View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5570_high_15 (Length: 251)
Name: NF5570_high_15
Description: NF5570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5570_high_15 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 7785927 - 7785694
Alignment:
| Q |
19 |
aagatgctcaaaactcggcttcatgtggttcatcagaagaatcagtatctgcattcagaggttgcaaattcaacactggccttgccatcatctggtagct |
118 |
Q |
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| T |
7785927 |
aagatgctcaaaactcgg-ttcatgtggttcatcagaagaatcagtatctgcattcagaggttgcaaattcaacactggccttgccatcatctggtagct |
7785829 |
T |
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| Q |
119 |
acagttgttgtcatgtcataagaaataggagcatttgtacttggttattggattattgg--atgtgtaattggtttatttgctccaatctcctctttcac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
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| T |
7785828 |
acagttgttgtcatgtcataagaaataggagcatttgtacttagttattggattattggatatgtgtaattggtttatttactccaatctcctctttcac |
7785729 |
T |
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| Q |
217 |
ttgtatggattattatgaaaagtttttcttctatt |
251 |
Q |
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|||||||||||||||| |||||||||||||||||| |
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| T |
7785728 |
ttgtatggattattatcaaaagtttttcttctatt |
7785694 |
T |
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