View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5570_high_4 (Length: 413)
Name: NF5570_high_4
Description: NF5570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5570_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 20 - 401
Target Start/End: Complemental strand, 969014 - 968631
Alignment:
| Q |
20 |
tttaactcacaataattaaacacatactactacaattttaggcttgaaaatgaaaacagtgagatttgtagaagacgacaacctaatctataaacaaaat |
119 |
Q |
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|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
969014 |
tttaactcacaataatcaaacacatactactactattttaggcttgaaaatgaaaacagtgagatttgtagaagacgacaacctaatctataaactaaat |
968915 |
T |
|
| Q |
120 |
tagcgtacctacagaaacttcctccagaaacgtgcatgaatcaatacatata--tatacaccctnnnnnnnnnnnnttcgtatcgattcctttggcatat |
217 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||| |
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| T |
968914 |
tagcgtacctacagaaacttcctccagaaacgtacatgaatcaatacatatatatatacaccctaaaaattaaaaattcgtatcgattcctttggcatat |
968815 |
T |
|
| Q |
218 |
actcttgaaaatgaatatatatttgatggannnnnnnnnnnnnatatatccttcctgacacaaggaaacacattatccctttgttgtctgttacaaacaa |
317 |
Q |
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|||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
968814 |
actcttgaaaattaatatatatttgatggatttttatttttttatatatccttcctgacacaaggaaacatattatccctttgttgtctgttacaaacaa |
968715 |
T |
|
| Q |
318 |
ttgacaccaaccctgcaccatccttgatatttgatcttccacccatattttattttttaattcaagacttttggcctatatatt |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
968714 |
ttgacaccaaccctgcaccatccttgatatttgatcttccacccatattttattttttaattcaagacttttggcctatatatt |
968631 |
T |
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