View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5570-Insertion-4 (Length: 570)
Name: NF5570-Insertion-4
Description: NF5570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5570-Insertion-4 |
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| [»] chr6 (7 HSPs) |
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| [»] scaffold0144 (2 HSPs) |
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| [»] scaffold0133 (1 HSPs) |
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| [»] scaffold0256 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 376; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 114 - 570
Target Start/End: Complemental strand, 16843413 - 16842957
Alignment:
| Q |
114 |
tcattttttcaagaagtcgaaacgcttaacgaaggttaagttacattcaaaatgcatgatatattccatgatgttgcaagctccattttgggagaacaat |
213 |
Q |
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||||||||||||||||||||||| | | | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16843413 |
tcattttttcaagaagtcgaaacacatgaagaaggtaaagttacattcaaaatgcatgatatattccatgatgttgcaagctccattttgggagaacaat |
16843314 |
T |
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| Q |
214 |
gtgtaacttcaaaggctgctaccttaactaatttgtcaaaaagagttcatcatattagttgtttcaatattgacaaacaattcaaattccgcttgattcc |
313 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||| |
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| T |
16843313 |
gtgtaacttcaaaggctgataccttaactaatttgtcaaaaagagttcatcatattagttttttcaatattgacgaacaattcaaattcagcttgattcc |
16843214 |
T |
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| Q |
314 |
cttcaaaaaagtggaatccttacgaacttttcttgannnnnnnccacctaaatcaaatttgggcgtgtttccatcaatcactcctctccgagcattgcgt |
413 |
Q |
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| T |
16843213 |
cttcaaaaaagtggaatccttgcgaacttttcttgatttttttccacctgaatcaaatttgggcgtgtttccatcaatcactcctctccgagcattacgt |
16843114 |
T |
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| Q |
414 |
ataagttcttctcaactctcagccttgaagaatttaatccatttgaggtacttggaactttatgaaagtgatactgaaactcttcctgagtctatttaca |
513 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
16843113 |
acaagttcttctcaactctcagccttgaagaatttaatccatttgaggtacttggaactttatgaaagtgatactgaaactcttcctgagtctatttgca |
16843014 |
T |
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| Q |
514 |
gcctaagaaatttacaaacactaaaacttgaatgttgttacaacctttatagtcttc |
570 |
Q |
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| T |
16843013 |
gcctaagaaaattacaaacactaaaacttgaatgttgttacaacctttatagtcttc |
16842957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 8 - 99
Target Start/End: Complemental strand, 16844996 - 16844905
Alignment:
| Q |
8 |
tagttaaagtatattatgtgaatgatataaataatcaaagtggatcactcactgtggaacagatggattattatatacaaataattactatc |
99 |
Q |
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| T |
16844996 |
tagttaaagtatattatgtgaatgatataaataatcaaagtggatcactcactgtggaacagatggattattatatacaaataattactatc |
16844905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 380 - 486
Target Start/End: Complemental strand, 16657356 - 16657250
Alignment:
| Q |
380 |
gtttccatcaatcactcctctccgagcattgcgtataagttcttctcaactctcagccttgaagaatttaatccatttgaggtacttggaactttatgaa |
479 |
Q |
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||||| ||||| ||||||||||||||| || |||||||||||| ||||||||| | |||||||||||||| |||||||||||||||| ||||| | | |
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| T |
16657356 |
gtttctatcaagcactcctctccgagctttatgtataagttcttatcaactctcgtcattgaagaatttaatacatttgaggtacttggttctttacgga |
16657257 |
T |
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| Q |
480 |
agtgata |
486 |
Q |
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||||||| |
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| T |
16657256 |
agtgata |
16657250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 378 - 475
Target Start/End: Complemental strand, 16780521 - 16780424
Alignment:
| Q |
378 |
gtgtttccatcaatcactcctctccgagcattgcgtataagttcttctcaactctcagccttgaagaatttaatccatttgaggtacttggaacttta |
475 |
Q |
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||||||||||| |||||||||||||||| || |||| ||| |||| ||| ||||| || |||||||||||||| |||||| |||||||||||||||| |
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| T |
16780521 |
gtgtttccatctgtcactcctctccgagctttacgtacaaggtcttgtcatctctctgcattgaagaatttaatgcatttgcggtacttggaacttta |
16780424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 378 - 473
Target Start/End: Complemental strand, 16796509 - 16796414
Alignment:
| Q |
378 |
gtgtttccatcaatcactcctctccgagcattgcgtataagttcttctcaactctcagccttgaagaatttaatccatttgaggtacttggaactt |
473 |
Q |
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||||| ||||||||| |||||||||||| || |||| |||||||| |||| |||| | |||||||||||||| ||| ||||||||||||||||| |
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| T |
16796509 |
gtgttgccatcaatcgttcctctccgagctttacgtacaagttcttgtcaattctcttcattgaagaatttaatacatgtgaggtacttggaactt |
16796414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 397 - 475
Target Start/End: Complemental strand, 17068830 - 17068752
Alignment:
| Q |
397 |
ctctccgagcattgcgtataagttcttctcaactctcagccttgaagaatttaatccatttgaggtacttggaacttta |
475 |
Q |
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| T |
17068830 |
ctctccgagctttacgttcaggttcttatcaactctcgtcattgaagaatttaatacatttgaggtacttggaacttta |
17068752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 474
Target Start/End: Complemental strand, 16986785 - 16986704
Alignment:
| Q |
393 |
actcctctccgagcattgcgtataagttcttctcaactctcagccttgaagaatttaatccatttgaggtacttggaacttt |
474 |
Q |
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|||||||| ||||| || | || ||||||| |||||| ||| | ||||||| |||||| ||||||||||||||| |||||| |
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| T |
16986785 |
actcctcttcgagctttacatacaagttctcatcaactatcatcattgaagagtttaatgcatttgaggtacttgaaacttt |
16986704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 379 - 482
Target Start/End: Complemental strand, 13377434 - 13377331
Alignment:
| Q |
379 |
tgtttccatcaatcactcctctccgagcattgcgtataagttcttctcaactctcagccttgaagaatttaatccatttgaggtacttggaactttatga |
478 |
Q |
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|||||||||||||||||||||||||||| || |||| |||||||| ||||||||||| ||||||||| |||| ||| |||||||||||||||||||||| |
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| T |
13377434 |
tgtttccatcaatcactcctctccgagctttacgtacaagttcttttcaactctcaggattgaagaatataattcatctgaggtacttggaactttatga |
13377335 |
T |
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| Q |
479 |
aagt |
482 |
Q |
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|||| |
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| T |
13377334 |
aagt |
13377331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 386 - 486
Target Start/End: Complemental strand, 20153779 - 20153679
Alignment:
| Q |
386 |
atcaatcactcctctccgagcattgcgtataagttcttctcaactctcagccttgaagaatttaatccatttgaggtacttggaactttatgaaagtgat |
485 |
Q |
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||||| ||||||||||||||| || |||| |||| ||| |||||||||| | |||||| |||||| |||||||||||||||||||||||||| |||||| |
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| T |
20153779 |
atcaagcactcctctccgagctttacgtacaagtccttttcaactctcaacaatgaagactttaatacatttgaggtacttggaactttatgacagtgat |
20153680 |
T |
|
| Q |
486 |
a |
486 |
Q |
| |
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| T |
20153679 |
a |
20153679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0144
Description:
Target: scaffold0144; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 386 - 475
Target Start/End: Complemental strand, 36828 - 36739
Alignment:
| Q |
386 |
atcaatcactcctctccgagcattgcgtataagttcttctcaactctcagccttgaagaatttaatccatttgaggtacttggaacttta |
475 |
Q |
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||||| ||||||||||||||| || |||| ||||||| ||||||||| | |||||||||||||| ||||||||||||||||||||||| |
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| T |
36828 |
atcaagcactcctctccgagctttacgtaccagttcttatcaactctcgtcattgaagaatttaatacatttgaggtacttggaacttta |
36739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 386 - 486
Target Start/End: Complemental strand, 35402 - 35302
Alignment:
| Q |
386 |
atcaatcactcctctccgagcattgcgtataagttcttctcaactctcagccttgaagaatttaatccatttgaggtacttggaactttatgaaagtgat |
485 |
Q |
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||||| ||||||||||||||| || ||| |||||||| ||||||||| | |||||||||||||| ||||||||||||||||| ||||| | ||||||| |
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| T |
35402 |
atcaagcactcctctccgagctttatgtacaagttcttatcaactctcgtcattgaagaatttaatacatttgaggtacttggatctttacgtaagtgat |
35303 |
T |
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| Q |
486 |
a |
486 |
Q |
| |
|
| |
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|
| T |
35302 |
a |
35302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 390 - 474
Target Start/End: Original strand, 38940183 - 38940267
Alignment:
| Q |
390 |
atcactcctctccgagcattgcgtataagttcttctcaactctcagccttgaagaatttaatccatttgaggtacttggaacttt |
474 |
Q |
| |
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||||||||||||||||| || |||| ||| |||| ||| ||||| || |||||||||||||| |||||| ||||||||||||||| |
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| T |
38940183 |
atcactcctctccgagctttacgtacaaggtcttgtcatctctctgcattgaagaatttaatgcatttgcggtacttggaacttt |
38940267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 398 - 474
Target Start/End: Original strand, 7054104 - 7054180
Alignment:
| Q |
398 |
tctccgagcattgcgtataagttcttctcaactctcagccttgaagaatttaatccatttgaggtacttggaacttt |
474 |
Q |
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||||||||| || |||| |||||||| | ||| ||||| |||| ||||||||| |||||||||||| | ||||||| |
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| T |
7054104 |
tctccgagctttacgtacaagttcttttggactgtcagctttgaggaatttaatgcatttgaggtacctagaacttt |
7054180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 378 - 475
Target Start/End: Complemental strand, 17398 - 17301
Alignment:
| Q |
378 |
gtgtttccatcaatcactcctctccgagcattgcgtataagttcttctcaactctcagccttgaagaatttaatccatttgaggtacttggaacttta |
475 |
Q |
| |
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||||| ||||| ||||||| |||||||| || |||||||||| || ||| ||||| || || ||||||||||| |||||| |||||||||||||||| |
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| T |
17398 |
gtgttgccatctgtcactccactccgagctttacgtataagtttttgtcatctctctgcattaaagaatttaatgcatttgcggtacttggaacttta |
17301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 390 - 475
Target Start/End: Complemental strand, 8491 - 8406
Alignment:
| Q |
390 |
atcactcctctccgagcattgcgtataagttcttctcaactctcagccttgaagaatttaatccatttgaggtacttggaacttta |
475 |
Q |
| |
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|||||||||||||||| || |||| ||| |||| || ||||| || ||||||| |||||| |||||| |||||||||||||||| |
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| T |
8491 |
atcactcctctccgagttttacgtacaaggtcttgccatctctctgcattgaagagtttaatgcatttgcggtacttggaacttta |
8406 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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