View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5570-Insertion-8 (Length: 426)

Name: NF5570-Insertion-8
Description: NF5570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5570-Insertion-8
NF5570-Insertion-8
[»] scaffold0075 (3 HSPs)
scaffold0075 (8-426)||(10646-11066)
scaffold0075 (8-426)||(6030-6450)
scaffold0075 (230-426)||(5237-5433)


Alignment Details
Target: scaffold0075 (Bit Score: 358; Significance: 0; HSPs: 3)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 8 - 426
Target Start/End: Original strand, 10646 - 11066
Alignment:
Q  8 agatacacatggaagcattttacaaatgatagtggatctttttgcaaattttacaacacatatccactattgagattctcaccacacaaacac--actac 105  Q
    |||| ||||| ||||||||||||||| |||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||  |||||    
T  10646 agatgcacattgaagcattttacaaaggatagtggatctttttgcaaattttagagcacacatccactattgagattctcaccacacaaacacacactac 10745  T
Q  106 actctcctctttcactcaaagatacgttctttccttcatctctaactcatcctcactaatattacacactccaactttactttaacccatacaaatcctt 205  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  10746 actctcctcattcactcaaagatacgttctttccttcatctctaactcatcctcattaatattacacactccaactttactttaacccatacaaatcctt 10845  T
Q  206 cattataaatgttatctttcactcacttagttactttacttcatcattcttaacctcttctcaaatgacgacatctaaaacccttctcatgttcagtgga 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  10846 cattataaatgttatctttcactcacttagttactttacttcatcatttttaacctcttctcaaatgacgacatctaaaacccttctcatgttcattgga 10945  T
Q  306 gtattttttgtggagaagctgctcatcctgagagtgggagtgaattcaactctagaagacaaaatcaaaagcttgcctcagcaaccgaaagttgggttcc 405  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10946 gtattttttgtggagaagctgctcatcctgggagtgggagtgaattcaactctagaagacaaaatcaaaagcttgcctcagcaaccgaaagttgggttcc 11045  T
Q  406 aacaattttcgagtcatgtca 426  Q
    |||| |||||| |||||||||    
T  11046 aacagttttcgggtcatgtca 11066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075; HSP #2
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 8 - 426
Target Start/End: Original strand, 6030 - 6450
Alignment:
Q  8 agatacacatggaagcattttacaaatgatagtggatctttttgcaaattttacaacacatatccactattgagattctcaccacacaaacac--actac 105  Q
    |||||||||||||||||||||||||| |||||||||||||||  ||||||||||| |||| ||||||||||||||||||||||||||||||||  |||||    
T  6030 agatacacatggaagcattttacaaaggatagtggatcttttatcaaattttacagcacacatccactattgagattctcaccacacaaacacacactac 6129  T
Q  106 actctcctctttcactcaaagatacgttctttccttcatctctaactcatcctcactaatattacacactccaactttactttaacccatacaaatcctt 205  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||    
T  6130 actctcctctttcactcaaagatacgttctttccttcatctcaaactcatcctcgctaatattacacactccaactttacgttaacgcatacaaatcctt 6229  T
Q  206 cattataaatgttatctttcactcacttagttactttacttcatcattcttaacctcttctcaaatgacgacatctaaaacccttctcatgttcagtgga 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  6230 cattataaatgttatctttcactcacttagttactttacttcatcatttttaacctcttctcaaatgacgaaatctaaaacccttctcatgttcattgga 6329  T
Q  306 gtattttttgtggagaagctgctcatcctgagagtgggagtgaattcaactctagaagacaaaatcaaaagcttgcctcagcaaccgaaagttgggttcc 405  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  6330 gtattttttgtggagaagccgctcatcctgggagtgggagtgaattcaactctagaagacaaaattaaaagcttgcctcagcaaccgaaagttgggttcc 6429  T
Q  406 aacaattttcgagtcatgtca 426  Q
    |||| |||||| |||||||||    
T  6430 aacagttttcgggtcatgtca 6450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075; HSP #3
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 230 - 426
Target Start/End: Original strand, 5237 - 5433
Alignment:
Q  230 acttagttactttacttcatcattcttaacctcttctcaaatgacgacatctaaaacccttctcatgttcagtggagtattttttgtggagaagctgctc 329  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||   |||||||| ||||||||||||||||||||||||||||    
T  5237 acttagttactttacttcatcatttttaacctcttctcaaatgacgacatctaaaacactatgcatgttcattggagtattttttgtggagaagctgctc 5336  T
Q  330 atcctgagagtgggagtgaattcaactctagaagacaaaatcaaaagcttgcctcagcaaccgaaagttgggttccaacaattttcgagtcatgtca 426  Q
    ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||    
T  5337 atcttgggagtgggagtgaattcaactctagaagacaaaatcaaaagcttgcctcagcaaccgaaagttgggttccaacagttttcggttcatgtca 5433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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