View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5570-Insertion-7 (Length: 444)
Name: NF5570-Insertion-7
Description: NF5570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5570-Insertion-7 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 8 - 444
Target Start/End: Complemental strand, 40444700 - 40444265
Alignment:
| Q |
8 |
aaaatatgctgcagaaattcgtgatccgacaaggaaaggaagcagggtttggttaggaacatttgacagagagattgatgctgctaaggcttatgattgt |
107 |
Q |
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| T |
40444700 |
aaaatatgctgcagaaattcgtgatccgacaaggaaaggaagcagggtttggttaggaacatttgacagagagattgatgctgctaaggcttatgattgt |
40444601 |
T |
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| Q |
108 |
gcagctttcagaatgaggggtcagaaagccatattgaattttcctttggaagctggtgaagctaatccaaagcctaataattgtggcaggaaaaggagaa |
207 |
Q |
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| T |
40444600 |
gcagctttcagaatgaggggtcagaaagccatattgaattttcctttggaagctggtgaagctaatccaaagcctaataattgtggcaggaaaaggagaa |
40444501 |
T |
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| Q |
208 |
tacatcaaagatatgatgctacaagttaaagttaagacatgattagtattgccgctattttgtaccatattagatttttatattggatctagttcgtctt |
307 |
Q |
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| T |
40444500 |
tacatcaaagatatgatgctacaagttaaagttaagacatgattagtattgccgctattttataccatattagatttttatattggatctagttcgtctt |
40444401 |
T |
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| Q |
308 |
tcataaa-gagtggtcttgaaaaataaaaataaagtgttggtccgtgtgtacctatcaatgcattttaattttaagataaaaataaacattaaaatttca |
406 |
Q |
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| T |
40444400 |
tcataaaggaatggtctataaaaataaaaataaagtaatggtccgtgtgtacctatcaatgtattttaattttaagataaaaataaacattaaaatttca |
40444301 |
T |
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| Q |
407 |
catgatatctatgactctcatgaatcaactggttttat |
444 |
Q |
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| T |
40444300 |
catgatatcaatga--ctcatgaatcaactggttttat |
40444265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 37 - 207
Target Start/End: Original strand, 18652952 - 18653122
Alignment:
| Q |
37 |
caaggaaaggaagcagggtttggttaggaacatttgacagagagattgatgctgctaaggcttatgattgtgcagctttcagaatgaggggtcagaaagc |
136 |
Q |
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||||||||||||| |||||||||||||| ||||||||| | || ||||||||||| || |||||||||| ||| |||||||||||||||||||||||||| |
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| T |
18652952 |
caaggaaaggaagtagggtttggttaggtacatttgactgtgaaattgatgctgcaaaagcttatgattctgctgctttcagaatgaggggtcagaaagc |
18653051 |
T |
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| Q |
137 |
catattgaattttcctttggaagctggtgaagctaatccaaagcctaataattgtggcaggaaaaggagaa |
207 |
Q |
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| T |
18653052 |
tatattgaattttcctttggaagctggtgtttgtgatcctaagccaaatagttgtggtaggaaaaggagaa |
18653122 |
T |
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