View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5570_low_22 (Length: 241)

Name: NF5570_low_22
Description: NF5570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5570_low_22
NF5570_low_22
[»] chr1 (5 HSPs)
chr1 (52-208)||(18893023-18893179)
chr1 (1-39)||(18216992-18217030)
chr1 (1-39)||(17776926-17776964)
chr1 (1-38)||(16343114-16343151)
chr1 (1-38)||(50824357-50824394)
[»] chr3 (12 HSPs)
chr3 (3-39)||(2369015-2369051)
chr3 (1-39)||(5641560-5641598)
chr3 (1-39)||(9220199-9220237)
chr3 (1-39)||(33225294-33225332)
chr3 (1-39)||(50727190-50727228)
chr3 (1-39)||(50785620-50785658)
chr3 (1-38)||(15492177-15492214)
chr3 (1-38)||(48722330-48722367)
chr3 (1-33)||(31797122-31797154)
chr3 (1-37)||(47098818-47098854)
chr3 (1-37)||(50659676-50659712)
chr3 (1-37)||(51467273-51467309)
[»] scaffold0366 (1 HSPs)
scaffold0366 (1-39)||(806-844)
[»] chr8 (2 HSPs)
chr8 (1-39)||(1337061-1337099)
chr8 (1-38)||(7763886-7763923)
[»] chr7 (4 HSPs)
chr7 (1-39)||(32676888-32676926)
chr7 (1-38)||(11453629-11453666)
chr7 (1-38)||(32047175-32047212)
chr7 (1-37)||(21388601-21388637)
[»] chr5 (5 HSPs)
chr5 (1-39)||(14641055-14641093)
chr5 (1-39)||(27798707-27798745)
chr5 (1-38)||(19273160-19273197)
chr5 (1-38)||(36888342-36888379)
chr5 (2-38)||(16280333-16280369)
[»] chr2 (3 HSPs)
chr2 (1-39)||(18278363-18278401)
chr2 (1-38)||(2643783-2643820)
chr2 (1-38)||(28194718-28194755)
[»] scaffold0394 (1 HSPs)
scaffold0394 (1-38)||(1348-1385)
[»] scaffold0254 (1 HSPs)
scaffold0254 (1-38)||(1403-1440)


Alignment Details
Target: chr1 (Bit Score: 149; Significance: 8e-79; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 52 - 208
Target Start/End: Complemental strand, 18893179 - 18893023
Alignment:
Q  52 ttatagttatttagattaacttttataatctaaatgaatatactttgaatttctagcatagaaaatttatatgtataatgttttgacttcccttttttgg 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  18893179 ttatagttatttagattaacttttataatctaaatgaatatactttgaatttctagcatagaaaatttatatgtataatgttttgtcttcccttttttgg 18893080  T
Q  152 tggtgtcttgtcttccttaaataaatattaatatttctctctatctatttttaggag 208  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  18893079 tggtgtcttgtcttcgttaaataaatattaatatttctctctatctatttttaggag 18893023  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 18216992 - 18217030
Alignment:
Q  1 attaaattgtgcgagctctagccactaagctatttgacc 39  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  18216992 attaaattgtgtgagctctagccactaagctatttgacc 18217030  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 17776926 - 17776964
Alignment:
Q  1 attaaattgtgcgagctctagccactaagctatttgacc 39  Q
    ||||||||||||||||||||||||||| |||| ||||||    
T  17776926 attaaattgtgcgagctctagccactaggctacttgacc 17776964  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 16343114 - 16343151
Alignment:
Q  1 attaaattgtgcgagctctagccactaagctatttgac 38  Q
    ||||||||||| |||||||||||||||||||| |||||    
T  16343114 attaaattgtgtgagctctagccactaagctacttgac 16343151  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 50824394 - 50824357
Alignment:
Q  1 attaaattgtgcgagctctagccactaagctatttgac 38  Q
    ||||||||||| ||||| ||||||||||||||||||||    
T  50824394 attaaattgtgtgagctatagccactaagctatttgac 50824357  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 2369015 - 2369051
Alignment:
Q  3 taaattgtgcgagctctagccactaagctatttgacc 39  Q
    ||||||||||||||||||||||||| |||||||||||    
T  2369015 taaattgtgcgagctctagccactaggctatttgacc 2369051  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 5641598 - 5641560
Alignment:
Q  1 attaaattgtgcgagctctagccactaagctatttgacc 39  Q
    ||||||||||| |||||||||||||||||||| ||||||    
T  5641598 attaaattgtgtgagctctagccactaagctacttgacc 5641560  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 9220237 - 9220199
Alignment:
Q  1 attaaattgtgcgagctctagccactaagctatttgacc 39  Q
    ||||||||||| |||||||||||||||| ||||||||||    
T  9220237 attaaattgtgtgagctctagccactaaactatttgacc 9220199  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 33225332 - 33225294
Alignment:
Q  1 attaaattgtgcgagctctagccactaagctatttgacc 39  Q
    ||||||||||| |||||||||||||||||||| ||||||    
T  33225332 attaaattgtgtgagctctagccactaagctacttgacc 33225294  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 50727228 - 50727190
Alignment:
Q  1 attaaattgtgcgagctctagccactaagctatttgacc 39  Q
    ||||||||||| |||||||||||||||||||| ||||||    
T  50727228 attaaattgtgtgagctctagccactaagctacttgacc 50727190  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 50785620 - 50785658
Alignment:
Q  1 attaaattgtgcgagctctagccactaagctatttgacc 39  Q
    ||||||||||| |||||||||||||||||||| ||||||    
T  50785620 attaaattgtgtgagctctagccactaagctacttgacc 50785658  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 15492177 - 15492214
Alignment:
Q  1 attaaattgtgcgagctctagccactaagctatttgac 38  Q
    ||||||||||| ||||||||||||||| ||||||||||    
T  15492177 attaaattgtgtgagctctagccactaggctatttgac 15492214  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 48722330 - 48722367
Alignment:
Q  1 attaaattgtgcgagctctagccactaagctatttgac 38  Q
    ||||||||||| |||||||||||||||||||| |||||    
T  48722330 attaaattgtgtgagctctagccactaagctacttgac 48722367  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 31797122 - 31797154
Alignment:
Q  1 attaaattgtgcgagctctagccactaagctat 33  Q
    ||||||||||| |||||||||||||||||||||    
T  31797122 attaaattgtgtgagctctagccactaagctat 31797154  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 47098818 - 47098854
Alignment:
Q  1 attaaattgtgcgagctctagccactaagctatttga 37  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  47098818 attaaattgtgtgagctctagccactaagctacttga 47098854  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 50659676 - 50659712
Alignment:
Q  1 attaaattgtgcgagctctagccactaagctatttga 37  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  50659676 attaaattgtgtgagctctagccactaagctacttga 50659712  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 51467273 - 51467309
Alignment:
Q  1 attaaattgtgcgagctctagccactaagctatttga 37  Q
    ||||||||||| ||||||||||||||| |||||||||    
T  51467273 attaaattgtgtgagctctagccactaggctatttga 51467309  T

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Target: scaffold0366 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 844 - 806
Alignment:
Q  1 attaaattgtgcgagctctagccactaagctatttgacc 39  Q
    ||||||||||||||||||||||||||| |||| ||||||    
T  844 attaaattgtgcgagctctagccactaggctacttgacc 806  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 1337099 - 1337061
Alignment:
Q  1 attaaattgtgcgagctctagccactaagctatttgacc 39  Q
    ||||||||||| ||||||||||||||| |||||||||||    
T  1337099 attaaattgtgtgagctctagccactaggctatttgacc 1337061  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 7763923 - 7763886
Alignment:
Q  1 attaaattgtgcgagctctagccactaagctatttgac 38  Q
    ||||||||||| |||||||||||||||||||| |||||    
T  7763923 attaaattgtgtgagctctagccactaagctacttgac 7763886  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 32676926 - 32676888
Alignment:
Q  1 attaaattgtgcgagctctagccactaagctatttgacc 39  Q
    ||||||||||| |||||||||||||||||||| ||||||    
T  32676926 attaaattgtgtgagctctagccactaagctacttgacc 32676888  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 11453666 - 11453629
Alignment:
Q  1 attaaattgtgcgagctctagccactaagctatttgac 38  Q
    ||||||||||| ||||||||||||||| ||||||||||    
T  11453666 attaaattgtgtgagctctagccactaggctatttgac 11453629  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 32047175 - 32047212
Alignment:
Q  1 attaaattgtgcgagctctagccactaagctatttgac 38  Q
    ||||||||||| ||||||||||||||| ||||||||||    
T  32047175 attaaattgtgtgagctctagccactaggctatttgac 32047212  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 21388601 - 21388637
Alignment:
Q  1 attaaattgtgcgagctctagccactaagctatttga 37  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  21388601 attaaattgtgtgagctctagccactaagctacttga 21388637  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 14641093 - 14641055
Alignment:
Q  1 attaaattgtgcgagctctagccactaagctatttgacc 39  Q
    ||||||||||||||||||||||||||| |||| ||||||    
T  14641093 attaaattgtgcgagctctagccactaggctacttgacc 14641055  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 27798707 - 27798745
Alignment:
Q  1 attaaattgtgcgagctctagccactaagctatttgacc 39  Q
    ||||||||||| ||||||||||||||| |||||||||||    
T  27798707 attaaattgtgtgagctctagccactaggctatttgacc 27798745  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 19273197 - 19273160
Alignment:
Q  1 attaaattgtgcgagctctagccactaagctatttgac 38  Q
    ||||||||||| ||||||||||||||| ||||||||||    
T  19273197 attaaattgtgtgagctctagccactaggctatttgac 19273160  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 36888379 - 36888342
Alignment:
Q  1 attaaattgtgcgagctctagccactaagctatttgac 38  Q
    ||||||||||| |||||||||||||||||||| |||||    
T  36888379 attaaattgtgtgagctctagccactaagctacttgac 36888342  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 16280333 - 16280369
Alignment:
Q  2 ttaaattgtgcgagctctagccactaagctatttgac 38  Q
    |||||||||| ||||||||||||||| ||||||||||    
T  16280333 ttaaattgtgtgagctctagccactaggctatttgac 16280369  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 18278401 - 18278363
Alignment:
Q  1 attaaattgtgcgagctctagccactaagctatttgacc 39  Q
    ||||||||||| ||||||||||||||| |||||||||||    
T  18278401 attaaattgtgtgagctctagccactaggctatttgacc 18278363  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 2643783 - 2643820
Alignment:
Q  1 attaaattgtgcgagctctagccactaagctatttgac 38  Q
    ||||||||||| |||||||||||||||||||| |||||    
T  2643783 attaaattgtgtgagctctagccactaagctacttgac 2643820  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 28194718 - 28194755
Alignment:
Q  1 attaaattgtgcgagctctagccactaagctatttgac 38  Q
    ||||||||||| ||||||||||||||| ||||||||||    
T  28194718 attaaattgtgtgagctctagccactaggctatttgac 28194755  T

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Target: scaffold0394 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 1348 - 1385
Alignment:
Q  1 attaaattgtgcgagctctagccactaagctatttgac 38  Q
    ||||||||||| |||||||||||||||||||| |||||    
T  1348 attaaattgtgtgagctctagccactaagctacttgac 1385  T

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Target: scaffold0254 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 1403 - 1440
Alignment:
Q  1 attaaattgtgcgagctctagccactaagctatttgac 38  Q
    ||||||||||| |||||||||||||||||||| |||||    
T  1403 attaaattgtgtgagctctagccactaagctacttgac 1440  T

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