View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5570_low_1 (Length: 791)
Name: NF5570_low_1
Description: NF5570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5570_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Original strand, 50897644 - 50898048
Alignment:
| Q |
1 |
aactctatttagattgtgcagcggatagtgtgtagagaaaattagagaattacatatttaatattaaaacacttaactaaatagttgtgtatatccacgg |
100 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
50897644 |
aactctatttagattgtgcagctgatagtgtgtagagaaaattagagaattacatatttaatcttaaaacacttaactaaatagttgtgtatatccacgg |
50897743 |
T |
|
| Q |
101 |
tagccttcgaacattcgttaaggtcactgtaacaggccaatcaatggtggtagcttaactcctagtctcctctaatgagattgagcagccaccgaacaaa |
200 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
50897744 |
tagccttcgaacattcgttaaggtcactgtagcaggccaatcaatggtggtagcttaactcctagtctcctctaatgagattgagcagccacctaacaaa |
50897843 |
T |
|
| Q |
201 |
attgaagatgttggaagttttatatccaaaagttattcattgtttgtgcaaccaaggtgaataagccaagaatttgagttctaaggtgaataaatgagga |
300 |
Q |
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| T |
50897844 |
attgaagatgttggaagttttatatccaaaagttattcattgtttgtgcaaccaaggtgaataagccaagaatttgagttctaaggtgaataaatgagga |
50897943 |
T |
|
| Q |
301 |
atttaagttcgaatactaacccttgtagtatgtagacgtaatacaatgttcttgtcggttgaactatgtttacatgactctattgattatgttatgttta |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50897944 |
atttaagttcgaatactaacccttgtagtatgtagacgtaatacaatgttcttgtcggttgaactatgtttacatgactctattgattatgttatgttta |
50898043 |
T |
|
| Q |
401 |
catga |
405 |
Q |
| |
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||||| |
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| T |
50898044 |
catga |
50898048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 478 - 772
Target Start/End: Original strand, 50898121 - 50898415
Alignment:
| Q |
478 |
gataatgttaagtgatgaatcatactttaacaacctcgctcggtctcaaatctttaggaatgatttagaacgacaacgtaatctccagctttatgcaaca |
577 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50898121 |
gataatgttaagtgatgaatcatactttaacaacctcgctcggtctcaaatctttaggaatgatttagaacgacaacgtaatctccagctttatgcaaca |
50898220 |
T |
|
| Q |
578 |
tgagaatctatggctctaaataatcacatggcattgtagaatagagacacgcctcagaaaaagggaggattataagagcttgacaccaataaaaaacatg |
677 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50898221 |
tgagaatctatggctctaaataatcacatggcattgtagaatagagacacgcctcagaaaaagggaggattataagagcttgacaccaataaaaaacatg |
50898320 |
T |
|
| Q |
678 |
caagaggagaagcataaacgcatggcgaactttgctttggagccgacaatttactcggtaacctgattattcaaaaagcttccattcctccgtct |
772 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50898321 |
caagaggagaagcataaacgcatggcgaactttgctttggagccgacaatttactcggtaacctgattattcaaaaagcttccattcctccgtct |
50898415 |
T |
|
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