View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5570_high_2 (Length: 447)
Name: NF5570_high_2
Description: NF5570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5570_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 6e-81; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 264 - 428
Target Start/End: Original strand, 612886 - 613050
Alignment:
| Q |
264 |
aataatatcaatgtatctgaaatttggcattgaagctgctttatggccaaataattttgaaacaaaaaacttcttccaaaataatagtgtaaacaagcaa |
363 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
612886 |
aataatatcaatgtatctgaaatttggcattgaaactgctttatggccaaataattttgaaacaaaaaacttcttccaaaataatagtgtaaacaagcaa |
612985 |
T |
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| Q |
364 |
tgacatcaatggtgtaaaaaattacataaccgaaatttggcaatgatattgctttatgatcgata |
428 |
Q |
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| T |
612986 |
tgacatcaatggtgtaaaaaattacataaccgaaatttggcaatgatattgttttatggtcgata |
613050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 122 - 240
Target Start/End: Original strand, 612743 - 612861
Alignment:
| Q |
122 |
gaaataaatttctcaccaaagcattctaacgacatgtggtttcatggactaaactcaagcttctcatgcatttccctataaatgctaacctaaattgaca |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
612743 |
gaaataaatttctcaccaaagcattctaacgacatgtggtttcatggactaaactcaagcttctcatgcatttccccataaatgctaacctaaattgaca |
612842 |
T |
|
| Q |
222 |
ttgaaattgtttttatgac |
240 |
Q |
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| T |
612843 |
ttgaaattgtttttatgac |
612861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 612622 - 612663
Alignment:
| Q |
1 |
tcccattcacataaacaaacttttagtatcaatggtcgaatc |
42 |
Q |
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| T |
612622 |
tcccattcacataaacaaactttgagtatcaatggtcgaatc |
612663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 137; Significance: 2e-71; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 268 - 428
Target Start/End: Complemental strand, 27202873 - 27202713
Alignment:
| Q |
268 |
atatcaatgtatctgaaatttggcattgaagctgctttatggccaaataattttgaaacaaaaaacttcttccaaaataatagtgtaaacaagcaatgac |
367 |
Q |
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||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
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| T |
27202873 |
atatcaatgtaactgaaatttggcattgaaactgctttatggccaaataattttgaaacataaaacttcttccaaaataatagtgtaaacaaacaatgac |
27202774 |
T |
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| Q |
368 |
atcaatggtgtaaaaaattacataaccgaaatttggcaatgatattgctttatgatcgata |
428 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
27202773 |
atcaatggtataaaaaattacataaccgaaatttggcaatgatattgctttatggtcgata |
27202713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 268 - 428
Target Start/End: Complemental strand, 27858020 - 27857860
Alignment:
| Q |
268 |
atatcaatgtatctgaaatttggcattgaagctgctttatggccaaataattttgaaacaaaaaacttcttccaaaataatagtgtaaacaagcaatgac |
367 |
Q |
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||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
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| T |
27858020 |
atatcaatgtaactgaaatttggcattgaaactgctttatggccaaataattttgaaacataaaacttcttccaaaataatagtgtaaacaaacaatgac |
27857921 |
T |
|
| Q |
368 |
atcaatggtgtaaaaaattacataaccgaaatttggcaatgatattgctttatgatcgata |
428 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
27857920 |
atcaatggtataaaaaattacataaccgaaatttggcaatgatattgctttatggtcgata |
27857860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 122 - 234
Target Start/End: Complemental strand, 27203013 - 27202901
Alignment:
| Q |
122 |
gaaataaatttctcaccaaagcattctaacgacatgtggtttcatggactaaactcaagcttctcatgcatttccctataaatgctaacctaaattgaca |
221 |
Q |
| |
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||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
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| T |
27203013 |
gaaataaatttttcaccaaagcattctaatgacatgtggtttcatggactaaactcaagcttctcatgcatttccccataaatgataacctaaattgaca |
27202914 |
T |
|
| Q |
222 |
ttgaaattgtttt |
234 |
Q |
| |
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||||||||||||| |
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|
| T |
27202913 |
ttgaaattgtttt |
27202901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 122 - 234
Target Start/End: Complemental strand, 27858160 - 27858048
Alignment:
| Q |
122 |
gaaataaatttctcaccaaagcattctaacgacatgtggtttcatggactaaactcaagcttctcatgcatttccctataaatgctaacctaaattgaca |
221 |
Q |
| |
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||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
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| T |
27858160 |
gaaataaatttttcaccaaagcattctaatgacatgtggtttcatggactaaactcaagcttctcatgcatttccccataaatgataacctaaattgaca |
27858061 |
T |
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| Q |
222 |
ttgaaattgtttt |
234 |
Q |
| |
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||||||||||||| |
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| T |
27858060 |
ttgaaattgtttt |
27858048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 15652340 - 15652376
Alignment:
| Q |
6 |
ttcacataaacaaacttttagtatcaatggtcgaatc |
42 |
Q |
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|||||||||||||||||| |||||||||||||||||| |
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| T |
15652340 |
ttcacataaacaaactttgagtatcaatggtcgaatc |
15652376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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