View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5570_high_3 (Length: 422)
Name: NF5570_high_3
Description: NF5570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5570_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 22 - 408
Target Start/End: Original strand, 7106253 - 7106639
Alignment:
| Q |
22 |
atgccgccttcttcttctgcatcatcgaagaagggtaaaaggtctgattttgagaagaaactttgtgagtttttcaaaaaccagattgagtcggatacct |
121 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
7106253 |
atgccgccttcttcttctgcatcatcgaagaagggtaaaaggtctgattttgagaagaaactttgcgagtttttcaaaaaccagattgagtcggatacct |
7106352 |
T |
|
| Q |
122 |
caccagcctatggagatggattcagatcgggttaccaggcggtacttaagtatgggcttgaaagcacccttgatcatatccatttgaccggaacttttcc |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
7106353 |
caccagcctatggagatggattcagatcgggttaccaggcggtacttaagtatgggctcgaaagcacccttgatcatatccatttgaccggaacttttcc |
7106452 |
T |
|
| Q |
222 |
atgttgaaaatttgaaagttagcataactttttcgcccatatgaaccaatgcctcatcttggtcgggagtgttacctgtctagcccttccatttcctcga |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
7106453 |
atgttgaaaatttgaaagttagcataactttttcgcccatatgaaccaatgcctcatcttggtcgggagtgttacctgtctagcccttccgtttcctcga |
7106552 |
T |
|
| Q |
322 |
atcaaatatcagtcgtcggattaatctgatggttgatagtgttggtctctcggtgatcagattaattcaacaactgagttattgttg |
408 |
Q |
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| T |
7106553 |
atcaaatatcagtcgtcggattaatctgatggttgatagtgttggtctctcggtgatcagattaattcaacaactgagttattgttg |
7106639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 37 - 408
Target Start/End: Original strand, 7094051 - 7094417
Alignment:
| Q |
37 |
tctgcatcatcgaagaagggtaaaaggtctgattttgagaagaaactttgtgagtttttcaaaaaccagattgagtcggatacctcaccagcctatggag |
136 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
7094051 |
tctgcatcatcgaagaagggtaaacggtctgattttgagaagaaacttggcgagtttttcaaaaaccagattgagtcagatacctcaccagcctatggag |
7094150 |
T |
|
| Q |
137 |
atggattcagatcgggttaccaggcggtacttaagtatgggcttgaaagcacccttgatcatatccatttgaccggaacttttccatgttgaaaatttga |
236 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7094151 |
atggattcagatcgggttaccaggcggtacttaagtatgggctcaaaagtacccttgatcatatccatttgaccggaacttttccatgttgaaaatttga |
7094250 |
T |
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| Q |
237 |
aagttagcataactttttcgcccatatgaaccaatgcctcatcttggtcgggagtgttacctgtctagcccttccatttcctcgaatcaaatatcagtcg |
336 |
Q |
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||| |||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||| |||| ||||||||||| |
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| T |
7094251 |
aagctagcataattttttcgcccatatgaaccaatgcctcatcatggtccggagtgttacctgtctagcc---------cctccaatcgaatatcagtcg |
7094341 |
T |
|
| Q |
337 |
tcggattaatctgatgg----ttgatagtgttggtctctcggtgatcagattaattcaacaactgagttattgttg |
408 |
Q |
| |
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|||||||||| |||||| |||||||| ||||||||| |||||| ||||||||||||| |||||||| |||||| |
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| T |
7094342 |
tcggattaatatgatggttgattgatagtattggtctcttggtgattagattaattcaacgactgagtttttgttg |
7094417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 32 - 180
Target Start/End: Complemental strand, 33406065 - 33405917
Alignment:
| Q |
32 |
cttcttctgcatcatcgaagaagggtaaaaggtctgattttgagaagaaactttgtgagtttttcaaaaaccagattgagtcggatacctcaccagccta |
131 |
Q |
| |
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|||| ||| |||| || |||||||||||| |||| |||||||||||| ||||| || | ||||| ||| ||||||||||| | |||| |||||||||||| |
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| T |
33406065 |
cttcctctacatcttcaaagaagggtaaacggtccgattttgagaaggaacttggtaaattttttaaacaccagattgagaccgatagctcaccagccta |
33405966 |
T |
|
| Q |
132 |
tggagatggattcagatcgggttaccaggcggtacttaagtatgggctt |
180 |
Q |
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|||||||||||| ||| |||| ||||||| || || |||||||||||| |
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| T |
33405965 |
tggagatggatttagagagggtaaccaggcagtgctcaagtatgggctt |
33405917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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