View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5570_high_8 (Length: 368)
Name: NF5570_high_8
Description: NF5570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5570_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 6299569 - 6299222
Alignment:
| Q |
1 |
ccaagtcccataaacttttagtatttttgtttacagatgaaaaatttgatggaacgaagaatgaagacattgtgatgtctcctatgtcaaaaattgataa |
100 |
Q |
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| T |
6299569 |
ccaagtcccataaacttttagtatttttgtttacagatgaaaaatttgatggaacaaagaatgaggacactgtgatgtctcctatgtcaaaaattgataa |
6299470 |
T |
|
| Q |
101 |
aggtacccaaatgagctctccagagactgaaaatgaagaccattcatctccaaaatcttcatccccaattttggccatgaatccaaaaagttgccattca |
200 |
Q |
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| T |
6299469 |
aggtacccaaatgagctctccagagactgaaaatgaagaccattcatctccaaaatcttcatccccaattttggccatgaatccaaaaagttgccattca |
6299370 |
T |
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| Q |
201 |
gaaaagttagagatcaaagatgtgcagatagactgtcaggctaatgttattaattggtctaagagttatgcatccaagctaagctctttcaatggtaagg |
300 |
Q |
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| T |
6299369 |
gaaaagttagagatcaaagatgtgcaggtagactgtcaggctaatgttattaagtggtctaagagttatgcatccaagctaagctctttcaatggtaaag |
6299270 |
T |
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| Q |
301 |
agttaaagaaaagtggtacagaagcttcaggtttggatattgcagaga |
348 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6299269 |
agttaaagaaaagtggtacagaagcttcaggtttggatattgcagaga |
6299222 |
T |
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