View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5570_high_20 (Length: 245)

Name: NF5570_high_20
Description: NF5570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5570_high_20
NF5570_high_20
[»] chr3 (2 HSPs)
chr3 (13-226)||(52688839-52689052)
chr3 (114-203)||(44790919-44791008)
[»] chr7 (1 HSPs)
chr7 (114-220)||(21237075-21237181)
[»] chr1 (1 HSPs)
chr1 (114-226)||(49382849-49382961)
[»] chr4 (2 HSPs)
chr4 (167-226)||(46251436-46251495)
chr4 (166-226)||(18903257-18903317)
[»] chr8 (2 HSPs)
chr8 (115-184)||(17071729-17071797)
chr8 (115-184)||(17576476-17576544)


Alignment Details
Target: chr3 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 13 - 226
Target Start/End: Original strand, 52688839 - 52689052
Alignment:
Q  13 aatatgggttgtgatcatgatcctattttgttgttttacgagcgacgtcctactcaagttcactctgtgcatgaggttgatttgttgagagttgccacca 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||| |    
T  52688839 aatatgggttgtgatcatgatcctattttgttgttttacgagcgacgtcctactcaagttcactttgtgcatgaagttaatttgttgagagttgccacta 52688938  T
Q  113 tggatgtcaatggatatccatgggtacattatagtatgatacctatcccgccacgttggataaatatgatacatgtgcctgccccgtacccatttgggta 212  Q
     |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| | ||||||    
T  52688939 gggatgtcaatggatatccatggatacattatagtatgatacctatcccgccacgttggataaatatgatacatgtgtctgccccatacccgtgtgggta 52689038  T
Q  213 ccgactatacgggt 226  Q
    ||||||||||||||    
T  52689039 ccgactatacgggt 52689052  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 203
Target Start/End: Original strand, 44790919 - 44791008
Alignment:
Q  114 ggatgtcaatggatatccatgggtacattatagtatgatacctatccc-gccacgttggataaatatgatacatgtgcctgccccgtaccc 203  Q
    |||||||||||| || ||||||||||   |||||||||||||  |||| ||| ||||| ||||| |||||||||||| | |||||||||||    
T  44790919 ggatgtcaatgggtacccatgggtacgg-atagtatgatacccgtccccgccccgttgtataaaaatgatacatgtgtccgccccgtaccc 44791008  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 220
Target Start/End: Complemental strand, 21237181 - 21237075
Alignment:
Q  114 ggatgtcaatggatatccatgggtacattatagtatgatacctatccc-gccacgttggataaatatgatacatgtgcctgccccgtacccatttgggta 212  Q
    |||||||||||| || ||||||||||   ||||||||||||| ||||| | | |||||||||||||||||||  ||||| |||||||||||   ||||||    
T  21237181 ggatgtcaatgggtacccatgggtacgg-atagtatgatacccatccccgtcccgttggataaatatgatacccgtgcccgccccgtaccctcgtgggta 21237083  T
Q  213 ccgactat 220  Q
    || |||||    
T  21237082 cccactat 21237075  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 226
Target Start/End: Complemental strand, 49382961 - 49382849
Alignment:
Q  114 ggatgtcaatggatatccatgggtacattatagtatgatacctatccc-gccacgttggataaatatgatacatgtgcctgccccgtacccatttgggta 212  Q
    |||| ||||||  ||||||||||||||| ||||||||||||    ||| ||| |||| ||||||||||||||| ||| |||||||||||   | ||||||    
T  49382961 ggatatcaatgagtatccatgggtacat-atagtatgatactcgcccctgccccgttagataaatatgatacacgtgtctgccccgtacttgtgtgggta 49382863  T
Q  213 ccgactatacgggt 226  Q
    || |||||||||||    
T  49382862 cccactatacgggt 49382849  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 226
Target Start/End: Original strand, 46251436 - 46251495
Alignment:
Q  167 gttggataaatatgatacatgtgcctgccccgtacccatttgggtaccgactatacgggt 226  Q
    ||||||||||||||||||| ||||| ||| ||||||| | |||||||| ||||| |||||    
T  46251436 gttggataaatatgatacacgtgcccgcctcgtacccttgtgggtacccactatgcgggt 46251495  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 18903317 - 18903257
Alignment:
Q  166 cgttggataaatatgatacatgtgcctgccccgtacccatttgggtaccgactatacgggt 226  Q
    |||| |||||||| |||||| ||||| |||||||||||   |||||||| |||||||||||    
T  18903317 cgttagataaatacgatacacgtgcccgccccgtacccgcgtgggtacccactatacgggt 18903257  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 184
Target Start/End: Complemental strand, 17071797 - 17071729
Alignment:
Q  115 gatgtcaatggatatccatgggtacattatagtatgatacctatcccgccacgttggataaatatgatac 184  Q
    ||||||||||||||||||||||||||  | |||||||||||  ||||  | | |||||||||||||||||    
T  17071797 gatgtcaatggatatccatgggtaca-gagagtatgataccgttcccatcccattggataaatatgatac 17071729  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 184
Target Start/End: Original strand, 17576476 - 17576544
Alignment:
Q  115 gatgtcaatggatatccatgggtacattatagtatgatacctatcccgccacgttggataaatatgatac 184  Q
    ||||||||||||||||||||||||||  | |||||||||||  ||||  | | |||||||||||||||||    
T  17576476 gatgtcaatggatatccatgggtaca-gagagtatgataccgttcccatcccattggataaatatgatac 17576544  T

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