View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5570-Insertion-3 (Length: 612)
Name: NF5570-Insertion-3
Description: NF5570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5570-Insertion-3 |
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Alignment Details
Target: chr2 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 8 - 383
Target Start/End: Complemental strand, 26804478 - 26804105
Alignment:
| Q |
8 |
gaaaaaatcaaagagttttaaagaagggtcttttggtattgaagctgcttcattgagttattcttcttctttgatcactgattcaccaggaagcatagct |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26804478 |
gaaaaaatcaaagagttttaaagaagggtcttttggtattgaagctgcttcattgagttattcttcttctttgatcactgattcaccaggaagcatagct |
26804379 |
T |
|
| Q |
108 |
gctgttagaagggaacgagtggcacttcagcaagcacaaaggaaaatgaagattgctcattatggaagatcaaaatctgctaaatttgaaagagtttttc |
207 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26804378 |
gctgttagaagggaacaagtggcacttcagcaagcacaaaggaaaatgaagattgctcattatggaagatcaaaatctgctaaatttgaaagagtttttc |
26804279 |
T |
|
| Q |
208 |
ctattgatccttcaagtgctcttgattcaaagactactaatcaagaggagaagagatgcagcttcatcacaaccaattcaggtaattggtagttataaat |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26804278 |
ctattgatccttcaagtgctcttgattcaaagactactaatcaagaggagaagagatgcagcttcatcacaaccaattcaggtaattggtagttataaat |
26804179 |
T |
|
| Q |
308 |
attttaaaagatttataattctaaaagaaaattattagaaagtcaatcaattataattgtctgaatattaaaaatg |
383 |
Q |
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| T |
26804178 |
attttaaaagatt--taattctaaaagaaaattattagaaagtcaatcaattataattgtctgaatattaaaaatg |
26804105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 382 - 612
Target Start/End: Complemental strand, 26804048 - 26803818
Alignment:
| Q |
382 |
tgatagtttaatttattataggtctataaaaactaaactcatattttaatacaaattcatatgtaccctttttgatacttagtgcaattttgttttatct |
481 |
Q |
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| T |
26804048 |
tgatagtttaatttattataggtttataaaaactaaactcatattttaatacaaattcataggtaccctttttgatatttagtgcaattttgttttatct |
26803949 |
T |
|
| Q |
482 |
taaagcaacaagtgttaactttaatgtctcttttgataaacagatcctatctatattgcttatcatgatgaagaatggggagttccagttcatgatgaca |
581 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26803948 |
taaagcaacaagtgttaactttaatgtctcttttgataaacagatcctatctatattgcttatcatgatgaagaatggggagttccagttcatgatgaca |
26803849 |
T |
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| Q |
582 |
agtaagtccctacccctctctctctcacaca |
612 |
Q |
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| T |
26803848 |
agtaagtccctacccctctctctctcacaca |
26803818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 506 - 588
Target Start/End: Complemental strand, 18417082 - 18416999
Alignment:
| Q |
506 |
tgtctcttttgat-aaacagatcctatctatattgcttatcatgatgaagaatggggagttccagttcatgatgacaagtaagt |
588 |
Q |
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|||||||||| || ||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
18417082 |
tgtctctttttattaaatagatcccatctatattgcttatcatgatgaggaatggggagttccagttcatgatgacaagtaagt |
18416999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 57 - 204
Target Start/End: Complemental strand, 18418005 - 18417858
Alignment:
| Q |
57 |
tcattgagttattcttcttctttgatcactgattcaccaggaagcatagctgctgttagaagggaacgagtggcacttcagcaagcacaaaggaaaatga |
156 |
Q |
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||||||||||| ||||| ||||||||||||||||||||| || || |||| | || || |||| ||||| | ||| | || || |||||||||| |
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| T |
18418005 |
tcattgagttactcttcaaatttgatcactgattcaccagggagtattgctggcttgaggagagaacagatggcattgcagaatgctcagaggaaaatga |
18417906 |
T |
|
| Q |
157 |
agattgctcattatggaagatcaaaatctgctaaatttgaaagagttt |
204 |
Q |
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||||||||||||||||||||||||| ||||| ||||||||||| |||| |
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| T |
18417905 |
agattgctcattatggaagatcaaagtctgcaaaatttgaaagtgttt |
18417858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 15 - 119
Target Start/End: Complemental strand, 32590993 - 32590891
Alignment:
| Q |
15 |
tcaaagagttttaaagaagggtcttttggtattgaagctgcttcattgagttattcttcttctttgatcactgattcacca-ggaagcatagctgctgtt |
113 |
Q |
| |
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||||||| ||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| | | |||| |||| ||||| || |
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| T |
32590993 |
tcaaagaattttaaagatgggtattttggtattgaagct---tcattgagttattcttcttctttgatcactgattctcgagggaaacatatctgctatt |
32590897 |
T |
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| Q |
114 |
agaagg |
119 |
Q |
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|||||| |
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| T |
32590896 |
agaagg |
32590891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 545 - 585
Target Start/End: Complemental strand, 54546851 - 54546811
Alignment:
| Q |
545 |
catgatgaagaatggggagttccagttcatgatgacaagta |
585 |
Q |
| |
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|||||||||||||||||||||||||| ||||| |||||||| |
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| T |
54546851 |
catgatgaagaatggggagttccagtacatgacgacaagta |
54546811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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