View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5570_high_10 (Length: 361)
Name: NF5570_high_10
Description: NF5570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5570_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 20 - 282
Target Start/End: Original strand, 7370400 - 7370662
Alignment:
| Q |
20 |
caaagctatcaataattttgactcttcattcatttgaaattgaagctaaaaagaagaaaccatataagatgttgataaaataaactagaagttgcaacat |
119 |
Q |
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| T |
7370400 |
caaagctatcaataattttgactcttcattcatttgaaattgaagctaaaaagaagaaatcatataagatgttgataaaataaactagaagttgcaacat |
7370499 |
T |
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| Q |
120 |
ttcaaaagagaagnnnnnnnnnnnnccattaatgaaaggatgaagatgttgctagcttgagataactccgaagaaaactttggagacacttcactctatc |
219 |
Q |
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| T |
7370500 |
ttcaaaagagaagaaaaacaaaaaacgatcaatgaaaggatgaagatgttgctagcttgagataactccgaagaaaactttggagacacttcactctatc |
7370599 |
T |
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| Q |
220 |
ctccagaacttgacactttagtttaccctccacaatttgcatctcatctccggtagtttcaaa |
282 |
Q |
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| T |
7370600 |
ctccagaacttgacactttagtttaccctccacaatttgcatctcatctccggtagtttcaaa |
7370662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 40 - 129
Target Start/End: Original strand, 7322775 - 7322863
Alignment:
| Q |
40 |
actcttcattcatttgaaattgaagctaaaaagaagaaaccatataagatgttgataaaataaactagaagttgcaacatttcaaaagag |
129 |
Q |
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| T |
7322775 |
actcttcattcattttaaattgaagc-aaaaagaagcaaccatacaagacgataatcaagtaaactagaagttccaacatttcaaaagag |
7322863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 44 - 126
Target Start/End: Original strand, 7291202 - 7291285
Alignment:
| Q |
44 |
ttcattcatttgaaattgaagctaaaaagaagaaaccatataagatgttg--ataaaataaactagaagttgcaacatttcaaaa |
126 |
Q |
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| T |
7291202 |
ttcattcattttaaattgaag-taaaaagaagcgatcatataagatgatataatcaaataaaccagaagttgcaacatttcaaaa |
7291285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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