View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5570-Insertion-6 (Length: 451)
Name: NF5570-Insertion-6
Description: NF5570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5570-Insertion-6 |
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Alignment Details
Target: chr5 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 7 - 230
Target Start/End: Original strand, 33502831 - 33503058
Alignment:
| Q |
7 |
attttcttcactgcaatatacttctgcccaatacaaaggagatcctactttcattgatccaactgctgtagaaattagttggggggaggttgaagattct |
106 |
Q |
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| T |
33502831 |
attttcttcactgcaatatacttctgcccaatacaaaggagatcctactttcatagatccaactgctgtagaaattagttggggggaggttgaagattct |
33502930 |
T |
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| Q |
107 |
tcacctataactc----tattcttttttatggagaagagaaatttgatgaatcggcatttttacctgactccactttactcttagaacatccaattgctg |
202 |
Q |
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| T |
33502931 |
tcaactataactctttttattctttttaacggacaggaagaatttgatgaatcagtattttcacccgaccccactttactcttggaacatccaactgctg |
33503030 |
T |
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| Q |
203 |
taacagaaagagccatttccaactgcat |
230 |
Q |
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| T |
33503031 |
taacagaaagagccatttccatctgcat |
33503058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 230 - 445
Target Start/End: Original strand, 33503598 - 33503816
Alignment:
| Q |
230 |
tttcactatgaagatcaaaacttaattactttattactatt-ttatccttcctttttcatactcatttcattacatgcaacatcactgttagagtataat |
328 |
Q |
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| T |
33503598 |
tttcacaatgaagatcacaacttattcgctttattactagtattattcatcctttgtcatactcatttcattacatgcaacgtcactgttagagtataat |
33503697 |
T |
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| Q |
329 |
caatcccatcccaaataatgaaaaatgggatcctgcaggcggttaaaaattaaaagaaatgaaaagataaccttctgtgctcttatcgaatacctgac-- |
426 |
Q |
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| T |
33503698 |
caccaccatccaaaatgacaaaaagtaagatcctgcaggtggtaaaaaattaaaagaaatgaaaggataaccatctgtgctcttatcgaatacctggctg |
33503797 |
T |
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| Q |
427 |
taagatttaaagctctaaa |
445 |
Q |
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||||||||||||||||||| |
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| T |
33503798 |
taagatttaaagctctaaa |
33503816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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