View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5570_low_20 (Length: 246)

Name: NF5570_low_20
Description: NF5570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5570_low_20
NF5570_low_20
[»] chr3 (6 HSPs)
chr3 (18-246)||(40320987-40321213)
chr3 (146-212)||(27792798-27792865)
chr3 (172-234)||(43116532-43116594)
chr3 (42-94)||(44560103-44560155)
chr3 (146-212)||(33307657-33307724)
chr3 (172-221)||(41028955-41029004)
[»] chr5 (6 HSPs)
chr5 (136-215)||(7096194-7096274)
chr5 (146-222)||(34690790-34690867)
chr5 (146-229)||(37063151-37063235)
chr5 (173-235)||(20982240-20982302)
chr5 (146-210)||(35135739-35135804)
chr5 (111-139)||(8334604-8334632)
[»] chr8 (8 HSPs)
chr8 (146-232)||(3645893-3645980)
chr8 (32-94)||(14354621-14354683)
chr8 (42-94)||(8173039-8173091)
chr8 (172-225)||(8629022-8629075)
chr8 (175-212)||(12972782-12972819)
chr8 (174-235)||(43208239-43208300)
chr8 (183-235)||(6918934-6918986)
chr8 (172-212)||(35298582-35298622)
[»] chr1 (2 HSPs)
chr1 (146-212)||(45107549-45107615)
chr1 (17-68)||(2774200-2774251)
[»] chr2 (8 HSPs)
chr2 (146-222)||(14209193-14209270)
chr2 (146-212)||(17952778-17952845)
chr2 (150-212)||(11488202-11488264)
chr2 (158-235)||(28803595-28803673)
chr2 (111-140)||(15978017-15978046)
chr2 (26-66)||(3841185-3841225)
chr2 (111-139)||(35993389-35993417)
chr2 (111-139)||(36236451-36236479)
[»] scaffold0590 (1 HSPs)
scaffold0590 (146-229)||(1151-1235)
[»] scaffold0275 (1 HSPs)
scaffold0275 (146-229)||(2740-2824)
[»] chr6 (9 HSPs)
chr6 (172-240)||(29249372-29249440)
chr6 (181-229)||(32386212-32386260)
chr6 (158-217)||(8010278-8010337)
chr6 (146-212)||(10452437-10452504)
chr6 (158-211)||(4248885-4248939)
chr6 (153-229)||(2514611-2514688)
chr6 (172-229)||(32386667-32386724)
chr6 (172-212)||(28130029-28130069)
chr6 (172-212)||(31668789-31668829)
[»] chr4 (7 HSPs)
chr4 (147-211)||(47970245-47970310)
chr4 (171-222)||(2980574-2980625)
chr4 (146-212)||(54325114-54325181)
chr4 (146-211)||(32724046-32724112)
chr4 (158-231)||(54986329-54986402)
chr4 (172-212)||(4191665-4191705)
chr4 (172-212)||(41241648-41241688)
[»] chr7 (4 HSPs)
chr7 (149-235)||(47003990-47004077)
chr7 (139-212)||(7244628-7244702)
chr7 (169-222)||(45078209-45078262)
chr7 (173-229)||(27481399-27481455)
[»] scaffold0455 (1 HSPs)
scaffold0455 (172-212)||(8616-8656)


Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 18 - 246
Target Start/End: Original strand, 40320987 - 40321213
Alignment:
Q  18 aaaatgacgattatcaaatgagtattttttagtcatatgagcttattagctataagttagcttattgtgcttgccaagcggaccttacatgtgcataaat 117  Q
    ||||||| ||||||||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  40320987 aaaatgatgattatcaaatgagtctttt--agtcatatgagcttattagctataagttagcttattgtgcttgccaagcggaccttacatgtgcataagt 40321084  T
Q  118 tgttttcagcttattttcataatagctcatgaaaatagtgtgactttattatatttttgttattgaaatagcttagacacaagcacttatatgattaaca 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40321085 tgttttcagcttattttcataatagctcatgaaaatagtgtgactttattatatttttgttattgaaatagcttagacacaagcacttatatgattaaca 40321184  T
Q  218 tttatactataaacacttggttatgttgt 246  Q
    |||||||||||||||||||||||||||||    
T  40321185 tttatactataaacacttggttatgttgt 40321213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 212
Target Start/End: Complemental strand, 27792865 - 27792798
Alignment:
Q  146 atgaaaatagtgtgactttattatat-ttttgttattgaaatagcttagacacaagcacttatatgat 212  Q
    ||||||||||| |||| ||||| ||| ||||||| ||||||||||||| ||| |||||||||||||||    
T  27792865 atgaaaatagtttgaccttattttatcttttgtttttgaaatagcttatacataagcacttatatgat 27792798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 172 - 234
Target Start/End: Original strand, 43116532 - 43116594
Alignment:
Q  172 ttttgttattgaaatagcttagacacaagcacttatatgattaacatttatactataaacact 234  Q
    ||||||||| ||||||||||| ||| || ||||| |||||| ||||||||| |||||||||||    
T  43116532 ttttgttatagaaatagcttacacataaacacttgtatgataaacatttatgctataaacact 43116594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 94
Target Start/End: Complemental strand, 44560155 - 44560103
Alignment:
Q  42 ttttttagtcatatgagcttattagctataagttagcttattgtgcttgccaa 94  Q
    |||||||||||||||| ||||| || |||||| |||||||| |||||||||||    
T  44560155 ttttttagtcatatgaacttataagttataagctagcttatcgtgcttgccaa 44560103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 212
Target Start/End: Original strand, 33307657 - 33307724
Alignment:
Q  146 atgaaaatagtgtgactttattatat-ttttgttattgaaatagcttagacacaagcacttatatgat 212  Q
    ||||||||| | ||||||||||  || |||||||| |||||||||||| ||| |||||||||||||||    
T  33307657 atgaaaataatttgactttatttcatattttgttactgaaatagcttatacataagcacttatatgat 33307724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 221
Target Start/End: Original strand, 41028955 - 41029004
Alignment:
Q  172 ttttgttattgaaatagcttagacacaagcacttatatgattaacattta 221  Q
    ||||||||| ||||||||||| ||| ||||||||||||||| | ||||||    
T  41028955 ttttgttatagaaatagcttatacataagcacttatatgataagcattta 41029004  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 136 - 215
Target Start/End: Original strand, 7096194 - 7096274
Alignment:
Q  136 ataatagctcatgaaaatagtgtgactttattatat-ttttgttattgaaatagcttagacacaagcacttatatgattaa 215  Q
    ||||||||| |||||||| || |||||||||| ||| ||||||||| ||||||||||| ||| |||||||| |||||||||    
T  7096194 ataatagcttatgaaaatggtttgactttattttatcttttgttatagaaatagcttatacataagcacttgtatgattaa 7096274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 222
Target Start/End: Complemental strand, 34690867 - 34690790
Alignment:
Q  146 atgaaaatagtgtgactttattatat-ttttgttattgaaatagcttagacacaagcacttatatgattaacatttat 222  Q
    |||||| || |||||||||||| ||| ||||||||| |||||||| || ||| ||| ||||| |||||||||||||||    
T  34690867 atgaaagtattgtgactttattttatcttttgttatagaaatagcgtatacataaggacttaaatgattaacatttat 34690790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 229
Target Start/End: Original strand, 37063151 - 37063235
Alignment:
Q  146 atgaaaatagtgtgactttattatat-ttttgttattgaaatagcttagacacaagcacttatatgattaacatttatactataa 229  Q
    ||||||||||| |||||||||| ||| ||||||||| ||||||| ||| ||| ||||| ||||||||  | ||||||| ||||||    
T  37063151 atgaaaatagtttgactttattttatcttttgttatagaaatagtttatacataagcatttatatgacaagcatttatgctataa 37063235  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 235
Target Start/End: Original strand, 20982240 - 20982302
Alignment:
Q  173 tttgttattgaaatagcttagacacaagcacttatatgattaacatttatactataaacactt 235  Q
    |||||||| ||||||||||| ||| ||||||||||||||| | || |||| |||||| |||||    
T  20982240 tttgttatagaaatagcttatacataagcacttatatgataagcacttatgctataagcactt 20982302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 210
Target Start/End: Original strand, 35135739 - 35135804
Alignment:
Q  146 atgaaaatagtgtgactttattatat-ttttgttattgaaatagcttagacacaagcacttatatg 210  Q
    ||||||||||| |||||||||| ||| ||||||||| |||||| |||| ||| || ||||||||||    
T  35135739 atgaaaatagtttgactttattttatcttttgttatagaaatatcttatacataaacacttatatg 35135804  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 139
Target Start/End: Complemental strand, 8334632 - 8334604
Alignment:
Q  111 cataaattgttttcagcttattttcataa 139  Q
    |||||||||||||||||||||||||||||    
T  8334632 cataaattgttttcagcttattttcataa 8334604  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 146 - 232
Target Start/End: Original strand, 3645893 - 3645980
Alignment:
Q  146 atgaaaatagtgtgactttattatat-ttttgttattgaaatagcttagacacaagcacttatatgattaacatttatactataaaca 232  Q
    ||||||||||| ||| ||| || ||| |||| |||| ||||||||||| ||||||||||||||||||| |||| |||| |||||||||    
T  3645893 atgaaaatagtttgattttgttttatattttcttatagaaatagcttatacacaagcacttatatgataaacacttatgctataaaca 3645980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 94
Target Start/End: Original strand, 14354621 - 14354683
Alignment:
Q  32 caaatgagtattttttagtcatatgagcttattagctataagttagcttattgtgcttgccaa 94  Q
    |||||| || |||||||||||||||||||||| | ||||||| || |||||||||||||||||    
T  14354621 caaatgggtcttttttagtcatatgagcttataaactataaggtaacttattgtgcttgccaa 14354683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 42 - 94
Target Start/End: Original strand, 8173039 - 8173091
Alignment:
Q  42 ttttttagtcatatgagcttattagctataagttagcttattgtgcttgccaa 94  Q
    |||||||||||||||||||||| | ||||||| ||||||| ||||||||||||    
T  8173039 ttttttagtcatatgagcttataaactataaggtagcttagtgtgcttgccaa 8173091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 8629075 - 8629022
Alignment:
Q  172 ttttgttattgaaatagcttagacacaagcacttatatgattaacatttatact 225  Q
    ||||||||| ||||||||||| | | ||||||||||||||| |||| |||||||    
T  8629075 ttttgttatagaaatagcttataaataagcacttatatgataaacacttatact 8629022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 12972819 - 12972782
Alignment:
Q  175 tgttattgaaatagcttagacacaagcacttatatgat 212  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  12972819 tgttattgaaatagcttatacataagcacttatatgat 12972782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 235
Target Start/End: Original strand, 43208239 - 43208300
Alignment:
Q  174 ttgttattgaaatagcttagacacaagcacttatatgattaacatttatactataaacactt 235  Q
    ||||||| ||||||||||| ||| ||  ||||||||||| ||| |||||||||||| |||||    
T  43208239 ttgttatagaaatagcttatacataaatacttatatgatgaacgtttatactataagcactt 43208300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 235
Target Start/End: Complemental strand, 6918986 - 6918934
Alignment:
Q  183 aaatagcttagacacaagcacttatatgattaacatttatactataaacactt 235  Q
    |||||||||| ||| ||||||||||||||| |||| |||| ||||| ||||||    
T  6918986 aaatagcttatacataagcacttatatgataaacacttatgctatagacactt 6918934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 212
Target Start/End: Original strand, 35298582 - 35298622
Alignment:
Q  172 ttttgttattgaaatagcttagacacaagcacttatatgat 212  Q
    |||||||| |||||||||||| ||| |||||||||||||||    
T  35298582 ttttgttactgaaatagcttatacataagcacttatatgat 35298622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 146 - 212
Target Start/End: Complemental strand, 45107615 - 45107549
Alignment:
Q  146 atgaaaatagtgtgactttattatatttttgttattgaaatagcttagacacaagcacttatatgat 212  Q
    ||||||||||| |||||||||| ||||||| |||| ||||||||||| | | |||||||||||||||    
T  45107615 atgaaaatagtttgactttattttatttttcttatagaaatagcttatagataagcacttatatgat 45107549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 2774251 - 2774200
Alignment:
Q  17 aaaaatgacgattatcaaatgagtattttttagtcatatgagcttattagct 68  Q
    ||||| |||| ||| ||||||||| |||||||||||||||||||||| ||||    
T  2774251 aaaaaagacggttaccaaatgagtcttttttagtcatatgagcttataagct 2774200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 222
Target Start/End: Complemental strand, 14209270 - 14209193
Alignment:
Q  146 atgaaaatagtgtgactttattatat-ttttgttattgaaatagcttagacacaagcacttatatgattaacatttat 222  Q
    ||||||| ||| ||| |||||| ||| ||||||||||||||||||||||||| || |||||||||||| ||| |||||    
T  14209270 atgaaaacagtttgaatttattttatcttttgttattgaaatagcttagacagaaacacttatatgataaacgtttat 14209193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 212
Target Start/End: Original strand, 17952778 - 17952845
Alignment:
Q  146 atgaaaatagtgtgactttattatat-ttttgttattgaaatagcttagacacaagcacttatatgat 212  Q
    ||||||||||| |||||||||| ||| ||||||||| ||||||||||| | | |||| ||||||||||    
T  17952778 atgaaaatagtttgactttattttatcttttgttatagaaatagcttatatataagctcttatatgat 17952845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 212
Target Start/End: Complemental strand, 11488264 - 11488202
Alignment:
Q  150 aaatagtgtgactttattatatttttgttattgaaatagcttagacacaagcacttatatgat 212  Q
    ||||||| | ||||||||||||||||||||| ||||||| ||  ||||||| |||| ||||||    
T  11488264 aaatagtttcactttattatatttttgttatagaaatagtttttacacaagtacttgtatgat 11488202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 235
Target Start/End: Original strand, 28803595 - 28803673
Alignment:
Q  158 tgactttattatat-ttttgttattgaaatagcttagacacaagcacttatatgattaacatttatactataaacactt 235  Q
    |||||||||| ||| ||||||||| |||||| |||| | | ||||||||||||||| | ||||||| | ||||||||||    
T  28803595 tgactttattttatcttttgttatcgaaataacttatatataagcacttatatgataagcatttatgccataaacactt 28803673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 140
Target Start/End: Complemental strand, 15978046 - 15978017
Alignment:
Q  111 cataaattgttttcagcttattttcataat 140  Q
    ||||||||||||||||||||||||||||||    
T  15978046 cataaattgttttcagcttattttcataat 15978017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 3841185 - 3841225
Alignment:
Q  26 gattatcaaatgagtattttttagtcatatgagcttattag 66  Q
    |||||||||| |||||||||||||||| ||||| |||||||    
T  3841185 gattatcaaacgagtattttttagtcaaatgagtttattag 3841225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 139
Target Start/End: Original strand, 35993389 - 35993417
Alignment:
Q  111 cataaattgttttcagcttattttcataa 139  Q
    |||||||||||||||||||||||||||||    
T  35993389 cataaattgttttcagcttattttcataa 35993417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 139
Target Start/End: Original strand, 36236451 - 36236479
Alignment:
Q  111 cataaattgttttcagcttattttcataa 139  Q
    |||||||||||||||||||||||||||||    
T  36236451 cataaattgttttcagcttattttcataa 36236479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 146 - 229
Target Start/End: Original strand, 1151 - 1235
Alignment:
Q  146 atgaaaatagtgtgactttattatat-ttttgttattgaaatagcttagacacaagcacttatatgattaacatttatactataa 229  Q
    |||| |||||| |||||||||| ||| ||||||||| ||||||||||| ||| |||||||||||||||  || ||||| ||||||    
T  1151 atgagaatagtttgactttattttatcttttgttatagaaatagcttatacataagcacttatatgatagacgtttatgctataa 1235  T

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Target: scaffold0275 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 146 - 229
Target Start/End: Complemental strand, 2824 - 2740
Alignment:
Q  146 atgaaaatagtgtgactttattatat-ttttgttattgaaatagcttagacacaagcacttatatgattaacatttatactataa 229  Q
    |||| |||||| |||||||||| ||| ||||||||| ||||||||||| ||| |||||||||||||||  || ||||| ||||||    
T  2824 atgagaatagtttgactttattttatcttttgttatagaaatagcttatacataagcacttatatgatagacgtttatgctataa 2740  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 172 - 240
Target Start/End: Complemental strand, 29249440 - 29249372
Alignment:
Q  172 ttttgttattgaaatagcttagacacaagcacttatatgattaacatttatactataaacacttggtta 240  Q
    ||||||||| ||||||||| | ||| ||||||||||||||| | |||||| |||||||| |||||||||    
T  29249440 ttttgttatagaaatagctgatacataagcacttatatgataagcatttacactataaaaacttggtta 29249372  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 32386212 - 32386260
Alignment:
Q  181 tgaaatagcttagacacaagcacttatatgattaacatttatactataa 229  Q
    |||||||||||| ||| ||||||||||||||| ||| ||||||||||||    
T  32386212 tgaaatagcttatacataagcacttatatgataaacttttatactataa 32386260  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 217
Target Start/End: Complemental strand, 8010337 - 8010278
Alignment:
Q  158 tgactttattatatttttgttattgaaatagcttagacacaagcacttatatgattaaca 217  Q
    |||||||||| |||| ||||||| ||||||||||| ||  ||||||||||||||| ||||    
T  8010337 tgactttattttattgttgttatagaaatagcttatacctaagcacttatatgataaaca 8010278  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 212
Target Start/End: Original strand, 10452437 - 10452504
Alignment:
Q  146 atgaaaatagtgtgactttattatat-ttttgttattgaaatagcttagacacaagcacttatatgat 212  Q
    ||||||||||| ||| |||||| ||| ||||||||| ||||||||||| ||| ||||||| |||||||    
T  10452437 atgaaaatagtttgattttattttatattttgttatagaaatagcttatacataagcactgatatgat 10452504  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 211
Target Start/End: Complemental strand, 4248939 - 4248885
Alignment:
Q  158 tgactttattatat-ttttgttattgaaatagcttagacacaagcacttatatga 211  Q
    |||||||||| ||| ||||||||||||||||||||| | | ||||||||||||||    
T  4248939 tgactttattttatcttttgttattgaaatagcttatatataagcacttatatga 4248885  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 229
Target Start/End: Complemental strand, 2514688 - 2514611
Alignment:
Q  153 tagtgtgactttattatat-ttttgttattgaaatagcttagacacaagcacttatatgattaacatttatactataa 229  Q
    |||| |||||||||| ||| |||| |||| ||||||||||| ||| ||||||||| ||||| | ||||||| ||||||    
T  2514688 tagtttgactttattttatcttttattatagaaatagcttatacataagcacttacatgataagcatttatgctataa 2514611  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 229
Target Start/End: Original strand, 32386667 - 32386724
Alignment:
Q  172 ttttgttattgaaatagcttagacacaagcacttatatgattaacatttatactataa 229  Q
    |||| ||| ||||||||  || ||| ||||||||||||||| ||||||||||||||||    
T  32386667 ttttcttagtgaaatagtctatacataagcacttatatgataaacatttatactataa 32386724  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 212
Target Start/End: Original strand, 28130029 - 28130069
Alignment:
Q  172 ttttgttattgaaatagcttagacacaagcacttatatgat 212  Q
    ||||||||| ||||||||||| ||||||| |||||||||||    
T  28130029 ttttgttatagaaatagcttaaacacaagtacttatatgat 28130069  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 212
Target Start/End: Original strand, 31668789 - 31668829
Alignment:
Q  172 ttttgttattgaaatagcttagacacaagcacttatatgat 212  Q
    ||||||||| ||||||||||| ||| |||||||||||||||    
T  31668789 ttttgttatagaaatagcttatacataagcacttatatgat 31668829  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 211
Target Start/End: Complemental strand, 47970310 - 47970245
Alignment:
Q  147 tgaaaatagtgtgactttattatat-ttttgttattgaaatagcttagacacaagcacttatatga 211  Q
    |||||||||| |||||| ||| ||| ||||||||| ||||||||||| ||| ||||||||||||||    
T  47970310 tgaaaatagtttgacttcattttatcttttgttatagaaatagcttatacataagcacttatatga 47970245  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 222
Target Start/End: Original strand, 2980574 - 2980625
Alignment:
Q  171 tttttgttattgaaatagcttagacacaagcacttatatgattaacatttat 222  Q
    |||||||||| ||||||||||| ||| ||||||||||||||| |||| ||||    
T  2980574 tttttgttatagaaatagcttatacataagcacttatatgataaacacttat 2980625  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 212
Target Start/End: Original strand, 54325114 - 54325181
Alignment:
Q  146 atgaaaatagtgtgactttattatat-ttttgttattgaaatagcttagacacaagcacttatatgat 212  Q
    ||||||| ||| |||||||||| ||| |||||| || ||||||| ||| |||||||||||||||||||    
T  54325114 atgaaaacagtttgactttattttatcttttgtaatagaaatagtttatacacaagcacttatatgat 54325181  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 211
Target Start/End: Complemental strand, 32724112 - 32724046
Alignment:
Q  146 atgaaaatagtgtgactttattatat-ttttgttattgaaatagcttagacacaagcacttatatga 211  Q
    ||||||||||| |||||||||| ||| |||||| || ||||||| ||||||| ||||||| ||||||    
T  32724112 atgaaaatagtttgactttattttatcttttgtaatagaaatagattagacataagcactgatatga 32724046  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 231
Target Start/End: Complemental strand, 54986402 - 54986329
Alignment:
Q  158 tgactttattatatttttgttattgaaatagcttagacacaagcacttatatgattaacatttatactataaac 231  Q
    |||||||||  |||||||||||| ||||||||||| ||| ||  ||||||||||||  | ||||| ||||||||    
T  54986402 tgactttatcttatttttgttatagaaatagcttatacataaaaacttatatgattggcgtttatgctataaac 54986329  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 212
Target Start/End: Complemental strand, 4191705 - 4191665
Alignment:
Q  172 ttttgttattgaaatagcttagacacaagcacttatatgat 212  Q
    ||||||||| ||||||||||| ||| |||||||||||||||    
T  4191705 ttttgttatagaaatagcttatacataagcacttatatgat 4191665  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 212
Target Start/End: Original strand, 41241648 - 41241688
Alignment:
Q  172 ttttgttattgaaatagcttagacacaagcacttatatgat 212  Q
    ||||||||| ||||||||||| ||||||| |||||||||||    
T  41241648 ttttgttatagaaatagcttaaacacaagtacttatatgat 41241688  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 235
Target Start/End: Complemental strand, 47004077 - 47003990
Alignment:
Q  149 aaaatagtgtgactttattatattt-ttgttattgaaatagcttagacacaagcacttatatgattaacatttatactataaacactt 235  Q
    |||||||| |||||||||| ||| | ||||||| ||||||||||| | | || |||||||||||| ||||||| | |||||| |||||    
T  47004077 aaaatagtttgactttattttatctattgttatagaaatagcttacatataaacacttatatgataaacatttttgctataagcactt 47003990  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 212
Target Start/End: Complemental strand, 7244702 - 7244628
Alignment:
Q  139 atagctcatgaaaatagtgtgactttattatat-ttttgttattgaaatagcttagacacaagcacttatatgat 212  Q
    |||||| ||||||| ||| ||||||| || ||| ||||| ||| ||||||||||| ||| |||||||||||||||    
T  7244702 atagcttatgaaaacagtttgactttcttttatcttttgatatagaaatagcttatacataagcacttatatgat 7244628  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 222
Target Start/End: Complemental strand, 45078262 - 45078209
Alignment:
Q  169 tatttttgttattgaaatagcttagacacaagcacttatatgattaacatttat 222  Q
    ||||||||||||  |||||||||| ||| ||||||||||||||| ||| |||||    
T  45078262 tatttttgttataaaaatagcttatacataagcacttatatgataaacgtttat 45078209  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 27481399 - 27481455
Alignment:
Q  173 tttgttattgaaatagcttagacacaagcacttatatgattaacatttatactataa 229  Q
    |||||||| ||||||||||| ||| || ||||||||| || ||||||||| ||||||    
T  27481399 tttgttatagaaatagcttatacataaacacttatataataaacatttatgctataa 27481455  T

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Target: scaffold0455 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0455
Description:

Target: scaffold0455; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 212
Target Start/End: Original strand, 8616 - 8656
Alignment:
Q  172 ttttgttattgaaatagcttagacacaagcacttatatgat 212  Q
    ||||||||| ||||||||||| ||||||| |||||||||||    
T  8616 ttttgttatagaaatagcttaaacacaagtacttatatgat 8656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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