaattttgttggttcaaacagagatgatatca-agaaataatgataatctatttagtttagtgtcaa 7093629  T
Q  109 ttatggataaatttgacttctaaaaac 135  Q
    |||| |||||||||| ||||| |||||    
T  7093630 ttattgataaatttgtcttcttaaaac 7093656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 8 - 135
Target Start/End: Complemental strand, 44508376 - 44508246
Alignment:
Q  8 tagctaccccattaaaatattatttggctactccaaacaattttgttggttaaaacagagatgatattataaaaacattgataatctattttgtttagtg 107  Q
    |||||| ||||||||  |||||||  |||||| ||||||||||| |||||| ||| || |||||| |||  |||| |||||||||||||||  |||||||    
T  44508376 tagctatcccattaatgtattattcagctacttcaaacaattttattggtttaaagagggatgatgttaataaaatattgataatctatttaatttagtg 44508277  T
Q  108 t---ttatggataaatttgacttctaaaaac 135  Q
    |   |||| |||||||||||||||| |||||    
T  44508276 tcaattatagataaatttgacttcttaaaac 44508246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 165
Target Start/End: Original strand, 15962305 - 15962466
Alignment:
Q  8 tagctaccccattaaaatattatttggctactccaaacaattttgttggttaaaacagagatgatattataaaaacattgataatctattttgtttagtg 107  Q
    |||||||| |||||| ||||||||||| |||||||| |||||||||||||| |||  |||| ||||||  | ||| ||| ||||| ||||| ||||||||    
T  15962305 tagctacctcattaatatattatttggttactccaatcaattttgttggtttaaagggagaagatattgcacaaatattcataatatatttagtttagtg 15962404  T
Q  108 t---ttatggataaatttgacttctaaaaacaccttagagcacaac-tttataaataactat 165  Q
    |   ||||||||| |||| | |||| | ||| || || ||| |||| |||||||||||||||    
T  15962405 tcaattatggatacatttaagttcttacaactccataaagctcaacatttataaataactat 15962466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 252 - 291
Target Start/End: Original strand, 15962583 - 15962622
Alignment:
Q  252 cttctttatatttggccccctcgtaaaaatagtgctagct 291  Q
    |||||||||||||||||||||||||||||| |||| ||||    
T  15962583 cttctttatatttggccccctcgtaaaaattgtgcgagct 15962622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 112; Significance: 4e-56; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 8 - 300
Target Start/End: Complemental strand, 29686294 - 29685999
Alignment:
Q  8 tagctaccccattaaaatattatttggctactccaaacaattttgttggttaaaacagagatgatattataaaaacattgataatctattttgtttagtg 107  Q
    ||||||||||||||| |||||||||||  ||| |||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||  |||||||    
T  29686294 tagctaccccattaagatattatttggtcacttcaaataattttgttggttaaaacagagatgatactataaaaatattgataatctatttattttagtg 29686195  T
Q  108 t---ttatggataaatttgacttctaaaaacaccttagagcacaac-tttataaataactattgttagcgtttannnnnnnngttgcagtttcattaatt 203  Q
    |   ||||||||||| ||||||||||||||| | ||| ||  |||| ||||||| |||||||||||| | ||||        |||| |||||||| || |    
T  29686194 tcaattatggataaaattgacttctaaaaactctttaaaggtcaacttttataagtaactattgttaac-tttattttctttgttgaagtttcatcaaat 29686096  T
Q  204 atgagtaaaattaattaagtttcgtatattagtgtttaannnnnnnnncttctttatatttggccccctcgtaaaaatagtgctagctacgtcgctg 300  Q
    ||||||||||||||||||||||||||||||| |||||||         ||||||||||||||  || ||||||||||||||||||||| || |||||    
T  29686095 atgagtaaaattaattaagtttcgtatattaatgtttaattttttcttcttctttatatttgatccgctcgtaaaaatagtgctagcttcgccgctg 29685999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 7 - 172
Target Start/End: Complemental strand, 18061284 - 18061115
Alignment:
Q  7 atagctaccccattaaaatattatttggctactccaaacaattttgttggttaaaacagagatgatattataaaaacattgataatctattttgtttagt 106  Q
    |||||||||||||||| ||||||||||| ||||||||||||||| ||||||| ||| ||||||| ||||| || || ||| ||||||||||| |||||||    
T  18061284 atagctaccccattaatatattatttggttactccaaacaatttggttggttcaaagagagatgctattaaaataatattaataatctatttagtttagt 18061185  T
Q  107 gt---ttatggataaatttgacttctaaaaacaccttagagcac-aactttataaataactattgttagc 172  Q
    ||   ||||| ||||||||||||||| ||||| |  || ||| | || ||||||||||||||||||||||    
T  18061184 gtccattatgaataaatttgacttcttaaaactctatatagctcaaattttataaataactattgttagc 18061115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 15 - 170
Target Start/End: Original strand, 43559636 - 43559795
Alignment:
Q  15 cccattaaaatattatttggctactccaaacaattttgttggttaaaacagagatgatattataaaaacattgataatctattttgtttagtgt---tta 111  Q
    |||||||| ||||||||||||||||||||||||||||||||||| ||| |||||| || ||| ||||| | | |||||||| || |||||||||   |||    
T  43559636 cccattaatatattatttggctactccaaacaattttgttggtttaaagagagattattttaaaaaaatacttataatctacttagtttagtgtcaatta 43559735  T
Q  112 tggataaatttgacttctaaaaacaccttagagcacaac-tttataaataactattgtta 170  Q
    |  ||||||||||||| | |||||  | || || ||||| ||||||||||| ||||||||    
T  43559736 taaataaatttgacttgttaaaacttcataaagtacaacttttataaataattattgtta 43559795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 8 - 171
Target Start/End: Original strand, 19865874 - 19866039
Alignment:
Q  8 tagctaccccattaaaatattatttggctactccaaacaa-ttttgttggttaaaacagagatgatattataaaaacattgataatctattttgtttagt 106  Q
    ||||||||||||| | |||||||||||||||||||||||| ||||||||||| ||| |  |||||||| |  |||| || |||||||||||| |||||||    
T  19865874 tagctaccccattgatatattatttggctactccaaacaatttttgttggtttaaagaaggatgatatcaataaaatatagataatctatttagtttagt 19865973  T
Q  107 gt---ttatggataaatttgacttctaaaaacaccttagagcacaac-tttataaataactattgttag 171  Q
     |   |||| ||||||||||||||   |||||  | ||||||||||| ||||||||||| |||||||||    
T  19865974 atcaattatagataaatttgactt---aaaacttcatagagcacaacttttataaataattattgttag 19866039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 8 - 171
Target Start/End: Original strand, 19870775 - 19870940
Alignment:
Q  8 tagctaccccattaaaatattatttggctactccaaacaa-ttttgttggttaaaacagagatgatattataaaaacattgataatctattttgtttagt 106  Q
    ||||||||||||| | |||||||||||||||||||||||| ||||||||||| ||| |  |||||||| |  |||| || |||||||||||| |||||||    
T  19870775 tagctaccccattgatatattatttggctactccaaacaatttttgttggtttaaagaaggatgatatcaataaaatatagataatctatttagtttagt 19870874  T
Q  107 gt---ttatggataaatttgacttctaaaaacaccttagagcacaac-tttataaataactattgttag 171  Q
     |   |||| ||||||||||||||   |||||  | ||||||||||| ||||||||||| |||||||||    
T  19870875 atcaattatagataaatttgactt---aaaacttcatagagcacaacttttataaataattattgttag 19870940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 8 - 171
Target Start/End: Original strand, 19875676 - 19875841
Alignment:
Q  8 tagctaccccattaaaatattatttggctactccaaacaa-ttttgttggttaaaacagagatgatattataaaaacattgataatctattttgtttagt 106  Q
    ||||||||||||| | |||||||||||||||||||||||| ||||||||||| ||| |  |||||||| |  |||| || |||||||||||| |||||||    
T  19875676 tagctaccccattgatatattatttggctactccaaacaatttttgttggtttaaagaaggatgatatcaataaaatatagataatctatttagtttagt 19875775  T
Q  107 gt---ttatggataaatttgacttctaaaaacaccttagagcacaac-tttataaataactattgttag 171  Q
     |   |||| ||||||||||||||   |||||  | ||||||||||| ||||||||||| |||||||||    
T  19875776 atcaattatagataaatttgactt---aaaacttcatagagcacaacttttataaataattattgttag 19875841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 11 - 170
Target Start/End: Complemental strand, 45040229 - 45040067
Alignment:
Q  11 ctaccccattaaaatattatttggctactccaaacaattttgttggttaaaacagagatgatattataaaaacattgataatctattttgtttagtgt-- 108  Q
    |||||||||||| ||||||||| |  ||||||||||||||||||| || ||| ||| || |||||| | ||| ||||||||||||||| ||||||| |      
T  45040229 ctaccccattaatatattatttagtcactccaaacaattttgttgtttcaaagagatattatatta-acaaaaattgataatctatttagtttagtatca 45040131  T
Q  109 -ttatggataaatttgacttctaaaaacaccttagagcaca-actttataaataactattgtta 170  Q
     |||| |||||||||| ||||| ||||| || |||||| || | |||| |||||||||||||||    
T  45040130 attatagataaatttgtcttcttaaaactccatagagctcatattttacaaataactattgtta 45040067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 69
Target Start/End: Complemental strand, 33226838 - 33226775
Alignment:
Q  7 atagctaccccattaaaat-attatttggctactccaaacaattttgttggttaaaacagagat 69  Q
    |||||||||| ||||| || |||||||||||||||||||||||||| | |||| ||| ||||||    
T  33226838 atagctaccctattaatattattatttggctactccaaacaattttatcggtttaaagagagat 33226775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 252 - 291
Target Start/End: Original strand, 43559937 - 43559976
Alignment:
Q  252 cttctttatatttggccccctcgtaaaaatagtgctagct 291  Q
    |||||||||||||||| ||||||||||||| |||||||||    
T  43559937 cttctttatatttggctccctcgtaaaaattgtgctagct 43559976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 5608489 - 5608554
Alignment:
Q  7 atagctaccccattaaaatattatttggctactccaaacaattttgttggttaaaacagagatgat 72  Q
    ||||||| |||||||| ||||||||||| ||| | || |||||||||||||| |||  ||||||||    
T  5608489 atagctaacccattaatatattatttggttaccctaatcaattttgttggtttaaagggagatgat 5608554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 177
Target Start/End: Complemental strand, 21017273 - 21017204
Alignment:
Q  109 ttatggataaatttgacttctaaaaacaccttagagcacaacttt-ataaataactattgttagcgttta 177  Q
    ||||| ||||||||||||||| ||||| || || | | ||||||| ||||||||||||||||||| ||||    
T  21017273 ttatgcataaatttgacttcttaaaactccatatatctcaacttttataaataactattgttagctttta 21017204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 6e-49; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 15 - 172
Target Start/End: Complemental strand, 46091958 - 46091797
Alignment:
Q  15 cccattaaaatattatttggctactccaaacaattttgttggttaaaacagagatgatattataaaaacattgataatctattttgtttagtgt---tta 111  Q
    |||||||| |||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||| |||||||||| |||| |||||||||   |||    
T  46091958 cccattaagatattatttggctactccaaacaattttattggttaaaacatagataatattataaaaatattgataatccatttagtttagtgttaatta 46091859  T
Q  112 tggataaatttgacttctaaaaacaccttagagcacaac-tttataaataactattgttagc 172  Q
    ||||||||||||||||||||| || ||||||||| |||| ||||||||||||||||||||||    
T  46091858 tggataaatttgacttctaaatactccttagagctcaacatttataaataactattgttagc 46091797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 15 - 122
Target Start/End: Original strand, 570950 - 571062
Alignment:
Q  15 cccattaaaatattatttggctactccaaacaattttgttggttaaaacagagatgatatt--ataaaaacattgataatctattttgtttagtgt---t 109  Q
    |||||||| ||||||||||||||||||||| ||||||||||||| ||| ||||||||||||  ||||| | ||||||||| ||||| || ||||||   |    
T  570950 cccattaatatattatttggctactccaaataattttgttggtttaaagagagatgatattgcataaatatattgataatatatttagtctagtgtcaat 571049  T
Q  110 tatggataaattt 122  Q
    |||||||||||||    
T  571050 tatggataaattt 571062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 10 - 135
Target Start/End: Original strand, 39650412 - 39650540
Alignment:
Q  10 gctaccccattaaaatattatttggctactccaaacaattttgttggttaaaacagagatgatattataaaaacattgataatctattttgtttagtgt- 108  Q
    |||| |||||||| |||||| |||||||||||||||||||||||||||| ||| || ||| ||||||  |||| |||||||||||||||  ||||| ||     
T  39650412 gctatcccattaatatattacttggctactccaaacaattttgttggtttaaagagggataatattaataaaatattgataatctatttaatttagcgtc 39650511  T
Q  109 --ttatggataaatttgacttctaaaaac 135  Q
      |||| ||| |||||||||||| |||||    
T  39650512 aattatagatgaatttgacttcttaaaac 39650540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 8 - 171
Target Start/End: Complemental strand, 45483921 - 45483757
Alignment:
Q  8 tagctaccccattaaaatattatttggctactccaaacaa-ttttgttggttaaaacagagatgatattataaaaacattgataatctattttgtttagt 106  Q
    ||||||||||||| | |||||||||||||||||||||||| ||||||||||| ||| || |||||||| |  |||| || |||||||||||| |||||||    
T  45483921 tagctaccccattgatatattatttggctactccaaacaatttttgttggtttaaagagggatgatatcaataaaatatagataatctatttagtttagt 45483822  T
Q  107 gt---ttatggataaatttgacttctaaaaacaccttagagcacaac-tttataaataactattgttag 171  Q
     |   |||| |||||| |||||||   |||||  | ||||||||||| ||||||||||| |||||||||    
T  45483821 atcaattatagataaa-ttgactt---aaaacttcatagagcacaacttttataaataattattgttag 45483757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 8 - 122
Target Start/End: Original strand, 26445921 - 26446037
Alignment:
Q  8 tagctaccccattaaaatattatttggctactccaaacaattttgttggttaaaacagagatgatattataaaaacattgataatctattttgtttagtg 107  Q
    |||||||| |||||| ||||||| ||||||||||||||||||||||||||| ||| |||||| |||||  | ||| ||||||||| ||||| |||| |||    
T  26445921 tagctacctcattaatatattatctggctactccaaacaattttgttggtttaaaaagagat-atattgcacaaatattgataatatatttagtttggtg 26446019  T
Q  108 t---ttatggataaattt 122  Q
    |   ||||||||||||||    
T  26446020 tcaattatggataaattt 26446037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 43 - 134
Target Start/End: Original strand, 28521495 - 28521589
Alignment:
Q  43 aacaattttgttggttaaaacagagatgatattataaaaacattgataatctattttgtttagtgt---ttatggataaatttgacttctaaaaa 134  Q
    |||||||||||||||| ||| |||||| ||||||||| || ||||||||||||||| ||||||| |   ||||| ||||||||||||||| ||||    
T  28521495 aacaattttgttggtttaaagagagataatattataataatattgataatctatttagtttagtatcaattatgaataaatttgacttcttaaaa 28521589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 169
Target Start/End: Complemental strand, 33088013 - 33087858
Alignment:
Q  17 cattaaaatattatttggctactccaaacaattttgttggttaaaacagagatgatattataaaaacattgataatctattttgtttagtgt---ttatg 113  Q
    |||||| ||||||||||||| || |||||||||||||| ||| ||| |  | ||||||||  |||| ||||||||||||||| |||||||||   ||||     
T  33088013 cattaatatattatttggcttcttcaaacaattttgttagttcaaagaagggtgatattaataaaatattgataatctatttagtttagtgtcaattata 33087914  T
Q  114 gataaatttgacttctaaaaacaccttagagcacaac-tttataaataactattgtt 169  Q
    |||||| ||||||||| |||||  | || ||| |||| ||||||||||| |||||||    
T  33087913 gataaa-ttgacttcttaaaacttcataaagctcaacttttataaataattattgtt 33087858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 135
Target Start/End: Complemental strand, 28146938 - 28146816
Alignment:
Q  17 cattaaaatattatttggctactccaaacaattttg-ttggttaaaacagagatgatattataaaaacattgataatctattttgtttagtgt---ttat 112  Q
    |||||| ||||| ||||  ||| ||||||||||||| |||||| ||| ||||||| | ||| ||||| ||||||| |||| || |||||||||   ||||    
T  28146938 cattaatatattgtttgattacgccaaacaattttgtttggttcaaagagagatgctcttaaaaaaatattgatattctaattagtttagtgtcaattat 28146839  T
Q  113 ggataaatttgacttctaaaaac 135  Q
    |||||| |||||||||| |||||    
T  28146838 ggataactttgacttctgaaaac 28146816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 8e-36; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 19 - 170
Target Start/End: Complemental strand, 29857547 - 29857392
Alignment:
Q  19 ttaaaatattatttggctactccaaacaattttgttggttaaaacagagatgatattataaaaacattgataatctattttgtttagtgt---ttatgga 115  Q
    |||| ||||||| |||| |||||||| |||||||||||||||||||||||||||  |||||||| ||||||||||||||| |||||||||   |||||||    
T  29857547 ttaagatattatctggccactccaaataattttgttggttaaaacagagatgattctataaaaatattgataatctatttagtttagtgttaattatgga 29857448  T
Q  116 taaatttgacttctaaaaacaccttagagcacaac-tttataaataactattgtta 170  Q
    |||| ||||||||||||||| | ||| ||| |||| ||||||| ||||||||||||    
T  29857447 taaaattgacttctaaaaactctttaaagctcaacttttataagtaactattgtta 29857392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 7 - 134
Target Start/End: Original strand, 55250446 - 55250576
Alignment:
Q  7 atagctaccccattaaaatattatttggctactccaaacaattttgttggttaaaacagagatgatattataaaaacattgataatctattttgtttagt 106  Q
    |||||||||||||||| |||||||||| ||||| |||||||||||||||||| ||| || ||| || |||  |||| ||||||||||||||| |||||||    
T  55250446 atagctaccccattaatatattatttgactacttcaaacaattttgttggttcaaagagggataatgttaataaaatattgataatctatttagtttagt 55250545  T
Q  107 gt---ttatggataaatttgacttctaaaaa 134  Q
    ||   |||| |||||||||||||||| ||||    
T  55250546 gtcaattatagataaatttgacttcttaaaa 55250576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 7 - 177
Target Start/End: Complemental strand, 1101242 - 1101069
Alignment:
Q  7 atagctaccccattaaaatattatttggctactccaaacaattttgttggttaaaacagagatgatattataaaaacattgataatctattttgtttagt 106  Q
    |||||| ||||||||| ||||||||||||||||||||||||||| ||||||| ||| ||| || |||||| | ||| ||||||||||||||| |||||||    
T  1101242 atagctcccccattaatatattatttggctactccaaacaatttagttggttcaaagagatattatatta-acaaaaattgataatctatttagtttagt 1101144  T
Q  107 gt---ttatggataaatttgacttctaaaaacaccttagagcacaac-tttataaataactattgttagcgttta 177  Q
    ||    ||| |||||||||| ||||| ||||| |  |||||| || | |||| |||||||||||| |||| ||||    
T  1101143 gtcaactatagataaatttgtcttcttaaaactcaatagagctcatcttttacaaataactattggtagctttta 1101069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 9 - 146
Target Start/End: Original strand, 1838565 - 1838705
Alignment:
Q  9 agctaccccattaaaatattatttggctactccaaacaattttgttggttaaaacagagatgatattataaaaacattgataatctattttgtttagtgt 108  Q
    |||||| ||||||| |||||||||| |||||||||||||||||||||| | ||  |||||||||| || | ||| ||||||||| |||||  |||| |||    
T  1838565 agctactccattaatatattatttgactactccaaacaattttgttggatcaatgagagatgataatacataaatattgataatatatttactttaatgt 1838664  T
Q  109 t---tatggataaatttgacttctaaaaacaccttagagca 146  Q
    |   ||||||||||||| |||||| ||| | || |||||||    
T  1838665 taactatggataaattttacttcttaaacctccatagagca 1838705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 10 - 135
Target Start/End: Complemental strand, 47669061 - 47668933
Alignment:
Q  10 gctaccccattaaaatattatttggctactccaaacaattttgttggttaaaacagagatgatattataaaaacattgataatctattttgtttagtgt- 108  Q
    ||||||||||||| |||||||||| ||||||| |||||||||||||||| ||| |  ||| || |||  |||| |||||||||||||||  ||||||||     
T  47669061 gctaccccattaatatattatttgactactccgaacaattttgttggtttaaagatggataatgttaataaaatattgataatctatttaatttagtgtc 47668962  T
Q  109 --ttatggataaatttgacttctaaaaac 135  Q
      |||| ||||||||||| |||| |||||    
T  47668961 aattatagataaatttgatttcttaaaac 47668933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 252 - 300
Target Start/End: Complemental strand, 29857322 - 29857274
Alignment:
Q  252 cttctttatatttggccccctcgtaaaaatagtgctagctacgtcgctg 300  Q
    ||||||||||||| ||||| |||||||||||||||||||| || |||||    
T  29857322 cttctttatatttagccccttcgtaaaaatagtgctagcttcgccgctg 29857274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 252 - 290
Target Start/End: Complemental strand, 47668786 - 47668748
Alignment:
Q  252 cttctttatatttggccccctcgtaaaaatagtgctagc 290  Q
    ||||||||||||| |||||||||||||||| ||||||||    
T  47668786 cttctttatattttgccccctcgtaaaaattgtgctagc 47668748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 46963768 - 46963816
Alignment:
Q  9 agctaccccattaaaatattatttggctactccaaacaattttgttggtt 58  Q
    ||||| |||||||| |||| ||||||||||||||||||||||| ||||||    
T  46963768 agctatcccattaatatat-atttggctactccaaacaattttattggtt 46963816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 56; Significance: 1e-22; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 7 - 145
Target Start/End: Complemental strand, 12807 - 12667
Alignment:
Q  7 atagctaccccattaaaatattatttggctactccaaacaattttgttggttaaaacagagatgatattataaaaacattgataatctattttgtttagt 106  Q
    ||||||||||||| || ||||||||| ||||||||||||||||||||||||| ||| ||| || |||||| | ||| ||||||| ||||||| |||||||    
T  12807 atagctaccccatgaatatattattttgctactccaaacaattttgttggttcaaagagatattatatta-ataaaaattgatattctatttagtttagt 12709  T
Q  107 gt---ttatggataaatttgacttctaaaaacaccttagagc 145  Q
    ||    |||||||||||||| ||||| ||||| || ||||||    
T  12708 gtcaagtatggataaatttgtcttcttaaaactccatagagc 12667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 7e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 8 - 135
Target Start/End: Original strand, 4017048 - 4017178
Alignment:
Q  8 tagctaccccattaaaatattatttggctactccaaacaattttgttggttaaaacagagatgatattataaaaacattgataatctattttgtttagtg 107  Q
    ||||||||||||| |||||||||||  | ||| |||||||||||||| ||| ||  ||||||||||||| ||| |||||  |||||||||| ||||||||    
T  4017048 tagctaccccattcaaatattatttaacaacttcaaacaattttgttagttcaaggagagatgatattaaaaatacatttgtaatctatttagtttagtg 4017147  T
Q  108 t---ttatggataaatttgacttctaaaaac 135  Q
    |   ||||| ||||||||||||||| |||||    
T  4017148 ttaattatgaataaatttgacttctgaaaac 4017178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 18237 - 18141
Alignment:
Q  8 tagctaccccattaaaatattatttggctactccaaacaattttgttggttaaaacagagatgatattataaaaacattgataatctattttgttta 104  Q
    |||||||| |||||| |||||||||| |||||||||| ||||||||||||| |||   ||||||||||| | ||| ||| ||||| ||||| |||||    
T  18237 tagctacctcattaatatattatttgtctactccaaataattttgttggtttaaaggaagatgatattacacaaatattaataatatatttagttta 18141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 134
Target Start/End: Complemental strand, 16586 - 16484
Alignment:
Q  36 tactccaaacaattttgttggttaaaacagagatgatatt-ataaaaacattgataatctattttgtttagtgt---ttatggataaatttgacttctaa 131  Q
    ||||||||||||||||||||||| ||| || ||||||||| | ||||| ||||||||| ||||| ||||||| |   || ||||||||| |||||||| |    
T  16586 tactccaaacaattttgttggtttaaagagggatgatattaaaaaaaatattgataatttatttagtttagtatcaattgtggataaatctgacttctta 16487  T
Q  132 aaa 134  Q
    |||    
T  16486 aaa 16484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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