View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5570-Insertion-10 (Length: 374)
Name: NF5570-Insertion-10
Description: NF5570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5570-Insertion-10 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 187 - 374
Target Start/End: Complemental strand, 5571074 - 5570887
Alignment:
| Q |
187 |
tttcatgtttcatcacaaatattttggacaaaaatcaaaatgtcacaatttatgtcttgatcaaatttcgttaccttattatttgtagtctctttttcat |
286 |
Q |
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| T |
5571074 |
tttcatgtttcatcacaaatattttggacaaaaatcaaaatgtcacaatttatgtcttgatcaaatttcgttaccttattatttgtagtctctttttcat |
5570975 |
T |
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| Q |
287 |
cttctgaatgatcccttggttcatgagcaatatattcaatgcgaaattcaaattcataagattgttatataatcctgtttccacatta |
374 |
Q |
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| T |
5570974 |
cttctgaatgatcccttggttcatgagcaatatattcaatgcgaaattcaaattcataagattgttatataatcctgtttccacatta |
5570887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 187 - 374
Target Start/End: Original strand, 33172081 - 33172270
Alignment:
| Q |
187 |
tttcatgtttcatcacaaatattttggacaaaaatcaaaatgtcacaatttatgtcttgatcaaatttcgttaccttattatttgtagtctctttttcat |
286 |
Q |
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| T |
33172081 |
tttcatgttttatcacaaagattttggacaaaaatcaaaatgtcacaatttatgccttgatcaaatatcattaccttattatttgtaatctcttgttcag |
33172180 |
T |
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| Q |
287 |
cttctgaatgatcccttggttcatgagcaatatattc--aatgcgaaattcaaattcataagattgttatataatcctgtttccacatta |
374 |
Q |
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| T |
33172181 |
cttctgaatgctcccttggttcatgtggaatatattcagactgcaaaattcaaattcataagattgttatataatctagtttccacatta |
33172270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 7 - 119
Target Start/End: Complemental strand, 5571254 - 5571142
Alignment:
| Q |
7 |
aagcattttatttaatcttcgtttcatcaaagctgttatgggagctacacgaattgcaggtaggatgatttaagacacaaagaaaataagctacaagagc |
106 |
Q |
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| T |
5571254 |
aagcattttatttaatcttcgtttcatcaaagctgttatgggagctacacgaattgcaggtaggatgatttaagacacaaagaaaataagctacaagagc |
5571155 |
T |
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| Q |
107 |
aaacattgctttg |
119 |
Q |
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| T |
5571154 |
aaacattgctttg |
5571142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 50345106 - 50345074
Alignment:
| Q |
11 |
attttatttaatcttcgtttcatcaaagctgtt |
43 |
Q |
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| T |
50345106 |
attttatttaatcttcgttttatcaaagctgtt |
50345074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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