View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5570-Insertion-9 (Length: 375)

Name: NF5570-Insertion-9
Description: NF5570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5570-Insertion-9
NF5570-Insertion-9
[»] chr4 (22 HSPs)
chr4 (8-372)||(6927416-6927793)
chr4 (205-255)||(25885826-25885876)
chr4 (89-144)||(24193466-24193521)
chr4 (201-256)||(27043882-27043937)
chr4 (201-255)||(24160953-24161007)
chr4 (205-251)||(42321936-42321982)
chr4 (206-256)||(49219107-49219157)
chr4 (205-254)||(47119019-47119068)
chr4 (205-249)||(13949903-13949947)
chr4 (205-256)||(26883962-26884013)
chr4 (205-255)||(437485-437535)
chr4 (205-255)||(3175918-3175968)
chr4 (205-255)||(29263337-29263387)
chr4 (205-255)||(51630078-51630128)
chr4 (205-255)||(52746893-52746943)
chr4 (201-254)||(21157731-21157784)
chr4 (336-372)||(32071968-32072005)
chr4 (206-255)||(40174531-40174580)
chr4 (91-144)||(41162187-41162240)
chr4 (205-254)||(47946165-47946214)
chr4 (207-280)||(50004172-50004245)
chr4 (199-255)||(11389487-11389543)
[»] scaffold0590 (1 HSPs)
scaffold0590 (100-185)||(1166-1252)
[»] scaffold0275 (1 HSPs)
scaffold0275 (100-185)||(2723-2809)
[»] scaffold0024 (1 HSPs)
scaffold0024 (205-256)||(27543-27594)
[»] chr6 (19 HSPs)
chr6 (200-256)||(2112163-2112218)
chr6 (205-256)||(28660812-28660863)
chr6 (205-255)||(4006681-4006731)
chr6 (209-255)||(7485121-7485167)
chr6 (205-255)||(9093609-9093659)
chr6 (205-250)||(11363426-11363471)
chr6 (207-255)||(5623125-5623173)
chr6 (200-256)||(31671126-31671182)
chr6 (201-252)||(9732439-9732490)
chr6 (205-255)||(415271-415321)
chr6 (205-255)||(1402963-1403013)
chr6 (201-255)||(2117366-2117420)
chr6 (201-243)||(22742329-22742371)
chr6 (201-255)||(24626258-24626312)
chr6 (205-255)||(29274282-29274332)
chr6 (205-254)||(5550099-5550148)
chr6 (101-185)||(8349756-8349841)
chr6 (205-245)||(24836262-24836302)
chr6 (200-255)||(33817824-33817880)
[»] chr3 (21 HSPs)
chr3 (199-251)||(3467445-3467497)
chr3 (201-254)||(22214735-22214788)
chr3 (205-280)||(14145879-14145954)
chr3 (205-255)||(10101529-10101579)
chr3 (205-255)||(10212454-10212504)
chr3 (205-255)||(36783387-36783437)
chr3 (208-280)||(21367637-21367709)
chr3 (207-255)||(33405220-33405268)
chr3 (205-253)||(48397613-48397661)
chr3 (208-255)||(1217853-1217900)
chr3 (100-182)||(21862271-21862354)
chr3 (205-255)||(2318611-2318661)
chr3 (115-168)||(13804695-13804748)
chr3 (205-238)||(15304417-15304450)
chr3 (89-182)||(20874399-20874489)
chr3 (208-253)||(35450560-35450605)
chr3 (205-254)||(44061077-44061126)
chr3 (205-258)||(48323788-48323841)
chr3 (205-253)||(32555036-32555084)
chr3 (211-255)||(41057011-41057055)
chr3 (205-253)||(48364934-48364982)
[»] chr2 (26 HSPs)
chr2 (208-255)||(35755555-35755602)
chr2 (205-255)||(11513865-11513915)
chr2 (100-185)||(31461330-31461416)
chr2 (205-255)||(33942117-33942167)
chr2 (106-185)||(11393747-11393827)
chr2 (106-185)||(11410408-11410488)
chr2 (201-255)||(15377728-15377782)
chr2 (104-158)||(17221660-17221714)
chr2 (209-255)||(18066099-18066145)
chr2 (205-255)||(29300612-29300662)
chr2 (200-253)||(9395092-9395145)
chr2 (208-253)||(9750916-9750961)
chr2 (208-252)||(42907329-42907373)
chr2 (206-253)||(3673775-3673822)
chr2 (206-253)||(33944573-33944620)
chr2 (205-256)||(43199381-43199432)
chr2 (209-255)||(1625871-1625917)
chr2 (205-255)||(5043613-5043663)
chr2 (205-255)||(33256707-33256757)
chr2 (205-255)||(40145429-40145479)
chr2 (205-255)||(42592306-42592356)
chr2 (205-254)||(4550744-4550793)
chr2 (206-251)||(37766766-37766811)
chr2 (205-253)||(11863705-11863753)
chr2 (205-253)||(29316830-29316878)
chr2 (205-249)||(43199852-43199896)
[»] chr8 (24 HSPs)
chr8 (205-255)||(34770859-34770909)
chr8 (205-255)||(42597368-42597418)
chr8 (206-255)||(447364-447413)
chr8 (89-185)||(4558679-4558776)
chr8 (206-255)||(7918826-7918875)
chr8 (200-255)||(6864512-6864567)
chr8 (205-252)||(16210942-16210989)
chr8 (205-255)||(778356-778406)
chr8 (117-181)||(5226511-5226576)
chr8 (205-253)||(773296-773344)
chr8 (205-253)||(787790-787838)
chr8 (219-255)||(7645959-7645995)
chr8 (205-255)||(12361159-12361209)
chr8 (205-255)||(35374426-35374476)
chr8 (201-251)||(39561598-39561648)
chr8 (205-255)||(41336698-41336748)
chr8 (213-255)||(43704431-43704473)
chr8 (84-145)||(7026607-7026668)
chr8 (91-156)||(12972739-12972804)
chr8 (205-242)||(42237488-42237525)
chr8 (205-253)||(2093246-2093294)
chr8 (219-255)||(9834842-9834878)
chr8 (199-255)||(27728074-27728130)
chr8 (102-185)||(39392753-39392837)
[»] scaffold0072 (1 HSPs)
scaffold0072 (92-145)||(4856-4909)
[»] chr1 (25 HSPs)
chr1 (207-255)||(7218127-7218175)
chr1 (207-255)||(25006087-25006135)
chr1 (207-286)||(473133-473212)
chr1 (208-255)||(40394938-40394985)
chr1 (201-255)||(10581130-10581184)
chr1 (205-255)||(27738233-27738283)
chr1 (205-255)||(30371115-30371165)
chr1 (83-145)||(48133072-48133134)
chr1 (205-255)||(49517037-49517087)
chr1 (205-254)||(49557108-49557157)
chr1 (199-255)||(5592738-5592794)
chr1 (211-255)||(37295771-37295815)
chr1 (207-251)||(52059856-52059900)
chr1 (208-255)||(17269220-17269267)
chr1 (205-280)||(31517768-31517843)
chr1 (200-255)||(49888729-49888784)
chr1 (209-255)||(5592019-5592065)
chr1 (205-255)||(28467360-28467410)
chr1 (205-255)||(36070217-36070267)
chr1 (206-255)||(9656618-9656667)
chr1 (205-286)||(24915073-24915154)
chr1 (199-256)||(30257644-30257701)
chr1 (211-251)||(5756743-5756783)
chr1 (94-130)||(26184641-26184677)
chr1 (207-255)||(34952184-34952232)
[»] chr7 (17 HSPs)
chr7 (209-256)||(25296955-25297002)
chr7 (205-255)||(1417231-1417281)
chr7 (205-255)||(9527143-9527193)
chr7 (206-255)||(17989076-17989125)
chr7 (206-267)||(30496672-30496733)
chr7 (205-256)||(22296280-22296331)
chr7 (205-280)||(30456478-30456553)
chr7 (205-280)||(40689014-40689089)
chr7 (205-252)||(45813236-45813283)
chr7 (205-255)||(27548230-27548280)
chr7 (206-252)||(28340452-28340498)
chr7 (205-251)||(45777228-45777274)
chr7 (201-255)||(47046161-47046215)
chr7 (336-372)||(19624282-19624319)
chr7 (205-250)||(30180018-30180063)
chr7 (206-250)||(13960884-13960928)
chr7 (208-252)||(47177606-47177650)
[»] chr5 (14 HSPs)
chr5 (205-280)||(9202776-9202851)
chr5 (206-256)||(4855666-4855716)
chr5 (205-255)||(12595793-12595843)
chr5 (205-286)||(12425538-12425619)
chr5 (90-184)||(26516180-26516275)
chr5 (208-255)||(41957504-41957551)
chr5 (201-256)||(42646878-42646933)
chr5 (205-255)||(10272484-10272534)
chr5 (205-243)||(10363717-10363755)
chr5 (205-255)||(32059642-32059692)
chr5 (201-255)||(34205202-34205256)
chr5 (206-255)||(41534410-41534458)
chr5 (206-250)||(15905563-15905607)
chr5 (82-185)||(35135754-35135858)
[»] scaffold0091 (1 HSPs)
scaffold0091 (117-181)||(5928-5993)
[»] scaffold0103 (1 HSPs)
scaffold0103 (206-242)||(51536-51572)


Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 8 - 372
Target Start/End: Complemental strand, 6927793 - 6927416
Alignment:
Q  8 acaaagttggttactactagttagttcattaagctcttcataaataggagcatattaagtcattcactatcttttagaccctgtttggacacacaactta 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6927793 acaaagttggttactactagttagttcattaagctcttcataaataggagcatattaagtcattcactatcttttagaccctgtttggacacacaactta 6927694  T
Q  108 attgagcacttatagcataaacgtctatcatttaagtgtttaagtataaacactttctatacaaaagataaaataaagnnnnnnnnggaggaaaaaggat 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||    
T  6927693 attgagcacttatagcataaacgtctatcatttaagtgtttaagtataaacactttctatacaaaagataaaataaagttttttttggaggaaaaaggat 6927594  T
Q  208 aaaataaagttaaattgttttcatgtaaactataagttgttttcataaattgtctcggatcacttatgaaaatgagttg-------------tgagacat 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              |||||||    
T  6927593 aaaataaagttaaattgttttcatgtaaactataagttgttttcataaattgtctcggatcacttatgaaaatgagttgaaaattagtttgtagagacat 6927494  T
Q  295 gttataaacggttaccataaaatattccaaacactctcacaacaagtgcttatgtcaatagaaaactcaaataagtca 372  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6927493 gttataaacggttaccataaaatattccaaacactctcacaacaagtgcttatgtcaatagaaaactcaaataagtca 6927416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 25885826 - 25885876
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 255  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  25885826 gataaaataaagttaaattgttttcgtgtaagctataagttgttttcataa 25885876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 89 - 144
Target Start/End: Original strand, 24193466 - 24193521
Alignment:
Q  89 tgtttggacacacaacttaattgagcacttatagcataaacgtctatcatttaagt 144  Q
    |||||||| | |||||||||||||||||||||||||||||||  |||||| |||||    
T  24193466 tgtttggataaacaacttaattgagcacttatagcataaacgcttatcatataagt 24193521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 201 - 256
Target Start/End: Complemental strand, 27043937 - 27043882
Alignment:
Q  201 aaaggataaaataaagttaaattgttttcatgtaaactataagttgttttcataaa 256  Q
    ||||||||||||||||||||||||||||| | ||| ||||||| |||||| |||||    
T  27043937 aaaggataaaataaagttaaattgttttcgtataagctataagatgtttttataaa 27043882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 255
Target Start/End: Original strand, 24160953 - 24161007
Alignment:
Q  201 aaaggataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 255  Q
    |||||||||||| |||||||||| ||||||||||  ||||||||||| |||||||    
T  24160953 aaaggataaaatcaagttaaattattttcatgtaggctataagttgtgttcataa 24161007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 251
Target Start/End: Complemental strand, 42321982 - 42321936
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaactataagttgttttc 251  Q
    ||||||||||||| ||||||||||||| |||| ||||||||||||||    
T  42321982 gataaaataaagtcaaattgttttcatataaattataagttgttttc 42321936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 256
Target Start/End: Original strand, 49219107 - 49219157
Alignment:
Q  206 ataaaataaagttaaattgttttcatgtaaactataagttgttttcataaa 256  Q
    |||||||||||| ||||| ||||||| ||| ||||||||||||||||||||    
T  49219107 ataaaataaagtcaaattattttcatataagctataagttgttttcataaa 49219157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 205 - 254
Target Start/End: Complemental strand, 47119068 - 47119019
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaactataagttgttttcata 254  Q
    ||||||| ||||||||||||||||||| ||| ||||||||||| ||||||    
T  47119068 gataaaacaaagttaaattgttttcatataagctataagttgtattcata 47119019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 13949947 - 13949903
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaactataagttgttt 249  Q
    ||||||||||||| ||||||||||||| ||| |||||||||||||    
T  13949947 gataaaataaagtcaaattgttttcatataagctataagttgttt 13949903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 205 - 256
Target Start/End: Original strand, 26883962 - 26884013
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataaa 256  Q
    |||||||| |||||||||||||||||| ||| |||||||| |||||| ||||    
T  26883962 gataaaatgaagttaaattgttttcatataagctataagtcgttttcgtaaa 26884013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 255
Target Start/End: Complemental strand, 437535 - 437485
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 255  Q
    ||||||||||||||||||||| ||||| |||  | ||||||||||||||||    
T  437535 gataaaataaagttaaattgtgttcatataagttttaagttgttttcataa 437485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 3175918 - 3175968
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 255  Q
    ||||||||||||| |||||||||||| ||||  |||||| |||||||||||    
T  3175918 gataaaataaagtcaaattgttttcaagtaagttataagctgttttcataa 3175968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 29263337 - 29263387
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 255  Q
    ||||||||||||||| ||||||||||  ||| | |||||||||||||||||    
T  29263337 gataaaataaagttacattgttttcaaataagcgataagttgttttcataa 29263387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 51630078 - 51630128
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 255  Q
    |||||||||||||||||||||||| || ||| ||||||| | |||||||||    
T  51630078 gataaaataaagttaaattgttttgatataagctataagctattttcataa 51630128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 255
Target Start/End: Complemental strand, 52746943 - 52746893
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 255  Q
    ||||||||||||||||||||||||  ||||| | ||||| |||||||||||    
T  52746943 gataaaataaagttaaattgtttttgtgtaagccataagctgttttcataa 52746893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 254
Target Start/End: Original strand, 21157731 - 21157784
Alignment:
Q  201 aaaggataaaataaagttaaattgttttcatgtaaactataagttgttttcata 254  Q
    |||| ||||| |||||| ||| ||||||||||||| ||||||| ||||||||||    
T  21157731 aaagtataaactaaagtcaaactgttttcatgtaagctataagatgttttcata 21157784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 336 - 372
Target Start/End: Original strand, 32071968 - 32072005
Alignment:
Q  336 acaagtgcttatgtcaataga-aaactcaaataagtca 372  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  32071968 acaagtgcttatgtcaatagataaactcaaataagtca 32072005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 255
Target Start/End: Original strand, 40174531 - 40174580
Alignment:
Q  206 ataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 255  Q
    ||||| ||||||||||||||||||||  || ||||||| |||||||||||    
T  40174531 ataaattaaagttaaattgttttcataaaagctataagctgttttcataa 40174580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 144
Target Start/End: Complemental strand, 41162240 - 41162187
Alignment:
Q  91 tttggacacacaacttaattgagcacttatagcataaacgtctatcatttaagt 144  Q
    |||||| | ||||||||||| |||||||||| ||||| ||| ||||||||||||    
T  41162240 tttggataaacaacttaattaagcacttataacataagcgtttatcatttaagt 41162187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 254
Target Start/End: Original strand, 47946165 - 47946214
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaactataagttgttttcata 254  Q
    |||||||| |||||||||||||||| | ||| |||||| |||||||||||    
T  47946165 gataaaatgaagttaaattgttttcgtataagctataaattgttttcata 47946214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 280
Target Start/End: Complemental strand, 50004245 - 50004172
Alignment:
Q  207 taaaataaagttaaattgttttcatgtaaactataagttgttttcataaattgtctcggatcacttatgaaaat 280  Q
    |||| |||||||||||||||||||| ||||| || || ||||||| ||| || ||| |||  ||||||||||||    
T  50004245 taaattaaagttaaattgttttcatataaacaatgagctgttttcctaagttatcttggagaacttatgaaaat 50004172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 255
Target Start/End: Original strand, 11389487 - 11389543
Alignment:
Q  199 aaaaaggataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 255  Q
    ||||| |||||| |||||||||| |||||| || ||||||||||||  |||||||||    
T  11389487 aaaaaagataaagtaaagttaaactgttttaatataaactataagtcattttcataa 11389543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 100 - 185
Target Start/End: Complemental strand, 1252 - 1166
Alignment:
Q  100 acaacttaattgagcacttatagcataaacgtctatcatttaagtgtttaagtataaacactttctat-acaaaagataaaataaag 185  Q
    ||||||||||| || |||||||||||||||||||||||| |||||| ||| |||||| |  ||||||| ||||||||||||||||||    
T  1252 acaacttaattaagtacttatagcataaacgtctatcatataagtgcttatgtataagctatttctataacaaaagataaaataaag 1166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 100 - 185
Target Start/End: Original strand, 2723 - 2809
Alignment:
Q  100 acaacttaattgagcacttatagcataaacgtctatcatttaagtgtttaagtataaacactttctat-acaaaagataaaataaag 185  Q
    ||||||||||| || |||||||||||||||||||||||| |||||| ||| |||||| |  ||||||| ||||||||||||||||||    
T  2723 acaacttaattaagtacttatagcataaacgtctatcatataagtgcttatgtataagctatttctataacaaaagataaaataaag 2809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 205 - 256
Target Start/End: Original strand, 27543 - 27594
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataaa 256  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  27543 gataaaataaagtcaaattgttttcatataaactataagttgttttcataaa 27594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 200 - 256
Target Start/End: Original strand, 2112163 - 2112218
Alignment:
Q  200 aaaaggataaaataaagttaaattgttttcatgtaaactataagttgttttcataaa 256  Q
    |||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  2112163 aaaaagataaaataaagttaaattgttt-catataaactataagttgttttcataaa 2112218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 256
Target Start/End: Complemental strand, 28660863 - 28660812
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataaa 256  Q
    ||||||||||||||||||| ||||||| |||| ||||| |||||||||||||    
T  28660863 gataaaataaagttaaattattttcatataaattataaattgttttcataaa 28660812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 4006681 - 4006731
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 255  Q
    ||||||||||||| |||||||||| || ||| |||||||||||||||||||    
T  4006681 gataaaataaagtcaaattgtttttatataagctataagttgttttcataa 4006731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 255
Target Start/End: Complemental strand, 7485167 - 7485121
Alignment:
Q  209 aaataaagttaaattgttttcatgtaaactataagttgttttcataa 255  Q
    ||||||||||||||| ||||||| ||| |||||||||||||||||||    
T  7485167 aaataaagttaaatttttttcatataagctataagttgttttcataa 7485121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 255
Target Start/End: Complemental strand, 9093659 - 9093609
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 255  Q
    ||||||||||||||||||||||||| | ||| ||||||| |||||||||||    
T  9093659 gataaaataaagttaaattgttttcgtataagctataagctgttttcataa 9093609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 11363471 - 11363426
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaactataagttgtttt 250  Q
    ||||||||||||||||||| |||||||||||  |||||||||||||    
T  11363471 gataaaataaagttaaattattttcatgtaagttataagttgtttt 11363426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 255
Target Start/End: Original strand, 5623125 - 5623173
Alignment:
Q  207 taaaataaagttaaattgttttcatgtaaactataagttgttttcataa 255  Q
    ||||||||||  |||| |||||||| |||||||||||||||||||||||    
T  5623125 taaaataaagccaaatagttttcatataaactataagttgttttcataa 5623173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 256
Target Start/End: Complemental strand, 31671182 - 31671126
Alignment:
Q  200 aaaaggataaaataaagttaaattgttttcatgtaaactataagttgttttcataaa 256  Q
    |||| ||||||| ||||||||||||||||||| ||| ||||||| ||||||| ||||    
T  31671182 aaaaagataaaacaaagttaaattgttttcatataagctataagctgttttcgtaaa 31671126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 201 - 252
Target Start/End: Original strand, 9732439 - 9732490
Alignment:
Q  201 aaaggataaaataaagttaaattgttttcatgtaaactataagttgttttca 252  Q
    |||||||||||| |||| |||||||||||||| ||  |||||||||||||||    
T  9732439 aaaggataaaattaagtcaaattgttttcatgcaaggtataagttgttttca 9732490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 415271 - 415321
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 255  Q
    ||||||| ||||||||||||||||| | ||| |||||||||||||| ||||    
T  415271 gataaaacaaagttaaattgttttcgtataagctataagttgtttttataa 415321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 1402963 - 1403013
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 255  Q
    ||||||||||||||||| | ||||||| ||| |||||| ||||||||||||    
T  1402963 gataaaataaagttaaactattttcatataagctataaattgttttcataa 1403013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 255
Target Start/End: Original strand, 2117366 - 2117420
Alignment:
Q  201 aaaggataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 255  Q
    ||||||||||| ||||| ||| | ||||||| ||| |||||||||||||||||||    
T  2117366 aaaggataaaacaaagtcaaactattttcatataatctataagttgttttcataa 2117420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 243
Target Start/End: Original strand, 22742329 - 22742371
Alignment:
Q  201 aaaggataaaataaagttaaattgttttcatgtaaactataag 243  Q
    ||||||||||||||||| ||||||||||||| ||| |||||||    
T  22742329 aaaggataaaataaagtcaaattgttttcatataagctataag 22742371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 255
Target Start/End: Original strand, 24626258 - 24626312
Alignment:
Q  201 aaaggataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 255  Q
    ||||||||||| ||||||||||||||||  | ||  |||||||||||||||||||    
T  24626258 aaaggataaaacaaagttaaattgtttttgtatattctataagttgttttcataa 24626312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 255
Target Start/End: Complemental strand, 29274332 - 29274282
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 255  Q
    ||||||||||||| ||||||||||||| ||| ||||||  |||||||||||    
T  29274332 gataaaataaagtcaaattgttttcatataagctataaactgttttcataa 29274282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 254
Target Start/End: Original strand, 5550099 - 5550148
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaactataagttgttttcata 254  Q
    ||||| ||||||| ||||||||||||| ||| ||||||| ||||||||||    
T  5550099 gataacataaagtcaaattgttttcatataagctataagctgttttcata 5550148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 185
Target Start/End: Complemental strand, 8349841 - 8349756
Alignment:
Q  101 caacttaattgagcacttatagcataaacgtctatcatttaagtgtttaagtataaacactttctat-acaaaagataaaataaag 185  Q
    |||||||||| ||| |||||||||||| |   |||||| |||||||||  ||||||||  ||||| | ||||||||||||||||||    
T  8349841 caacttaattaagcgcttatagcataaccacttatcatataagtgtttgtgtataaactatttctctaacaaaagataaaataaag 8349756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 245
Target Start/End: Complemental strand, 24836302 - 24836262
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaactataagtt 245  Q
    ||||||||||||| ||||||||||| | |||||||||||||    
T  24836302 gataaaataaagtcaaattgttttcgtataaactataagtt 24836262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 255
Target Start/End: Complemental strand, 33817880 - 33817824
Alignment:
Q  200 aaaaggataaaataaagttaaattgttttcatgtaaa-ctataagttgttttcataa 255  Q
    |||| ||||||||||||| ||  ||||||||||||||  ||||||||||||||||||    
T  33817880 aaaaagataaaataaagtaaacctgttttcatgtaaagttataagttgttttcataa 33817824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 3467497 - 3467445
Alignment:
Q  199 aaaaaggataaaataaagttaaattgttttcatgtaaactataagttgttttc 251  Q
    ||||||||||||||||||| ||||||||||||| || ||||||||||||||||    
T  3467497 aaaaaggataaaataaagtcaaattgttttcatatagactataagttgttttc 3467445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 254
Target Start/End: Complemental strand, 22214788 - 22214735
Alignment:
Q  201 aaaggataaaataaagttaaattgttttcatgtaaactataagttgttttcata 254  Q
    ||||||||||||||||| ||||||| ||||| ||| ||||||||||||||||||    
T  22214788 aaaggataaaataaagtgaaattgtattcatataacctataagttgttttcata 22214735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 280
Target Start/End: Original strand, 14145879 - 14145954
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataaattgtctcggatcacttatgaaaat 280  Q
    ||||||||||||||||||||||||| | ||  ||||||||| |||||||||  | ||| |||| ||||||||||||    
T  14145879 gataaaataaagttaaattgttttcgtatatgctataagttattttcataagctatcttggattacttatgaaaat 14145954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 255
Target Start/End: Complemental strand, 10101579 - 10101529
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 255  Q
    ||||||||||||||||||||||||||| |||  || |||||||||||||||    
T  10101579 gataaaataaagttaaattgttttcatataagataaaagttgttttcataa 10101529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 255
Target Start/End: Complemental strand, 10212504 - 10212454
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 255  Q
    ||||||||||||||||||||||||||| |||  || |||||||||||||||    
T  10212504 gataaaataaagttaaattgttttcatataagataaaagttgttttcataa 10212454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 255
Target Start/End: Complemental strand, 36783437 - 36783387
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 255  Q
    ||||||||||||| ||||||||||||| |||||||| || |||||||||||    
T  36783437 gataaaataaagtaaaattgttttcatataaactattagctgttttcataa 36783387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 280
Target Start/End: Original strand, 21367637 - 21367709
Alignment:
Q  208 aaaataaagttaaattgttttcatgtaaactataagttgttttcataaattgtctcggatcacttatgaaaat 280  Q
    |||||||||||||||||||||| | |||  ||||||||||||||||||  | ||| |||  ||||||||||||    
T  21367637 aaaataaagttaaattgttttcgtataatgtataagttgttttcataagctatcttggagaacttatgaaaat 21367709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 255
Target Start/End: Complemental strand, 33405268 - 33405220
Alignment:
Q  207 taaaataaagttaaattgttttcatgtaaactataagttgttttcataa 255  Q
    |||||||||||||| |||||||||| ||| ||||||| |||||||||||    
T  33405268 taaaataaagttaatttgttttcatataagctataagctgttttcataa 33405220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 253
Target Start/End: Original strand, 48397613 - 48397661
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaactataagttgttttcat 253  Q
    ||||||||||||| |||||||||| || ||| |||||||||||||||||    
T  48397613 gataaaataaagtcaaattgtttttatttaagctataagttgttttcat 48397661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 208 - 255
Target Start/End: Complemental strand, 1217900 - 1217853
Alignment:
Q  208 aaaataaagttaaattgttttcatgtaaactataagttgttttcataa 255  Q
    ||||| ||||||||||||||||||||||  |||||| |||||||||||    
T  1217900 aaaatgaagttaaattgttttcatgtaagttataagctgttttcataa 1217853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 100 - 182
Target Start/End: Complemental strand, 21862354 - 21862271
Alignment:
Q  100 acaacttaattgagcacttatagcataaacgtctatcatttaagtgtttaagtataaacactttcta-tacaaaagataaaata 182  Q
    |||||| |||| |||||||||||||||||||| |||| | |||||| ||  |||||| |  |||||| ||||||||||||||||    
T  21862354 acaactcaattaagcacttatagcataaacgtttatcttataagtgcttgcgtataagctgtttctattacaaaagataaaata 21862271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 2318611 - 2318661
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 255  Q
    |||||||| || | ||||||||||||| |||||||||||||||||| ||||    
T  2318611 gataaaatcaaatcaaattgttttcatataaactataagttgtttttataa 2318661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 168
Target Start/End: Original strand, 13804695 - 13804748
Alignment:
Q  115 acttatagcataaacgtctatcatttaagtgtttaagtataaacactttctata 168  Q
    ||||||||||||||||   |||||||||||||||| ||||||||  ||||||||    
T  13804695 acttatagcataaacgctgatcatttaagtgtttatgtataaactatttctata 13804748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 238
Target Start/End: Complemental strand, 15304450 - 15304417
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaact 238  Q
    ||||||||||||||||||||||||||| ||||||    
T  15304450 gataaaataaagttaaattgttttcatataaact 15304417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 182
Target Start/End: Complemental strand, 20874489 - 20874399
Alignment:
Q  89 tgtttggacacacaacttaattgagcacttatagcataaacgtctatcatttaagtgtttaagtataaacactttctat-acaaaagataaaata 182  Q
    |||||||| | ||||||||||| ||||||||||||||||| |  |||||| ||||||    |||||||||  ||||||| ||||||| |||||||    
T  20874489 tgtttggataaacaacttaattaagcacttatagcataaatgcatatcatataagtg----agtataaactatttctatgacaaaagctaaaata 20874399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 253
Target Start/End: Original strand, 35450560 - 35450605
Alignment:
Q  208 aaaataaagttaaattgttttcatgtaaactataagttgttttcat 253  Q
    |||||||||| ||||||||||| | ||| |||||||||||||||||    
T  35450560 aaaataaagtaaaattgttttcttataagctataagttgttttcat 35450605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 254
Target Start/End: Complemental strand, 44061126 - 44061077
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaactataagttgttttcata 254  Q
    |||||||||| |||||||||||||  | ||| ||||||||||||||||||    
T  44061126 gataaaataaggttaaattgtttttctataagctataagttgttttcata 44061077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 258
Target Start/End: Original strand, 48323788 - 48323841
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataaatt 258  Q
    ||||| ||||||| ||||||||||  ||||| |||||| |||||||||||||||    
T  48323788 gataatataaagtcaaattgtttttctgtaagctataaattgttttcataaatt 48323841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 253
Target Start/End: Complemental strand, 32555084 - 32555036
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaactataagttgttttcat 253  Q
    ||||||||||||| ||||| ||||| | ||| |||||||||||||||||    
T  32555084 gataaaataaagtcaaattattttcctataagctataagttgttttcat 32555036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 255
Target Start/End: Original strand, 41057011 - 41057055
Alignment:
Q  211 ataaagttaaattgttttcatgtaaactataagttgttttcataa 255  Q
    ||||| |||| |||||||||| ||| |||||||||||||||||||    
T  41057011 ataaaattaatttgttttcatataagctataagttgttttcataa 41057055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 253
Target Start/End: Complemental strand, 48364982 - 48364934
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaactataagttgttttcat 253  Q
    ||||||||||||| ||||||||||||| ||  | |||||||||||||||    
T  48364982 gataaaataaagtcaaattgttttcatttacgccataagttgttttcat 48364934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 255
Target Start/End: Complemental strand, 35755602 - 35755555
Alignment:
Q  208 aaaataaagttaaattgttttcatgtaaactataagttgttttcataa 255  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||    
T  35755602 aaaataaagtcaaattgttttcatgtaagctataagttgttttcataa 35755555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 11513865 - 11513915
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 255  Q
    ||||||||||||| ||||||||||||| ||| |||||||||||||||||||    
T  11513865 gataaaataaagtcaaattgttttcatataagctataagttgttttcataa 11513915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 100 - 185
Target Start/End: Original strand, 31461330 - 31461416
Alignment:
Q  100 acaacttaattgagcacttatagcataaacgtctatcatttaagtgtttaagtataaacactttctat-acaaaagataaaataaag 185  Q
    ||||||||||| ||||||| |||||||||||| |||||| |||||| |||  ||||| |  ||||||| ||||||||||||||||||    
T  31461330 acaacttaattaagcacttctagcataaacgtatatcatataagtggttatatataagctatttctataacaaaagataaaataaag 31461416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 33942117 - 33942167
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 255  Q
    ||||||||||||| ||| ||||||||||||| |||||||||||||||||||    
T  33942117 gataaaataaagtcaaactgttttcatgtaagctataagttgttttcataa 33942167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 106 - 185
Target Start/End: Complemental strand, 11393827 - 11393747
Alignment:
Q  106 taattgagcacttatagcataaacgtctatcatttaagtgtttaagtataaacactttctata-caaaagataaaataaag 185  Q
    ||||| |||||||||||||||||| | ||||||||||||| ||| |||||| |  |||||||| ||||||||| |||||||    
T  11393827 taattaagcacttatagcataaacatttatcatttaagtgcttatgtataagctatttctataccaaaagatacaataaag 11393747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 106 - 185
Target Start/End: Complemental strand, 11410488 - 11410408
Alignment:
Q  106 taattgagcacttatagcataaacgtctatcatttaagtgtttaagtataaacactttctata-caaaagataaaataaag 185  Q
    ||||| |||||||||||||||||| | ||||||||||||| ||| |||||| |  |||||||| ||||||||| |||||||    
T  11410488 taattaagcacttatagcataaacatttatcatttaagtgcttatgtataagctatttctataccaaaagatacaataaag 11410408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 255
Target Start/End: Original strand, 15377728 - 15377782
Alignment:
Q  201 aaaggataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 255  Q
    ||||||||||||||||||| ||||||||||| |||  |||||| |||||||||||    
T  15377728 aaaggataaaataaagttagattgttttcatataagttataagctgttttcataa 15377782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 17221714 - 17221660
Alignment:
Q  104 cttaattgagcacttatagcataaacgtctatcatttaagtgtttaagtataaac 158  Q
    ||||||| |||||||||||||||| | | ||||||||||||||||| ||||||||    
T  17221714 cttaattaagcacttatagcataagcctttatcatttaagtgtttatgtataaac 17221660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 255
Target Start/End: Original strand, 18066099 - 18066145
Alignment:
Q  209 aaataaagttaaattgttttcatgtaaactataagttgttttcataa 255  Q
    ||||||||||||||||||||||| ||| ||||||| |||||||||||    
T  18066099 aaataaagttaaattgttttcatataagctataagctgttttcataa 18066145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 29300612 - 29300662
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 255  Q
    |||||||||||| | ||||||||||||||||  ||||||||||||||||||    
T  29300612 gataaaataaaggtgaattgttttcatgtaagttataagttgttttcataa 29300662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 200 - 253
Target Start/End: Original strand, 9395092 - 9395145
Alignment:
Q  200 aaaaggataaaataaagttaaattgttttcatgtaaactataagttgttttcat 253  Q
    |||| |||||||||||| |||||||||||||| ||| ||||||| |||||||||    
T  9395092 aaaaagataaaataaagctaaattgttttcatataatctataagctgttttcat 9395145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 208 - 253
Target Start/End: Original strand, 9750916 - 9750961
Alignment:
Q  208 aaaataaagttaaattgttttcatgtaaactataagttgttttcat 253  Q
    |||||||||||||||||||||| | ||| |||||||||||||||||    
T  9750916 aaaataaagttaaattgttttcttataagctataagttgttttcat 9750961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 252
Target Start/End: Original strand, 42907329 - 42907373
Alignment:
Q  208 aaaataaagttaaattgttttcatgtaaactataagttgttttca 252  Q
    |||||||||||||||||||||| | ||| ||||||||||||||||    
T  42907329 aaaataaagttaaattgttttcgtttaagctataagttgttttca 42907373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 206 - 253
Target Start/End: Original strand, 3673775 - 3673822
Alignment:
Q  206 ataaaataaagttaaattgttttcatgtaaactataagttgttttcat 253  Q
    |||||||||||||||||||||||||| |||  |||||||| |||||||    
T  3673775 ataaaataaagttaaattgttttcatataagttataagtttttttcat 3673822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 206 - 253
Target Start/End: Original strand, 33944573 - 33944620
Alignment:
Q  206 ataaaataaagttaaattgttttcatgtaaactataagttgttttcat 253  Q
    |||||||||||| ||||||||||||| ||| |||||| ||||||||||    
T  33944573 ataaaataaagtcaaattgttttcatataagctataaattgttttcat 33944620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 205 - 256
Target Start/End: Original strand, 43199381 - 43199432
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataaa 256  Q
    ||||||||||||||||||| | ||| | ||| ||||||||||||||||||||    
T  43199381 gataaaataaagttaaattatcttcgtataagctataagttgttttcataaa 43199432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 255
Target Start/End: Original strand, 1625871 - 1625917
Alignment:
Q  209 aaataaagttaaattgttttcatgtaaactataagttgttttcataa 255  Q
    ||||||||||||||||||||| | |||  ||||||||||||||||||    
T  1625871 aaataaagttaaattgttttcgtataagttataagttgttttcataa 1625917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 255
Target Start/End: Complemental strand, 5043663 - 5043613
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 255  Q
    ||||||||||||| ||| ||||||||| ||| ||| |||||||||||||||    
T  5043663 gataaaataaagtcaaactgttttcatataagctagaagttgttttcataa 5043613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 33256707 - 33256757
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 255  Q
    ||||||||||||| ||| ||||||||| |||||||||||  ||||||||||    
T  33256707 gataaaataaagtcaaactgttttcatataaactataagcagttttcataa 33256757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 40145429 - 40145479
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 255  Q
    ||||||||||||| || ||||||| ||||||  ||||||||||||||||||    
T  40145429 gataaaataaagtcaagttgtttttatgtaagttataagttgttttcataa 40145479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 42592306 - 42592356
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 255  Q
    |||||||| ||||||| |||||||||| ||| ||||||| |||||||||||    
T  42592306 gataaaattaagttaacttgttttcatataagctataagctgttttcataa 42592356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 254
Target Start/End: Original strand, 4550744 - 4550793
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaactataagttgttttcata 254  Q
    |||||||||| || ||  ||||||||| ||||||||||||||||||||||    
T  4550744 gataaaataacgtcaagctgttttcatataaactataagttgttttcata 4550793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 251
Target Start/End: Original strand, 37766766 - 37766811
Alignment:
Q  206 ataaaataaagttaaattgttttcatgtaaactataagttgttttc 251  Q
    |||||||||||| ||| ||||||| | |||||||||||||||||||    
T  37766766 ataaaataaagtcaaaatgttttcgtataaactataagttgttttc 37766811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 253
Target Start/End: Complemental strand, 11863753 - 11863705
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaactataagttgttttcat 253  Q
    ||||||||| ||||||||||||||||| |||  |||||| |||||||||    
T  11863753 gataaaatagagttaaattgttttcatataatttataagctgttttcat 11863705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 253
Target Start/End: Complemental strand, 29316878 - 29316830
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaactataagttgttttcat 253  Q
    |||||||||| |||||||||||||||  ||| ||||||| |||||||||    
T  29316878 gataaaataaggttaaattgttttcacataatctataagctgttttcat 29316830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 43199896 - 43199852
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaactataagttgttt 249  Q
    ||||||||||||||||||||||||  | ||| |||||||||||||    
T  43199896 gataaaataaagttaaattgtttttgtataagctataagttgttt 43199852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 34770859 - 34770909
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 255  Q
    ||||||||||||| ||||||||||||| ||| |||||||||||||||||||    
T  34770859 gataaaataaagtcaaattgttttcatttaagctataagttgttttcataa 34770909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 42597368 - 42597418
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 255  Q
    ||||||||||||| |||||||||||||| || |||||||||||||||||||    
T  42597368 gataaaataaagtaaaattgttttcatgcaagctataagttgttttcataa 42597418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 255
Target Start/End: Complemental strand, 447413 - 447364
Alignment:
Q  206 ataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 255  Q
    |||||||||||||| ||||||||||| |||| ||||||||||||||||||    
T  447413 ataaaataaagttacattgttttcatttaaaatataagttgttttcataa 447364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 185
Target Start/End: Original strand, 4558679 - 4558776
Alignment:
Q  89 tgtttggacacacaacttaattgagcacttatagcataaacgtctatcatttaagtgtttaagtataaacactttctat-acaaaagataaaataaag 185  Q
    |||||||| | |||||||||||  || |||||||||||||||| ||| || |||||||||| |||||| |  ||||||| | ||||||||||||||||    
T  4558679 tgtttggataaacaacttaattacgcgcttatagcataaacgtttattatgtaagtgtttatgtataagctatttctataataaaagataaaataaag 4558776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 255
Target Start/End: Complemental strand, 7918875 - 7918826
Alignment:
Q  206 ataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 255  Q
    |||||||||||||||||| ||||| ||||| |||||||||||||||||||    
T  7918875 ataaaataaagttaaatttttttcttgtaagctataagttgttttcataa 7918826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 200 - 255
Target Start/End: Complemental strand, 6864567 - 6864512
Alignment:
Q  200 aaaaggataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 255  Q
    |||||||||||||||||| ||| | |||||||||||  ||||||||||||||||||    
T  6864567 aaaaggataaaataaagtcaaactattttcatgtaagttataagttgttttcataa 6864512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 252
Target Start/End: Complemental strand, 16210989 - 16210942
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaactataagttgttttca 252  Q
    ||||||||||||||| ||||||||||| ||| ||||||||||||||||    
T  16210989 gataaaataaagttacattgttttcatataagctataagttgttttca 16210942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 778356 - 778406
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 255  Q
    ||||||||||||||||||||||||||| | | ||||||| |||||||||||    
T  778356 gataaaataaagttaaattgttttcattttagctataagctgttttcataa 778406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 117 - 181
Target Start/End: Original strand, 5226511 - 5226576
Alignment:
Q  117 ttatagcataaacgtctatcatttaagtgtttaagtataaacactttctat-acaaaagataaaat 181  Q
    ||||||||||||| | |||||| |||||||||| ||||||||| |||| || ||||||||||||||    
T  5226511 ttatagcataaacatttatcatataagtgtttatgtataaacaatttcaataacaaaagataaaat 5226576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 253
Target Start/End: Original strand, 773296 - 773344
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaactataagttgttttcat 253  Q
    ||||||||||||||||||||||||||| | | ||||||| |||||||||    
T  773296 gataaaataaagttaaattgttttcattttagctataagctgttttcat 773344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 253
Target Start/End: Original strand, 787790 - 787838
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaactataagttgttttcat 253  Q
    ||||||||||||||||||||||||||| | | ||||||| |||||||||    
T  787790 gataaaataaagttaaattgttttcattttagctataagctgttttcat 787838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 255
Target Start/End: Original strand, 7645959 - 7645995
Alignment:
Q  219 aaattgttttcatgtaaactataagttgttttcataa 255  Q
    ||||||||||||||||| |||||||||||||||||||    
T  7645959 aaattgttttcatgtaagctataagttgttttcataa 7645995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 12361159 - 12361209
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 255  Q
    |||||||| |||| ||||||||||||| ||| ||||||| |||||||||||    
T  12361159 gataaaatgaagtcaaattgttttcatataagctataagctgttttcataa 12361209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 255
Target Start/End: Complemental strand, 35374476 - 35374426
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 255  Q
    ||||||||||||||||||||||||||| ||| ||||||  || ||||||||    
T  35374476 gataaaataaagttaaattgttttcatataagctataatctgatttcataa 35374426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 251
Target Start/End: Complemental strand, 39561648 - 39561598
Alignment:
Q  201 aaaggataaaataaagttaaattgttttcatgtaaactataagttgttttc 251  Q
    |||| ||||||||||||  | |||||||||| |||||||||||||||||||    
T  39561648 aaagtataaaataaagtcgatttgttttcatctaaactataagttgttttc 39561598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 255
Target Start/End: Complemental strand, 41336748 - 41336698
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 255  Q
    ||||||||| ||| ||||||||||||| ||||||| || ||||||||||||    
T  41336748 gataaaatatagtcaaattgttttcatataaactagaacttgttttcataa 41336698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 255
Target Start/End: Complemental strand, 43704473 - 43704431
Alignment:
Q  213 aaagttaaattgttttcatgtaaactataagttgttttcataa 255  Q
    ||||| ||| ||||||||| |||||||||||||||||||||||    
T  43704473 aaagtcaaactgttttcatataaactataagttgttttcataa 43704431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 145
Target Start/End: Original strand, 7026607 - 7026668
Alignment:
Q  84 gaccctgtttggacacacaacttaattgagcacttatagcataaacgtctatcatttaagtg 145  Q
    ||||||||||||| | ||||||||||| |||| ||| ||||||||| | |||||| ||||||    
T  7026607 gaccctgtttggataaacaacttaattaagcatttacagcataaacatttatcatataagtg 7026668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 156
Target Start/End: Original strand, 12972739 - 12972804
Alignment:
Q  91 tttggacacacaacttaattgagcacttatagcataaacgtctatcatttaagtgtttaagtataa 156  Q
    |||||||| ||||||||||| ||| |||||||||||| | | |||||| |||||| ||| ||||||    
T  12972739 tttggacaaacaacttaattaagcgcttatagcataagcatttatcatataagtgcttatgtataa 12972804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 242
Target Start/End: Complemental strand, 42237525 - 42237488
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaactataa 242  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  42237525 gataaaataaagttaaattgttttcatataagctataa 42237488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 253
Target Start/End: Original strand, 2093246 - 2093294
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaactataagttgttttcat 253  Q
    ||||||||||||| |||| |||||| | ||| |||||||||||||||||    
T  2093246 gataaaataaagtcaaatggttttcttttaagctataagttgttttcat 2093294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 255
Target Start/End: Complemental strand, 9834878 - 9834842
Alignment:
Q  219 aaattgttttcatgtaaactataagttgttttcataa 255  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  9834878 aaattgttttcatataagctataagttgttttcataa 9834842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 255
Target Start/End: Complemental strand, 27728130 - 27728074
Alignment:
Q  199 aaaaaggataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 255  Q
    ||||| ||||||||||||| ||| | ||||||| |||| ||| ||||||||||||||    
T  27728130 aaaaaagataaaataaagtcaaactattttcatataaagtattagttgttttcataa 27728074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 185
Target Start/End: Complemental strand, 39392837 - 39392753
Alignment:
Q  102 aacttaattgagcacttatagcataaacgtctatcatttaagtgtttaagtataaacactttctat-acaaaagataaaataaag 185  Q
    ||||||||| |||| |||||||||||  |  |||||| ||||||  || ||||||||  ||||||| ||||||||||||||||||    
T  39392837 aacttaattaagcatttatagcataagtgcttatcatataagtggctatgtataaactatttctataacaaaagataaaataaag 39392753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 145
Target Start/End: Original strand, 4856 - 4909
Alignment:
Q  92 ttggacacacaacttaattgagcacttatagcataaacgtctatcatttaagtg 145  Q
    ||||||||||||||||||| ||| ||||||||||||| ||||||||| ||||||    
T  4856 ttggacacacaacttaattaagcgcttatagcataaatgtctatcatataagtg 4909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 207 - 255
Target Start/End: Complemental strand, 7218175 - 7218127
Alignment:
Q  207 taaaataaagttaaattgttttcatgtaaactataagttgttttcataa 255  Q
    ||||||||||| ||||||||||||| ||| |||||||||||||||||||    
T  7218175 taaaataaagtcaaattgttttcatataagctataagttgttttcataa 7218127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 207 - 255
Target Start/End: Complemental strand, 25006135 - 25006087
Alignment:
Q  207 taaaataaagttaaattgttttcatgtaaactataagttgttttcataa 255  Q
    ||||||||||| ||||||||||||| ||| |||||||||||||||||||    
T  25006135 taaaataaagtcaaattgttttcatataagctataagttgttttcataa 25006087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 207 - 286
Target Start/End: Original strand, 473133 - 473212
Alignment:
Q  207 taaaataaagttaaattgttttcatgtaaactataagttgttttcataaattgtctcggatcacttatgaaaatgagttg 286  Q
    ||||||||||||||||||||||| ||||  |||||||||||||| |||| || | | |||  |||||||||||| |||||    
T  473133 taaaataaagttaaattgttttcgtgtatgctataagttgtttttataagttctattggagaacttatgaaaataagttg 473212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 255
Target Start/End: Complemental strand, 40394985 - 40394938
Alignment:
Q  208 aaaataaagttaaattgttttcatgtaaactataagttgttttcataa 255  Q
    |||| ||||||||||||||||||| |||| ||||||||||||||||||    
T  40394985 aaaaaaaagttaaattgttttcatataaattataagttgttttcataa 40394938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 255
Target Start/End: Complemental strand, 10581184 - 10581130
Alignment:
Q  201 aaaggataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 255  Q
    ||||||||||||||||| ||| | ||||||| ||| |||||||||||||||||||    
T  10581184 aaaggataaaataaagtcaaacttttttcatttaagctataagttgttttcataa 10581130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 255
Target Start/End: Complemental strand, 27738283 - 27738233
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 255  Q
    ||||||||||||| ||||||||||||| ||| |||||| ||||||||||||    
T  27738283 gataaaataaagtcaaattgttttcatataagctataatttgttttcataa 27738233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 30371115 - 30371165
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 255  Q
    ||||||||||| | ||||||||||||| ||| |||||||||||||||||||    
T  30371115 gataaaataaactcaaattgttttcatataagctataagttgttttcataa 30371165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 145
Target Start/End: Complemental strand, 48133134 - 48133072
Alignment:
Q  83 agaccctgtttggacacacaacttaattgagcacttatagcataaacgtctatcatttaagtg 145  Q
    |||||||||||||| | ||||||||||| ||| |||||||||||||||  |||||| ||||||    
T  48133134 agaccctgtttggatagacaacttaattaagcgcttatagcataaacgcttatcatataagtg 48133072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 49517037 - 49517087
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 255  Q
    ||||||||||||| ||||||||||||| ||| ||||||| |||||||||||    
T  49517037 gataaaataaagtcaaattgttttcatttaagctataagctgttttcataa 49517087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 205 - 254
Target Start/End: Original strand, 49557108 - 49557157
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaactataagttgttttcata 254  Q
    |||||||||||||||||| || ||||| ||| ||||||||||||||||||    
T  49557108 gataaaataaagttaaatagtattcatttaagctataagttgttttcata 49557157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 255
Target Start/End: Complemental strand, 5592794 - 5592738
Alignment:
Q  199 aaaaaggataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 255  Q
    ||||| |||||||||||||  ||||||| |||| ||| |||||||||||||||||||    
T  5592794 aaaaaagataaaataaagtcgaattgttgtcatataagctataagttgttttcataa 5592738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 255
Target Start/End: Complemental strand, 37295815 - 37295771
Alignment:
Q  211 ataaagttaaattgttttcatgtaaactataagttgttttcataa 255  Q
    ||||||||||||||||||| | ||| |||||||||||||||||||    
T  37295815 ataaagttaaattgttttcgtttaagctataagttgttttcataa 37295771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 251
Target Start/End: Original strand, 52059856 - 52059900
Alignment:
Q  207 taaaataaagttaaattgttttcatgtaaactataagttgttttc 251  Q
    ||||||||| | ||||||||||||||||| |||||||||||||||    
T  52059856 taaaataaaatcaaattgttttcatgtaacctataagttgttttc 52059900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 208 - 255
Target Start/End: Original strand, 17269220 - 17269267
Alignment:
Q  208 aaaataaagttaaattgttttcatgtaaactataagttgttttcataa 255  Q
    |||||||||| ||||||||||||| ||| | |||||||||||||||||    
T  17269220 aaaataaagtcaaattgttttcatataagcaataagttgttttcataa 17269267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 205 - 280
Target Start/End: Complemental strand, 31517843 - 31517768
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataaattgtctcggatcacttatgaaaat 280  Q
    |||||||||||||||||||| |||||| ||| ||||||| ||| |||||||  ||||| |||   |||||||||||    
T  31517843 gataaaataaagttaaattgatttcatataagctataagctgtcttcataatctgtcttggagagcttatgaaaat 31517768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 200 - 255
Target Start/End: Original strand, 49888729 - 49888784
Alignment:
Q  200 aaaaggataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 255  Q
    |||| |||||||||||||| |||||||||| | ||| |||| ||||||||||||||    
T  49888729 aaaaagataaaataaagtttaattgttttcgtataagctattagttgttttcataa 49888784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 255
Target Start/End: Complemental strand, 5592065 - 5592019
Alignment:
Q  209 aaataaagttaaattgttttcatgtaaactataagttgttttcataa 255  Q
    |||||||| |||||||||||||||||||||||||   ||||||||||    
T  5592065 aaataaagctaaattgttttcatgtaaactataatacgttttcataa 5592019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 255
Target Start/End: Complemental strand, 28467410 - 28467360
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 255  Q
    ||||||||||||| ||||| ||||||| ||| ||| |||||||||||||||    
T  28467410 gataaaataaagtcaaattattttcatataagctacaagttgttttcataa 28467360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 36070217 - 36070267
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 255  Q
    ||||||||||||||||||||| |||   ||| |||||||||||||||||||    
T  36070217 gataaaataaagttaaattgtcttcggataagctataagttgttttcataa 36070267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 255
Target Start/End: Original strand, 9656618 - 9656667
Alignment:
Q  206 ataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 255  Q
    |||||||||||||||||| ||||||| ||| ||||||| ||| |||||||    
T  9656618 ataaaataaagttaaattattttcatataagctataagctgtgttcataa 9656667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 286
Target Start/End: Complemental strand, 24915154 - 24915073
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataaattgtctcggatcacttatgaaaatgagttg 286  Q
    ||||||||||||||||||||||||  | ||  ||||||| |||||||||||  ||||| |||  |||| ||||||| |||||    
T  24915154 gataaaataaagttaaattgtttttgtatatgctataagctgttttcataagctgtcttggagaacttgtgaaaataagttg 24915073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 256
Target Start/End: Original strand, 30257644 - 30257701
Alignment:
Q  199 aaaaaggataaaataaagttaaattgttttcatgtaaactataagttgttttcataaa 256  Q
    ||||| ||||||||||||| ||| ||||| ||| ||| || |||||||||||||||||    
T  30257644 aaaaaagataaaataaagtcaaactgtttccatataagctttaagttgttttcataaa 30257701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 251
Target Start/End: Complemental strand, 5756783 - 5756743
Alignment:
Q  211 ataaagttaaattgttttcatgtaaactataagttgttttc 251  Q
    ||||||||||| ||||||||| |||| ||||||||||||||    
T  5756783 ataaagttaaactgttttcatataaattataagttgttttc 5756743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 130
Target Start/End: Original strand, 26184641 - 26184677
Alignment:
Q  94 ggacacacaacttaattgagcacttatagcataaacg 130  Q
    ||||| ||||||||||||||| |||||||||||||||    
T  26184641 ggacaaacaacttaattgagcgcttatagcataaacg 26184677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 255
Target Start/End: Original strand, 34952184 - 34952232
Alignment:
Q  207 taaaataaagttaaattgttttcatgtaaactataagttgttttcataa 255  Q
    |||||||||||||||||||||||   ||| || ||||||||||||||||    
T  34952184 taaaataaagttaaattgttttcgaataagctgtaagttgttttcataa 34952232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 209 - 256
Target Start/End: Original strand, 25296955 - 25297002
Alignment:
Q  209 aaataaagttaaattgttttcatgtaaactataagttgttttcataaa 256  Q
    |||| |||||||||||||||||| ||||||||||| ||||||||||||    
T  25296955 aaattaagttaaattgttttcatataaactataagctgttttcataaa 25297002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 1417231 - 1417281
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 255  Q
    ||||||||||||| ||||||||||||| ||| | |||||||||||||||||    
T  1417231 gataaaataaagtcaaattgttttcatataagcaataagttgttttcataa 1417281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 255
Target Start/End: Complemental strand, 9527193 - 9527143
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 255  Q
    |||| |||||||| ||| ||||||||| |||||||||||||||||||||||    
T  9527193 gatataataaagtcaaactgttttcatataaactataagttgttttcataa 9527143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 206 - 255
Target Start/End: Complemental strand, 17989125 - 17989076
Alignment:
Q  206 ataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 255  Q
    |||||||||||| ||| ||||||||| |||||||||| ||||||||||||    
T  17989125 ataaaataaagtcaaactgttttcatataaactataatttgttttcataa 17989076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 206 - 267
Target Start/End: Original strand, 30496672 - 30496733
Alignment:
Q  206 ataaaataaagttaaattgttttcatgtaaactataagttgttttcataaattgtctcggat 267  Q
    |||||||||||| ||||||||||| | ||| ||||| |||||||||||||| |||| |||||    
T  30496672 ataaaataaagtcaaattgttttcgtataacctataggttgttttcataaactgtcccggat 30496733  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 205 - 256
Target Start/End: Complemental strand, 22296331 - 22296280
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataaa 256  Q
    ||||||||||||||||||| ||||| | ||| |||||| |||||||||||||    
T  22296331 gataaaataaagttaaattattttcctataacctataaattgttttcataaa 22296280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 205 - 280
Target Start/End: Complemental strand, 30456553 - 30456478
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataaattgtctcggatcacttatgaaaat 280  Q
    ||||||||||||| ||||||||||||| |||  ||||||| ||||||||||| | ||| |||   |||||||||||    
T  30456553 gataaaataaagtcaaattgttttcatataagttataagtggttttcataaactatcttggagagcttatgaaaat 30456478  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 205 - 280
Target Start/End: Complemental strand, 40689089 - 40689014
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataaattgtctcggatcacttatgaaaat 280  Q
    ||||||||||||||||||| ||||||| ||| ||||||| ||| |||||||  | ||  |||| ||||||||||||    
T  40689089 gataaaataaagttaaattattttcatataagctataagctgtgttcataagctatcctggataacttatgaaaat 40689014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 205 - 252
Target Start/End: Complemental strand, 45813283 - 45813236
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaactataagttgttttca 252  Q
    ||||||||||||| || |||||||||| ||| ||||||||||||||||    
T  45813283 gataaaataaagtcaacttgttttcatataatctataagttgttttca 45813236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 27548230 - 27548280
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 255  Q
    |||||||||||||  |||||||||||| ||| ||||||| |||||||||||    
T  27548230 gataaaataaagtctaattgttttcatttaagctataagctgttttcataa 27548280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 252
Target Start/End: Complemental strand, 28340498 - 28340452
Alignment:
Q  206 ataaaataaagttaaattgttttcatgtaaactataagttgttttca 252  Q
    |||||||||||| ||| |||||||||||||  |||||||||||||||    
T  28340498 ataaaataaagtcaaactgttttcatgtaagttataagttgttttca 28340452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 251
Target Start/End: Complemental strand, 45777274 - 45777228
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaactataagttgttttc 251  Q
    |||||||| |||| ||| ||||||||| |||||||||||||||||||    
T  45777274 gataaaattaagtcaaactgttttcatataaactataagttgttttc 45777228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 255
Target Start/End: Complemental strand, 47046215 - 47046161
Alignment:
Q  201 aaaggataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 255  Q
    ||||||||||||||||| ||||||||||||| ||| ||   ||||||||||||||    
T  47046215 aaaggataaaataaagtcaaattgttttcatataagctccgagttgttttcataa 47046161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 336 - 372
Target Start/End: Original strand, 19624282 - 19624319
Alignment:
Q  336 acaagtgcttatgtcaataga-aaactcaaataagtca 372  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  19624282 acaagtgcttatgtcaatagataaactcaaataagtca 19624319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 30180018 - 30180063
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaactataagttgtttt 250  Q
    ||||||||||||||||||||||||| | ||| ||||||| ||||||    
T  30180018 gataaaataaagttaaattgttttcgtataagctataagctgtttt 30180063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 13960884 - 13960928
Alignment:
Q  206 ataaaataaagttaaattgttttcatgtaaactataagttgtttt 250  Q
    |||||||||||||||||||||||  | ||| ||||||||||||||    
T  13960884 ataaaataaagttaaattgtttttgtataacctataagttgtttt 13960928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 252
Target Start/End: Original strand, 47177606 - 47177650
Alignment:
Q  208 aaaataaagttaaattgttttcatgtaaactataagttgttttca 252  Q
    |||| ||||||||||||||||||| ||| ||||||| ||||||||    
T  47177606 aaaacaaagttaaattgttttcatataagctataagctgttttca 47177650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 280
Target Start/End: Complemental strand, 9202851 - 9202776
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataaattgtctcggatcacttatgaaaat 280  Q
    ||||||||||||||||||||||||||| ||| | ||||| ||||||||||| || ||| | |  ||||||||||||    
T  9202851 gataaaataaagttaaattgttttcatataagcaataagctgttttcataagttatcttgaagaacttatgaaaat 9202776  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 256
Target Start/End: Original strand, 4855666 - 4855716
Alignment:
Q  206 ataaaataaagttaaattgttttcatgtaaactataagttgttttcataaa 256  Q
    ||||||||||||||||||||| |||| |||  |||||||||||||||||||    
T  4855666 ataaaataaagttaaattgttatcatataagttataagttgttttcataaa 4855716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 255
Target Start/End: Complemental strand, 12595843 - 12595793
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 255  Q
    ||||||||||||||||||||||||||| |||||||| || || ||||||||    
T  12595843 gataaaataaagttaaattgttttcatataaactatgagctggtttcataa 12595793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 205 - 286
Target Start/End: Original strand, 12425538 - 12425619
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataaattgtctcggatcacttatgaaaatgagttg 286  Q
    ||||||||||||||||||||||||| | ||| ||||||| |||||||| ||  | ||| |||  |||||||||||| |||||    
T  12425538 gataaaataaagttaaattgttttcgtataagctataagctgttttcacaagctatcttggagaacttatgaaaataagttg 12425619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 90 - 184
Target Start/End: Original strand, 26516180 - 26516275
Alignment:
Q  90 gtttggacacacaacttaattgagcacttatagcataaacgtctatcatttaagtgtttaagtataaacactttct-atacaaaagataaaataaa 184  Q
    ||||||| | ||||||||||| ||| |||||||||||| ||  |||||| |||||| ||| |||||| |  ||||| | |||||||||||||||||    
T  26516180 gtttggataaacaacttaattaagcgcttatagcataagcgcttatcatataagtgcttatgtataagctatttctaaaacaaaagataaaataaa 26516275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 208 - 255
Target Start/End: Complemental strand, 41957551 - 41957504
Alignment:
Q  208 aaaataaagttaaattgttttcatgtaaactataagttgttttcataa 255  Q
    ||||| ||||||||||||||||||||||  |||||| |||||||||||    
T  41957551 aaaatgaagttaaattgttttcatgtaagttataagctgttttcataa 41957504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 201 - 256
Target Start/End: Original strand, 42646878 - 42646933
Alignment:
Q  201 aaaggataaaataaagttaaattgttttcatgtaaactataagttgttttcataaa 256  Q
    |||||||||||| |||||||||||||||  | ||| ||||||| ||||||||||||    
T  42646878 aaaggataaaattaagttaaattgtttttgtttaagctataaggtgttttcataaa 42646933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 255
Target Start/End: Complemental strand, 10272534 - 10272484
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 255  Q
    |||||||| |||| ||||||||||| | ||| |||||||||||||||||||    
T  10272534 gataaaattaagtcaaattgttttcgtataagctataagttgttttcataa 10272484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 243
Target Start/End: Original strand, 10363717 - 10363755
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaactataag 243  Q
    ||||||||||||||||||||||||||||| ||| |||||    
T  10363717 gataaaataaagttaaattgttttcatgttaacaataag 10363755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 255
Target Start/End: Complemental strand, 32059692 - 32059642
Alignment:
Q  205 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 255  Q
    ||||||||||||| ||| ||||||||| ||| ||||||| |||||||||||    
T  32059692 gataaaataaagtcaaactgttttcatataagctataagctgttttcataa 32059642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 255
Target Start/End: Original strand, 34205202 - 34205256
Alignment:
Q  201 aaaggataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 255  Q
    |||||||||| |||||| ||||| |||| || ||| |||||||||||||||||||    
T  34205202 aaaggataaagtaaagtcaaattatttttatataagctataagttgttttcataa 34205256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 255
Target Start/End: Original strand, 41534410 - 41534458
Alignment:
Q  206 ataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 255  Q
    ||||||||||| |||||||||| |||| || |||||||||||||||||||    
T  41534410 ataaaataaagctaaattgttt-catggaagctataagttgttttcataa 41534458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 15905607 - 15905563
Alignment:
Q  206 ataaaataaagttaaattgttttcatgtaaactataagttgtttt 250  Q
    |||| ||||| | |||||||||| |||||||||||||||||||||    
T  15905607 ataatataaaatcaaattgtttttatgtaaactataagttgtttt 15905563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 185
Target Start/End: Complemental strand, 35135858 - 35135754
Alignment:
Q  82 tagaccctgtttggacacacaacttaattgagcacttatagcataaacgtctatcatttaagtgtttaagtataaacactttctat-acaaaagataaaa 180  Q
    ||||||||||| ||| | ||||||||||| | |||| |||||||||  |  || ||| |||||||||| ||||||    ||||||| |||||||||||||    
T  35135858 tagaccctgttgggataaacaacttaattcaacactcatagcataagtgcttaacatataagtgtttatgtataagatatttctataacaaaagataaaa 35135759  T
Q  181 taaag 185  Q
    |||||    
T  35135758 taaag 35135754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 117 - 181
Target Start/End: Original strand, 5928 - 5993
Alignment:
Q  117 ttatagcataaacgtctatcatttaagtgtttaagtataaacactttctat-acaaaagataaaat 181  Q
    ||||||||||||| | |||||| |||||||||| ||||||||| |||| || ||||||||||||||    
T  5928 ttatagcataaacatttatcatataagtgtttatgtataaacaatttcaataacaaaagataaaat 5993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 242
Target Start/End: Original strand, 51536 - 51572
Alignment:
Q  206 ataaaataaagttaaattgttttcatgtaaactataa 242  Q
    |||||||||||||||||||||||||| | ||||||||    
T  51536 ataaaataaagttaaattgttttcatatcaactataa 51572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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