View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5570_low_18 (Length: 251)
Name: NF5570_low_18
Description: NF5570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5570_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 44903783 - 44903553
Alignment:
| Q |
1 |
aaaggttgtaggaaaagcacaaggattcataatccctgtggaacagtttcagcaatcagaattcaatgttttgtatctcacttttgatacaccagatcat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44903783 |
aaaggttgtaggaaaagcacaaggattcataatccctgtggaacagtttcagcaatcagaattcaatgttttgtatctcacttttgatacaccagatcat |
44903684 |
T |
|
| Q |
101 |
tcaggtagtttgagtgtgcaagcaatcaaagttgctcatgaggaaagagaagaattcagagtggtaggaggaacaggttcgtttgcatttgttcatggtg |
200 |
Q |
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|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
44903683 |
tcaggtagcttgagtgtgcaagcaatcaaagttgctcataaggaaagagaagaattcagagtggtaggaggaacaggttcgtttgcatttgctcatggtg |
44903584 |
T |
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| Q |
201 |
ttgcagtttttactcaaacagatgaacagac |
231 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
44903583 |
ttgcagtttttactcaaacagatgaacagac |
44903553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 44917255 - 44917025
Alignment:
| Q |
1 |
aaaggttgtaggaaaagcacaaggattcataatccctgtggaacagtttcagcaatcagaattcaatgttttgtatctcacttttgatacaccagatcat |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44917255 |
aaaggttgtaggaaaagcacaaggattcataatccctgtggaacagtttcagcaatcagaattcaatgttttgtatctcacttttgatacaccagatcat |
44917156 |
T |
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| Q |
101 |
tcaggtagtttgagtgtgcaagcaatcaaagttgctcatgaggaaagagaagaattcagagtggtaggaggaacaggttcgtttgcatttgttcatggtg |
200 |
Q |
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|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
44917155 |
tcaggtagcttgagtgtgcaagcaatcaaagttgctcataaggaaagagaagaattcagagtggtaggaggaacaggttcgtttgcatttgctcatggtg |
44917056 |
T |
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| Q |
201 |
ttgcagtttttactcaaacagatgaacagac |
231 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
44917055 |
ttgcagtttttactcaaacagatgaacagac |
44917025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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