View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5570_high_11 (Length: 338)
Name: NF5570_high_11
Description: NF5570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5570_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 11 - 319
Target Start/End: Complemental strand, 5067002 - 5066693
Alignment:
| Q |
11 |
acatcatcaaagtgtgaatatgagaaactaatgttaattagacaaaacatttttgtaacaagattttctcagatgagttaaactaagtatgaggtaaaaa |
110 |
Q |
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| T |
5067002 |
acatcatgaaagtgtgaatatgagaaactaatgttaattagacaaaacatttttgtaacaagattttctcagatgagttaaactaagtatgaggtaaaaa |
5066903 |
T |
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| Q |
111 |
atattcattcatgtactttttggtaatttaccctattggttatgattgtaaca-nnnnnnnnggtatcactttttgtgtatggcaggtatgggaattttt |
209 |
Q |
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| T |
5066902 |
atattcattcatgtactttttggtaatttaccctattggttatgattgtaacatttttttttggtatcactttttgtgtatggcaggtatgggaattttt |
5066803 |
T |
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| Q |
210 |
tcaaatctcacatattaggatgtcctacaattgtatcaatggatccagaactaaatagatacatattgatgaatgaagcaaaagggtttgttccaggata |
309 |
Q |
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| T |
5066802 |
tcaaatctcacatattaggatgtcctacaattgtatcaatggatccagaactaaatagatacatattgatgaatgaagcaaaagggtttgttccaggata |
5066703 |
T |
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| Q |
310 |
ccctcaatcc |
319 |
Q |
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| T |
5066702 |
ccctcaatcc |
5066693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 189 - 318
Target Start/End: Complemental strand, 975683 - 975554
Alignment:
| Q |
189 |
atggcaggtatgggaattttttcaaatctcacatattaggatgtcctacaattgtatcaatggatccagaactaaatagatacatattgatgaatgaagc |
288 |
Q |
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| T |
975683 |
atggcaggtttggaagttttttcaaatcacacatacttggcagtcctacaattgtttcaatggatccagagcttaatagatacatattgttgaatgaatc |
975584 |
T |
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| Q |
289 |
aaaagggtttgttccaggataccctcaatc |
318 |
Q |
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| T |
975583 |
aaaaggtcttgttcctggataccctcaatc |
975554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 182 - 318
Target Start/End: Complemental strand, 5591025 - 5590889
Alignment:
| Q |
182 |
tttgtgtatggcaggtatgggaattttttcaaatctcacatattaggatgtcctacaattgtatcaatggatccagaactaaatagatacatattgatga |
281 |
Q |
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|||||| ||||||||| ||| | |||||||||||| || ||| | || || |||||||| || |||||||||||||| || |||||||||||||| |||| |
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| T |
5591025 |
tttgtgaatggcaggtttggaagttttttcaaatcacatatacttggctgccctacaatagtttcaatggatccagagcttaatagatacatattaatga |
5590926 |
T |
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| Q |
282 |
atgaagcaaaagggtttgttccaggataccctcaatc |
318 |
Q |
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| T |
5590925 |
atgaatcaaaaggtcttgttcctggataccctcaatc |
5590889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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