View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5570_low_23 (Length: 232)

Name: NF5570_low_23
Description: NF5570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5570_low_23
NF5570_low_23
[»] chr5 (34 HSPs)
chr5 (142-222)||(557573-557653)
chr5 (142-222)||(562345-562425)
chr5 (142-222)||(36936647-36936727)
chr5 (142-222)||(36941401-36941481)
chr5 (4-68)||(557721-557785)
chr5 (4-68)||(562493-562557)
chr5 (4-68)||(36941269-36941333)
chr5 (142-222)||(42002311-42002391)
chr5 (142-222)||(3666751-3666831)
chr5 (142-218)||(12044268-12044344)
chr5 (4-68)||(36936515-36936579)
chr5 (142-220)||(15394991-15395069)
chr5 (142-222)||(13300626-13300707)
chr5 (4-67)||(12044137-12044200)
chr5 (4-63)||(32460550-32460609)
chr5 (142-222)||(41099550-41099629)
chr5 (142-222)||(41997520-41997600)
chr5 (142-223)||(31732417-31732499)
chr5 (142-222)||(21323177-21323258)
chr5 (4-65)||(41997670-41997731)
chr5 (142-222)||(8771141-8771221)
chr5 (148-222)||(23976708-23976782)
chr5 (152-222)||(32460695-32460765)
chr5 (4-65)||(42002461-42002522)
chr5 (144-222)||(36949600-36949677)
chr5 (142-222)||(24435314-24435396)
chr5 (142-213)||(27425242-27425313)
chr5 (4-67)||(13300489-13300558)
chr5 (4-67)||(21323040-21323109)
chr5 (13-67)||(3666900-3666956)
chr5 (177-222)||(21827227-21827272)
chr5 (188-218)||(1429358-1429388)
chr5 (4-34)||(31732612-31732642)
chr5 (2-34)||(1428873-1428905)
[»] chr8 (19 HSPs)
chr8 (142-222)||(4237477-4237557)
chr8 (142-222)||(4242216-4242296)
chr8 (4-68)||(4237346-4237410)
chr8 (4-68)||(4242085-4242149)
chr8 (4-67)||(31448870-31448933)
chr8 (143-222)||(31449002-31449081)
chr8 (4-67)||(43301749-43301812)
chr8 (142-222)||(4582417-4582497)
chr8 (142-222)||(25367144-25367225)
chr8 (142-222)||(8330522-8330603)
chr8 (142-222)||(37772582-37772663)
chr8 (146-223)||(42972978-42973055)
chr8 (142-222)||(22104699-22104780)
chr8 (142-212)||(43301867-43301936)
chr8 (1-71)||(42973114-42973186)
chr8 (142-222)||(16066345-16066426)
chr8 (179-222)||(19391268-19391311)
chr8 (4-34)||(37772777-37772807)
chr8 (142-182)||(34817879-34817919)
[»] chr3 (33 HSPs)
chr3 (142-222)||(3034521-3034601)
chr3 (142-222)||(3693497-3693577)
chr3 (142-222)||(8070557-8070637)
chr3 (142-222)||(8888808-8888888)
chr3 (142-218)||(8884052-8884128)
chr3 (4-68)||(3673591-3673655)
chr3 (4-68)||(3693645-3693709)
chr3 (4-68)||(8070704-8070768)
chr3 (4-67)||(8888942-8889005)
chr3 (142-224)||(6595565-6595647)
chr3 (4-67)||(8884196-8884259)
chr3 (142-222)||(10585327-10585408)
chr3 (4-68)||(3034669-3034733)
chr3 (142-222)||(8197472-8197552)
chr3 (142-222)||(30248-30328)
chr3 (142-222)||(8223955-8224035)
chr3 (142-222)||(18349769-18349849)
chr3 (142-216)||(3673449-3673523)
chr3 (142-221)||(12898885-12898964)
chr3 (142-222)||(14424852-14424933)
chr3 (143-214)||(631827-631898)
chr3 (142-222)||(16056054-16056135)
chr3 (142-214)||(35456017-35456087)
chr3 (151-222)||(51923224-51923295)
chr3 (142-218)||(16043383-16043460)
chr3 (24-67)||(429462-429505)
chr3 (4-34)||(631995-632025)
chr3 (4-34)||(10585184-10585214)
chr3 (143-214)||(16023374-16023447)
chr3 (142-222)||(429289-429369)
chr3 (142-186)||(35458187-35458231)
chr3 (142-182)||(45903718-45903758)
chr3 (142-214)||(53358969-53359041)
[»] chr2 (26 HSPs)
chr2 (142-222)||(10159852-10159932)
chr2 (142-224)||(28856005-28856087)
chr2 (142-215)||(30659029-30659102)
chr2 (4-67)||(10159722-10159785)
chr2 (4-67)||(30659170-30659233)
chr2 (142-222)||(17452723-17452803)
chr2 (152-222)||(34070439-34070509)
chr2 (142-222)||(6297051-6297132)
chr2 (142-222)||(24292586-24292666)
chr2 (142-214)||(35602519-35602590)
chr2 (142-222)||(42249228-42249307)
chr2 (143-222)||(30635656-30635735)
chr2 (146-222)||(22845261-22845335)
chr2 (142-222)||(7559467-7559547)
chr2 (142-222)||(24285909-24285988)
chr2 (142-222)||(25375784-25375864)
chr2 (142-214)||(30640148-30640220)
chr2 (143-218)||(17327912-17327988)
chr2 (142-214)||(30629727-30629799)
chr2 (4-67)||(19588689-19588752)
chr2 (4-62)||(35602629-35602687)
chr2 (158-222)||(377432-377496)
chr2 (142-214)||(6857203-6857275)
chr2 (4-35)||(30637203-30637234)
chr2 (4-34)||(6296915-6296945)
chr2 (4-71)||(17452515-17452582)
[»] chr1 (24 HSPs)
chr1 (142-222)||(3094967-3095047)
chr1 (142-222)||(1067296-1067376)
chr1 (142-222)||(40232529-40232609)
chr1 (4-68)||(3095114-3095178)
chr1 (142-222)||(41097095-41097176)
chr1 (142-222)||(21498671-21498750)
chr1 (149-222)||(8267015-8267089)
chr1 (144-222)||(16836422-16836500)
chr1 (142-222)||(52100221-52100301)
chr1 (142-222)||(17213583-17213662)
chr1 (142-222)||(19725043-19725123)
chr1 (162-216)||(13894181-13894235)
chr1 (142-222)||(2367933-2368014)
chr1 (143-216)||(8273294-8273367)
chr1 (142-222)||(2384368-2384448)
chr1 (142-214)||(27308065-27308137)
chr1 (177-222)||(22428353-22428398)
chr1 (177-222)||(26199384-26199429)
chr1 (143-214)||(23284976-23285048)
chr1 (4-67)||(17213179-17213242)
chr1 (4-71)||(8273160-8273229)
chr1 (142-212)||(26319382-26319452)
chr1 (4-34)||(41096952-41096982)
chr1 (142-214)||(23254356-23254429)
[»] scaffold0182 (2 HSPs)
scaffold0182 (4-67)||(8887-8950)
scaffold0182 (142-212)||(9016-9087)
[»] chr7 (35 HSPs)
chr7 (142-222)||(11017205-11017285)
chr7 (142-222)||(47102407-47102487)
chr7 (142-222)||(9650097-9650176)
chr7 (142-222)||(27257093-27257174)
chr7 (4-64)||(23866754-23866814)
chr7 (142-211)||(40864539-40864609)
chr7 (142-222)||(10499251-10499332)
chr7 (142-222)||(10504280-10504361)
chr7 (142-222)||(19097277-19097358)
chr7 (4-67)||(9649966-9650029)
chr7 (142-224)||(11247429-11247511)
chr7 (142-222)||(838481-838562)
chr7 (142-222)||(1203661-1203742)
chr7 (4-66)||(47102560-47102624)
chr7 (167-222)||(36477861-36477916)
chr7 (142-184)||(8076911-8076953)
chr7 (142-211)||(9009023-9009092)
chr7 (9-67)||(1044245-1044304)
chr7 (146-212)||(1044108-1044174)
chr7 (142-222)||(8954387-8954469)
chr7 (142-224)||(10488452-10488534)
chr7 (142-200)||(10531995-10532053)
chr7 (177-222)||(845673-845718)
chr7 (177-222)||(853054-853099)
chr7 (177-222)||(1211058-1211103)
chr7 (142-203)||(11296907-11296967)
chr7 (143-208)||(13343562-13343627)
chr7 (150-222)||(13346502-13346575)
chr7 (4-62)||(8077029-8077088)
chr7 (143-213)||(7838971-7839041)
chr7 (21-67)||(9009159-9009205)
chr7 (142-224)||(10488262-10488344)
chr7 (7-53)||(40997834-40997880)
chr7 (142-203)||(11289103-11289163)
chr7 (142-214)||(15566205-15566276)
[»] scaffold0060 (2 HSPs)
scaffold0060 (142-222)||(52054-52135)
scaffold0060 (142-222)||(47110-47191)
[»] chr6 (12 HSPs)
chr6 (142-222)||(6111898-6111979)
chr6 (142-222)||(14074025-14074105)
chr6 (142-212)||(2862673-2862743)
chr6 (142-212)||(2881976-2882046)
chr6 (142-222)||(26981577-26981658)
chr6 (4-67)||(2759261-2759326)
chr6 (142-218)||(27073963-27074040)
chr6 (9-67)||(15645697-15645756)
chr6 (11-67)||(2862552-2862609)
chr6 (11-67)||(2881855-2881912)
chr6 (4-67)||(28963875-28963941)
chr6 (146-209)||(28964005-28964068)
[»] chr4 (25 HSPs)
chr4 (142-222)||(7902248-7902329)
chr4 (142-222)||(13521122-13521201)
chr4 (142-222)||(39320439-39320519)
chr4 (142-222)||(3997202-3997283)
chr4 (142-222)||(34561280-34561361)
chr4 (142-218)||(41817667-41817744)
chr4 (142-222)||(15799271-15799350)
chr4 (142-212)||(52742397-52742467)
chr4 (4-67)||(13520991-13521054)
chr4 (4-67)||(41817811-41817876)
chr4 (142-222)||(26035078-26035159)
chr4 (146-211)||(31297659-31297724)
chr4 (142-214)||(3310090-3310162)
chr4 (142-222)||(9190671-9190751)
chr4 (4-67)||(3992772-3992841)
chr4 (7-67)||(39320590-39320652)
chr4 (142-222)||(14867926-14868008)
chr4 (142-212)||(42314758-42314828)
chr4 (143-196)||(1150492-1150545)
chr4 (142-222)||(9184832-9184912)
chr4 (143-195)||(32545780-32545832)
chr4 (7-67)||(52742258-52742317)
chr4 (143-186)||(12383481-12383524)
chr4 (192-222)||(14891392-14891422)
chr4 (7-65)||(31297533-31297593)
[»] scaffold0070 (2 HSPs)
scaffold0070 (143-222)||(59281-59361)
scaffold0070 (143-222)||(63483-63563)
[»] scaffold0015 (1 HSPs)
scaffold0015 (142-222)||(192741-192821)
[»] scaffold0061 (1 HSPs)
scaffold0061 (142-222)||(49100-49181)
[»] scaffold0041 (2 HSPs)
scaffold0041 (142-222)||(34861-34942)
scaffold0041 (1-67)||(34721-34793)
[»] scaffold0017 (1 HSPs)
scaffold0017 (142-222)||(149453-149534)
[»] scaffold0044 (2 HSPs)
scaffold0044 (142-222)||(65310-65390)
scaffold0044 (142-222)||(81558-81638)
[»] scaffold0863 (1 HSPs)
scaffold0863 (142-222)||(144-224)
[»] scaffold0132 (1 HSPs)
scaffold0132 (142-222)||(24418-24498)
[»] scaffold0020 (1 HSPs)
scaffold0020 (142-216)||(398-473)
[»] scaffold0357 (2 HSPs)
scaffold0357 (142-222)||(3470-3551)
scaffold0357 (142-218)||(13058-13135)
[»] scaffold0045 (1 HSPs)
scaffold0045 (142-214)||(83786-83858)
[»] scaffold1910 (1 HSPs)
scaffold1910 (142-222)||(734-815)
[»] scaffold0628 (3 HSPs)
scaffold0628 (5-67)||(7458-7522)
scaffold0628 (163-212)||(7309-7358)
scaffold0628 (158-222)||(5591-5655)
[»] scaffold0004 (1 HSPs)
scaffold0004 (158-222)||(200078-200142)
[»] scaffold0327 (1 HSPs)
scaffold0327 (144-218)||(8724-8799)
[»] scaffold0131 (1 HSPs)
scaffold0131 (142-213)||(8453-8524)
[»] scaffold0009 (1 HSPs)
scaffold0009 (171-222)||(71992-72043)
[»] scaffold0211 (1 HSPs)
scaffold0211 (158-212)||(22956-23010)


Alignment Details
Target: chr5 (Bit Score: 77; Significance: 7e-36; HSPs: 34)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 557653 - 557573
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  557653 cattattagaaagtgctttcttagtccccaagttttgctaaaataatttggaacgcaatctagaatattttggaacacaat 557573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 562425 - 562345
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  562425 cattattagaaagtgctttcttagtccccaagttttgctaaaataatttggaacgcaatctagaatattttggaacacaat 562345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 36936647 - 36936727
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  36936647 cattattagaaagtgttttcttagtccccaagttttgctaaaataatttggaacgcaatctagaatattttggaacacaat 36936727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 36941401 - 36941481
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  36941401 cattattagaaagtgttttcttagtccccaagttttgctaaaataatttggaacgcaatctagaatattttggaacacaat 36941481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 557785 - 557721
Alignment:
Q  4 tagtgtttatatagtgggggtgtacctctaagaggtacatagttatgtgaacgaagtaagcactg 68  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  557785 tagtgtttatatagtgggggtgtacctctaagaggtacatagttatgtgaacgaagtaagcactg 557721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 562557 - 562493
Alignment:
Q  4 tagtgtttatatagtgggggtgtacctctaagaggtacatagttatgtgaacgaagtaagcactg 68  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  562557 tagtgtttatatagtgggggtgtacctctaagaggtacatagttatgtgaacgaagtaagcactg 562493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 36941269 - 36941333
Alignment:
Q  4 tagtgtttatatagtgggggtgtacctctaagaggtacatagttatgtgaacgaagtaagcactg 68  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36941269 tagtgtttatatagtgggggtgtacctctaagaggtacatagttatgtgaacgaagtaagcactg 36941333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 42002391 - 42002311
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    ||||||||||||||| |||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  42002391 cattattagaaagtgttttcttagcccccaagttttactaaaataatttggaacgcaatctagaatattttggaacacaat 42002311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 3666831 - 3666751
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    |||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||| | ||||||||||||||||||    
T  3666831 cattattagaaagtgctttcttagtccctaagttttgctaaaatattttggaacgcaatcgaaaatattttggaacacaat 3666751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 142 - 218
Target Start/End: Original strand, 12044268 - 12044344
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaaca 218  Q
    ||||||||||||||| |||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||    
T  12044268 cattattagaaagtgatttcttagtccccaagttttgttaaaatattttggaacgcaatctagaatattttggaaca 12044344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 36936515 - 36936579
Alignment:
Q  4 tagtgtttatatagtgggggtgtacctctaagaggtacatagttatgtgaacgaagtaagcactg 68  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  36936515 tagtgtttatatagtaggggtgtacctctaagaggtacatagttatgtgaacgaagtaagcactg 36936579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 142 - 220
Target Start/End: Original strand, 15394991 - 15395069
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacaca 220  Q
    ||||||||||||||| |||||||||||||||||| |||||||||| ||| |||| ||||||||||||||||||||||||    
T  15394991 cattattagaaagtgttttcttagtccccaagttttgctaaaatattttagaacacaatctagaatattttggaacaca 15395069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 13300626 - 13300707
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgct-aaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    ||||||||||||||| |||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||| |||||    
T  13300626 cattattagaaagtgttttcttagtccccaagttttgctaaaaatattttggaacgcaatctagaatattttggaatacaat 13300707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 12044137 - 12044200
Alignment:
Q  4 tagtgtttatatagtgggggtgtacctctaagaggtacatagttatgtgaacgaagtaagcact 67  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  12044137 tagtgtttatatagtgggggtgtatctttaagaggtacatagttatgtgaacgaagtaagcact 12044200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 4 - 63
Target Start/End: Original strand, 32460550 - 32460609
Alignment:
Q  4 tagtgtttatatagtgggggtgtacctctaagaggtacatagttatgtgaacgaagtaag 63  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  32460550 tagtgtttatatagtgggggtgtacctctaagaggtacatagttatgtgaatgaagtaag 32460609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 41099629 - 41099550
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    |||||||| ||||||||||||| ||||||||||| ||||||| || ||| |||||||||||||||||||||||||||||||    
T  41099629 cattattaaaaagtgctttctt-gtccccaagttttgctaaattattttagaacgcaatctagaatattttggaacacaat 41099550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 41997600 - 41997520
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||  ||||||| |||| |||||    
T  41997600 cattattagaaagtgctttcttagtccccaagttttactaaaataatttggaacacaatctgaaatatttgggaagacaat 41997520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 142 - 223
Target Start/End: Complemental strand, 31732499 - 31732417
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaa-taatttggaacgcaatctagaatattttggaacacaata 223  Q
    ||||||||||||||| |||| ||||||||||||| |||||||| || |||||||||||||||| |||||||||||| ||||||    
T  31732499 cattattagaaagtgttttcctagtccccaagttttgctaaaaatattttggaacgcaatctacaatattttggaatacaata 31732417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 21323177 - 21323258
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaa-taatttggaacgcaatctagaatattttggaacacaat 222  Q
    |||||||| |||||| ||||||||||||||| || |||||||| || |||||||||||||||||||||||||||||| ||||    
T  21323177 cattattacaaagtgttttcttagtccccaaattttgctaaaaatattttggaacgcaatctagaatattttggaacgcaat 21323258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 4 - 65
Target Start/End: Complemental strand, 41997731 - 41997670
Alignment:
Q  4 tagtgtttatatagtgggggtgtacctctaagaggtacatagttatgtgaacgaagtaagca 65  Q
    ||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||    
T  41997731 tagtgtttatatattgggggtgtacttctaggaggtacatagttatgtgaacgaagtaagca 41997670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 8771221 - 8771141
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    |||||||| |||||| |||||| ||||||||||| |||||||||| ||| |||||||| ||| ||||||||||||||||||    
T  8771221 cattattaaaaagtgttttctttgtccccaagttttgctaaaatattttagaacgcaaactaaaatattttggaacacaat 8771141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 148 - 222
Target Start/End: Original strand, 23976708 - 23976782
Alignment:
Q  148 tagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    ||||||||| ||||||||| | |||||| |||||||||| ||||||| ||||| |||||||||||||||||||||    
T  23976708 tagaaagtgttttcttagttctcaagttttgctaaaatattttggaatgcaatttagaatattttggaacacaat 23976782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 152 - 222
Target Start/End: Original strand, 32460695 - 32460765
Alignment:
Q  152 aagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    ||||| ||||||||||||||| || | |||||||| |||||| ||||||||||||||||||||||||||||    
T  32460695 aagtgttttcttagtccccaaattttcctaaaatattttggagcgcaatctagaatattttggaacacaat 32460765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 65
Target Start/End: Complemental strand, 42002522 - 42002461
Alignment:
Q  4 tagtgtttatatagtgggggtgtacctctaagaggtacatagttatgtgaacgaagtaagca 65  Q
    ||||||||||||| || |||||||| |||| |||||||||||||||||||||||||||||||    
T  42002522 tagtgtttatatattgagggtgtacttctaggaggtacatagttatgtgaacgaagtaagca 42002461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 144 - 222
Target Start/End: Complemental strand, 36949677 - 36949600
Alignment:
Q  144 ttattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    ||||||||||||||||||||||| ||||| || ||||||||| |||| | | ||||| |||||||||||||||||||||    
T  36949677 ttattagaaagtgctttcttagttcccaaattttgctaaaat-atttcggatgcaatttagaatattttggaacacaat 36949600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 24435314 - 24435396
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataattt--ggaacgcaatctagaatattttggaacacaat 222  Q
    ||||||| |||||||||||||||||| ||||| |   |||| ||| |||  ||||||||||||||||||||||||||||||||    
T  24435314 cattatttgaaagtgctttcttagtctccaagattgactaagatattttttggaacgcaatctagaatattttggaacacaat 24435396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 142 - 213
Target Start/End: Complemental strand, 27425313 - 27425242
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttg 213  Q
    ||||||||||||||| ||||||| |||| ||||| || ||||||| |||| ||||||||||| |||||||||    
T  27425313 cattattagaaagtgttttcttactccctaagttttgttaaaatattttgaaacgcaatctaaaatattttg 27425242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 13300489 - 13300558
Alignment:
Q  4 tagtgtttatatagtgggggtgtacctctaa------gaggtacatagttatgtgaacgaagtaagcact 67  Q
    |||||||||||||||||||||||||||||||      | |||||||| ||||||||||||||||||||||    
T  13300489 tagtgtttatatagtgggggtgtacctctaattaatgggggtacataattatgtgaacgaagtaagcact 13300558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 21323040 - 21323109
Alignment:
Q  4 tagtgtttatatagtgggggtgtacctctaa------gaggtacatagttatgtgaacgaagtaagcact 67  Q
    |||||||||||||||||||||||||||||||      | |||||||| ||||||||||||||||||||||    
T  21323040 tagtgtttatatagtgggggtgtacctctaattaatgggggtacataattatgtgaacgaagtaagcact 21323109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 3666956 - 3666900
Alignment:
Q  13 tatagtgggggtgtacctctaagagg--tacatagttatgtgaacgaagtaagcact 67  Q
    |||||||||||||||||||||| |||  |||||| |||||||||||| |||||||||    
T  3666956 tatagtgggggtgtacctctaataggggtacataattatgtgaacgatgtaagcact 3666900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 21827272 - 21827227
Alignment:
Q  177 tgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    |||||||||| ||| |||||||||||||||||||||||| ||||||    
T  21827272 tgctaaaatattttagaacgcaatctagaatattttggagcacaat 21827227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 218
Target Start/End: Original strand, 1429358 - 1429388
Alignment:
Q  188 tttggaacgcaatctagaatattttggaaca 218  Q
    |||||||||||||||||||||||||||||||    
T  1429358 tttggaacgcaatctagaatattttggaaca 1429388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 34
Target Start/End: Complemental strand, 31732642 - 31732612
Alignment:
Q  4 tagtgtttatatagtgggggtgtacctctaa 34  Q
    |||||||||||||||||||||||||||||||    
T  31732642 tagtgtttatatagtgggggtgtacctctaa 31732612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 34
Target Start/End: Original strand, 1428873 - 1428905
Alignment:
Q  2 aatagtgtttatatagtgggggtgtacctctaa 34  Q
    ||||||||||||||||| |||||||||||||||    
T  1428873 aatagtgtttatatagttggggtgtacctctaa 1428905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 4237477 - 4237557
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  4237477 cattattagaaagtgttttcttagtccccaagttttgctaaaataatttggaacgcaatctagaatattttggaacacaat 4237557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 4242216 - 4242296
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  4242216 cattattagaaagtgttttcttagtccccaagttttgctaaaataatttggaacgcaatctagaatattttggaacacaat 4242296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 4237346 - 4237410
Alignment:
Q  4 tagtgtttatatagtgggggtgtacctctaagaggtacatagttatgtgaacgaagtaagcactg 68  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4237346 tagtgtttatatagtgggggtgtacctctaagaggtacatagttatgtgaacgaagtaagcactg 4237410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 4242085 - 4242149
Alignment:
Q  4 tagtgtttatatagtgggggtgtacctctaagaggtacatagttatgtgaacgaagtaagcactg 68  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4242085 tagtgtttatatagtgggggtgtacctctaagaggtacatagttatgtgaacgaagtaagcactg 4242149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 31448870 - 31448933
Alignment:
Q  4 tagtgtttatatagtgggggtgtacctctaagaggtacatagttatgtgaacgaagtaagcact 67  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31448870 tagtgtttatatagtgggggtgtacctctaagaggtacatagttatgtgaacgaagtaagcact 31448933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 31449002 - 31449081
Alignment:
Q  143 attattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    ||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||    
T  31449002 attattagaaagtgccttcttagtccccaagttttactaaaataatttggaacgcaatctagaatatttaggaacacaat 31449081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 43301749 - 43301812
Alignment:
Q  4 tagtgtttatatagtgggggtgtacctctaagaggtacatagttatgtgaacgaagtaagcact 67  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  43301749 tagtgtttatatagtgggggtgtacctctaagaggtacatagttatctgaacgaagtaagcact 43301812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 4582417 - 4582497
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    |||||||| ||||||||||||| ||||||||||| ||||||| || ||||||| |||||||||||||||||||||||||||    
T  4582417 cattattaaaaagtgctttcttggtccccaagttttgctaaattattttggaatgcaatctagaatattttggaacacaat 4582497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 25367144 - 25367225
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgct-aaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    ||||||||||||||| |||||||||||||||||| |||| |||||| ||||||||||||||||||||||||| |||| ||||    
T  25367144 cattattagaaagtgttttcttagtccccaagttttgctgaaaatattttggaacgcaatctagaatattttagaacgcaat 25367225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 8330522 - 8330603
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgct-aaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    ||||||||||||||| |||||||||||||||||| || | |||||| |||||||||||||| ||||||||||||||| ||||    
T  8330522 cattattagaaagtgttttcttagtccccaagttttgataaaaatattttggaacgcaatcaagaatattttggaacgcaat 8330603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 37772663 - 37772582
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgct-aaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    ||||||||||||||| |||| ||||||||||||| |||| |||||| ||||||||||||| ||||||||||||||| |||||    
T  37772663 cattattagaaagtgttttcctagtccccaagttctgctaaaaatattttggaacgcaatttagaatattttggaatacaat 37772582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 146 - 223
Target Start/End: Complemental strand, 42973055 - 42972978
Alignment:
Q  146 attagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaata 223  Q
    ||||||||||| ||| | |||||||||||| || ||||||| |||||||||||||||| |||||||||||||||||||    
T  42973055 attagaaagtgttttttgagtccccaagttttggtaaaatattttggaacgcaatctaaaatattttggaacacaata 42972978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 22104780 - 22104699
Alignment:
Q  142 cattattagaaagtgcttt-cttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    |||||||| |||||||||| ||| ||| ||| ||| |||||||||| ||| |||||||||||||||||||||||||||||||    
T  22104780 cattattaaaaagtgcttttctttgtctccatgttttgctaaaatattttagaacgcaatctagaatattttggaacacaat 22104699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 142 - 212
Target Start/End: Original strand, 43301867 - 43301936
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatatttt 212  Q
    ||||||||||||||| ||| |||||||||||||| |||||||||||||||||| ||||||||  |||||||    
T  43301867 cattattagaaagtgtttt-ttagtccccaagttttgctaaaataatttggaaggcaatctaatatatttt 43301936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 42973186 - 42973114
Alignment:
Q  1 taatagtgtttatatagtgggggtgtacctcta--agaggtacatagttatgtgaacgaagtaagcactggag 71  Q
    ||||| |||||||||||||||||||||||||||  || |||| ||| |||||||||| |||||||||||||||    
T  42973186 taataatgtttatatagtgggggtgtacctctaataggggtatataattatgtgaactaagtaagcactggag 42973114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 16066345 - 16066426
Alignment:
Q  142 cattattagaaagtgcttt-cttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    |||| ||| |||||||||| ||| ||||||| ||| |||||||||| ||| ||||| |||||||||||||||||| ||||||    
T  16066345 cattgttaaaaagtgcttttctttgtccccatgttttgctaaaatattttagaacgtaatctagaatattttggagcacaat 16066426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 222
Target Start/End: Original strand, 19391268 - 19391311
Alignment:
Q  179 ctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    |||||||| ||| |||||||||||||||||||||||||||||||    
T  19391268 ctaaaatattttagaacgcaatctagaatattttggaacacaat 19391311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 34
Target Start/End: Complemental strand, 37772807 - 37772777
Alignment:
Q  4 tagtgtttatatagtgggggtgtacctctaa 34  Q
    |||||||||||||||||||||||||||||||    
T  37772807 tagtgtttatatagtgggggtgtacctctaa 37772777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 182
Target Start/End: Original strand, 34817879 - 34817919
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaa 182  Q
    ||||||||||||||| |||||||||| ||||||| ||||||    
T  34817879 cattattagaaagtgttttcttagtctccaagttttgctaa 34817919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 3034601 - 3034521
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  3034601 cattattagaaagtgttttcttagtccccaagttttgctaaaataatttggaacgcaatctagaatattttggaacacaat 3034521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 3693577 - 3693497
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  3693577 cattattagaaagtgttttcttagtccccaagttttgctaaaataatttggaacgcaatctagaatattttggaacacaat 3693497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 8070637 - 8070557
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  8070637 cattataagaaagtgctttcttagtccccaagttttgctaaaataatttggaacgcaatctagaatattttggaacacaat 8070557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 8888888 - 8888808
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  8888888 cattattagaaagtgttttcttagtccccaagttttgctaaaataatttggaacgcaatctagaatattttggaacacaat 8888808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 142 - 218
Target Start/End: Complemental strand, 8884128 - 8884052
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaaca 218  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  8884128 cattattagaaagtgctttcttagtccccaagttttgctaaaatgatttggaacgcaatctagaatattttggaaca 8884052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 3673655 - 3673591
Alignment:
Q  4 tagtgtttatatagtgggggtgtacctctaagaggtacatagttatgtgaacgaagtaagcactg 68  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3673655 tagtgtttatatagtgggggtgtacctctaagaggtacatagttatgtgaacgaagtaagcactg 3673591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 3693709 - 3693645
Alignment:
Q  4 tagtgtttatatagtgggggtgtacctctaagaggtacatagttatgtgaacgaagtaagcactg 68  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3693709 tagtgtttatatagtgggggtgtacctctaagaggtacatagttatgtgaacgaagtaagcactg 3693645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 8070768 - 8070704
Alignment:
Q  4 tagtgtttatatagtgggggtgtacctctaagaggtacatagttatgtgaacgaagtaagcactg 68  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8070768 tagtgtttatatagtgggggtgtacctctaagaggtacatagttatgtgaacgaagtaagcactg 8070704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 8889005 - 8888942
Alignment:
Q  4 tagtgtttatatagtgggggtgtacctctaagaggtacatagttatgtgaacgaagtaagcact 67  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8889005 tagtgtttatatagtgggggtgtacctctaagaggtacatagttatgtgaacgaagtaagcact 8888942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 142 - 224
Target Start/End: Original strand, 6595565 - 6595647
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaatat 224  Q
    |||| ||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||| ||||||||||||||||||||    
T  6595565 cattgttagaaagtgctttcttagtccccaagttttgctaaaatattttagaacgcaatctaaaatattttggaacacaatat 6595647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 8884259 - 8884196
Alignment:
Q  4 tagtgtttatatagtgggggtgtacctctaagaggtacatagttatgtgaacgaagtaagcact 67  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  8884259 tagtgtttatatagtgggggtgtacctctaagaggtacatagttatgagaacgaagtaagcact 8884196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 10585327 - 10585408
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgct-aaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    ||||||||||||||| |||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||| |||||    
T  10585327 cattattagaaagtgttttcttagtccccaagttttgctaaaaatattttggaacgcaatctagaatattttggaatacaat 10585408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 3034733 - 3034669
Alignment:
Q  4 tagtgtttatatagtgggggtgtacctctaagaggtacatagttatgtgaacgaagtaagcactg 68  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  3034733 tagtgtttatatagtgggggtgtacctctaaaaggtatatagttatgtgaacgaagtaagcactg 3034669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 8197552 - 8197472
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    |||||||| ||||||||||||| ||||||||||| ||||||| || ||| |||||||||||||||||||||||||||||||    
T  8197552 cattattaaaaagtgctttcttggtccccaagttttgctaaattattttagaacgcaatctagaatattttggaacacaat 8197472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 30328 - 30248
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    |||||||| ||||||||||||| ||||| ||||| ||||||| || ||| |||||||||||||||||||||||||||||||    
T  30328 cattattaaaaagtgctttcttggtcccaaagttttgctaaattattttagaacgcaatctagaatattttggaacacaat 30248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 8224035 - 8223955
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    |||||||| |||||| |||||| ||||||||||| ||||||| || ||| |||||||||||||||||||||||||||||||    
T  8224035 cattattaaaaagtgttttcttggtccccaagttttgctaaattattttagaacgcaatctagaatattttggaacacaat 8223955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 18349769 - 18349849
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    |||||||| |||||||| |||| ||||||||||| ||||||| || ||| |||||||||||||||||||||||||||||||    
T  18349769 cattattaaaaagtgctgtcttggtccccaagttttgctaaattattttagaacgcaatctagaatattttggaacacaat 18349849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 142 - 216
Target Start/End: Complemental strand, 3673523 - 3673449
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaa 216  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||  ||||||| ||||    
T  3673523 cattattagaaagtgttttcttagtccccaagttttgctaaaataatttggaacacaatctgaaatatttgggaa 3673449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 142 - 221
Target Start/End: Original strand, 12898885 - 12898964
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaa 221  Q
    ||||||||||||||  |||||||||||| || || |||||||||| |||||||||||||||||||||||| | |||||||    
T  12898885 cattattagaaagttttttcttagtccctaaattttgctaaaatattttggaacgcaatctagaatatttcgaaacacaa 12898964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 14424852 - 14424933
Alignment:
Q  142 cattattagaaagtgcttt-cttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    |||||||| |||||||||| ||| ||| ||| ||| |||||||||| ||| |||||||||||||||||||||||||||||||    
T  14424852 cattattaaaaagtgcttttctttgtctccatgttttgctaaaatattttagaacgcaatctagaatattttggaacacaat 14424933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 143 - 214
Target Start/End: Complemental strand, 631898 - 631827
Alignment:
Q  143 attattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttgg 214  Q
    |||||||||||||| |||||||||||||||||| |||||||||| |||||||  ||||||  ||||||||||    
T  631898 attattagaaagtgttttcttagtccccaagttttgctaaaatattttggaatacaatctgaaatattttgg 631827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 16056135 - 16056054
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataattt-ggaacgcaatctagaatattttggaacacaat 222  Q
    |||||||||||||||| |||||||||| ||||||   ||| |||| ||| |||||||||||||| |||||||||||||||||    
T  16056135 cattattagaaagtgcattcttagtccacaagtttgactagaatatttttggaacgcaatctaggatattttggaacacaat 16056054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 214
Target Start/End: Original strand, 35456017 - 35456087
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttgg 214  Q
    ||||||||||||||| ||||||||| |||||| | |||| |||| |||| |||||||||||||||||||||||    
T  35456017 cattattagaaagtgttttcttagt-cccaagctttgctgaaat-attttgaacgcaatctagaatattttgg 35456087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 222
Target Start/End: Complemental strand, 51923295 - 51923224
Alignment:
Q  151 aaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    ||||||||||||| | ||||||||| ||||||| || ||| |||  ||||||| ||||||||||||||||||    
T  51923295 aaagtgctttcttggcccccaagttttgctaaattattttagaatacaatctataatattttggaacacaat 51923224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 218
Target Start/End: Complemental strand, 16043460 - 16043383
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaata-atttggaacgcaatctagaatattttggaaca 218  Q
    ||||||||||||||||||| ||||||||||||||   ||  ||||  ||||||| |||||||||||||||||| ||||    
T  16043460 cattattagaaagtgcttttttagtccccaagtttgacttgaatatttttggaatgcaatctagaatattttgaaaca 16043383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 67
Target Start/End: Complemental strand, 429505 - 429462
Alignment:
Q  24 tgtacctctaagaggtacatagttatgtgaacgaagtaagcact 67  Q
    |||||||||||||||| |||| ||||||||||| ||||||||||    
T  429505 tgtacctctaagaggtgcataattatgtgaacggagtaagcact 429462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 34
Target Start/End: Complemental strand, 632025 - 631995
Alignment:
Q  4 tagtgtttatatagtgggggtgtacctctaa 34  Q
    |||||||||||||||||||||||||||||||    
T  632025 tagtgtttatatagtgggggtgtacctctaa 631995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 34
Target Start/End: Original strand, 10585184 - 10585214
Alignment:
Q  4 tagtgtttatatagtgggggtgtacctctaa 34  Q
    |||||||||||||||||||||||||||||||    
T  10585184 tagtgtttatatagtgggggtgtacctctaa 10585214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 214
Target Start/End: Complemental strand, 16023447 - 16023374
Alignment:
Q  143 attattagaaagtgctttcttagtccccaagttat--gctaaaataatttggaacgcaatctagaatattttgg 214  Q
    ||||||||||| || ||||||||||||  |||| |  ||||||||| |||||||||||||||  ||||||||||    
T  16023447 attattagaaaatgttttcttagtccctgagttttttgctaaaatattttggaacgcaatctgaaatattttgg 16023374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 429369 - 429289
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    ||||||||||||||| |||| |||||| ||  ||  ||||||||| |||||||| |||| |  |||||||||| |||||||    
T  429369 cattattagaaagtgttttcgtagtccacagatttggctaaaatattttggaacacaatttgaaatattttggtacacaat 429289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 186
Target Start/End: Complemental strand, 35458231 - 35458187
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaata 186  Q
    ||||||||||||||| ||||||||||||| |||| | ||||||||    
T  35458231 cattattagaaagtgttttcttagtccccgagtttttctaaaata 35458187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 182
Target Start/End: Original strand, 45903718 - 45903758
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaa 182  Q
    ||||||||||||||| ||||||||||||||| || ||||||    
T  45903718 cattattagaaagtgttttcttagtccccaaattttgctaa 45903758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 214
Target Start/End: Complemental strand, 53359041 - 53358969
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttgg 214  Q
    |||||||| |||||  |||||| ||||||||||| || ||||||| |||||||| |||| |  ||||||||||    
T  53359041 cattattaaaaagtattttcttcgtccccaagttttgataaaatattttggaacacaatatgaaatattttgg 53358969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 10159852 - 10159932
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  10159852 cattattagaaagtactttcttagtccccaagttttgctaaaataatttggaacgcaatctagaatattttggaacacaat 10159932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 142 - 224
Target Start/End: Complemental strand, 28856087 - 28856005
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaatat 224  Q
    ||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||    
T  28856087 cattattagaaagtgcttttttagtccccaagttttgctaaaatattttggaacgcaatctagaatattttggaatacaatat 28856005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 142 - 215
Target Start/End: Complemental strand, 30659102 - 30659029
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttgga 215  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||    
T  30659102 cattattagaaagtgctttcttagtccccaagttttgctaaaataatttggaacgcaatctataatattttgga 30659029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 10159722 - 10159785
Alignment:
Q  4 tagtgtttatatagtgggggtgtacctctaagaggtacatagttatgtgaacgaagtaagcact 67  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  10159722 tagtgtttatatagtgggggtgtacctctaagaggtacatagttatgtggacgaagtaagcact 10159785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 30659233 - 30659170
Alignment:
Q  4 tagtgtttatatagtgggggtgtacctctaagaggtacatagttatgtgaacgaagtaagcact 67  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  30659233 tagtgtttatatagtgggggtgtacctctaagaggtacatagttatttgaacgaagtaagcact 30659170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 17452723 - 17452803
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    ||||||||||||||| |||||| ||||| ||||| |||| ||||| ||| |||||||||||||||||||||||||||||||    
T  17452723 cattattagaaagtgttttcttggtccctaagttttgctgaaatattttagaacgcaatctagaatattttggaacacaat 17452803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 152 - 222
Target Start/End: Complemental strand, 34070509 - 34070439
Alignment:
Q  152 aagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    |||||||||||| ||||||||||| ||||||| || ||| |||||||||||||||||||||||||||||||    
T  34070509 aagtgctttcttggtccccaagttttgctaaattattttagaacgcaatctagaatattttggaacacaat 34070439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 6297051 - 6297132
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgct-aaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    ||||||||||||||| ||||||||| |||||||| | || |||||| |||||||||||||||||||||||||||||| ||||    
T  6297051 cattattagaaagtgttttcttagttcccaagttttactgaaaatattttggaacgcaatctagaatattttggaacgcaat 6297132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 24292586 - 24292666
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    |||||||| |||||| |||||| ||||||||||| ||||||| || ||| ||||||||||||||||||||||||| |||||    
T  24292586 cattattaaaaagtgttttcttggtccccaagttttgctaaattattttagaacgcaatctagaatattttggaatacaat 24292666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 142 - 214
Target Start/End: Complemental strand, 35602590 - 35602519
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttgg 214  Q
    ||||||||||||||| ||| |||||||||||||| ||||||||| ||||||||||||||||| ||||||||||    
T  35602590 cattattagaaagtgtttttttagtccccaagttttgctaaaat-atttggaacgcaatctataatattttgg 35602519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 42249307 - 42249228
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    |||||||| ||||||||||||| ||||||||||| ||||||| || ||| || ||||||||||||||||||||||||||||    
T  42249307 cattattaaaaagtgctttctt-gtccccaagttttgctaaattattttagatcgcaatctagaatattttggaacacaat 42249228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 30635735 - 30635656
Alignment:
Q  143 attattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    |||| ||||| |||||||||||||||  |||||||||||||||| ||| ||| ||||||||||||||||| |||||||||    
T  30635735 attaatagaaggtgctttcttagtccttaagttatgctaaaatatttttgaaagcaatctagaatattttagaacacaat 30635656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 146 - 222
Target Start/End: Complemental strand, 22845335 - 22845261
Alignment:
Q  146 attagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    |||||||||||||||||||||||||  ||| |||||||||| |||| ||| |||| |||||||||||||||||||||    
T  22845335 attagaaagtgctttcttagtcccc--gttttgctaaaatattttgaaacacaatgtagaatattttggaacacaat 22845261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 7559467 - 7559547
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    |||||||| |||||  |||||| ||||||||||| |||||||||| ||| |||||||| ||| ||||||||||||||||||    
T  7559467 cattattaaaaagtattttctttgtccccaagttttgctaaaatattttagaacgcaaactaaaatattttggaacacaat 7559547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 24285909 - 24285988
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    |||||||| ||||||||||||| ||||||||||| ||||| | || ||| ||||||||||||| ||||||||||| |||||    
T  24285909 cattatta-aaagtgctttcttggtccccaagttttgctacattattttagaacgcaatctagcatattttggaatacaat 24285988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 25375864 - 25375784
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    |||||||| |||||| ||||||  |||||||||| | |||||||| ||| ||| |||||||| ||||||||||||||||||    
T  25375864 cattattaaaaagtgttttctttctccccaagttttactaaaatattttagaatgcaatctataatattttggaacacaat 25375784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 214
Target Start/End: Original strand, 30640148 - 30640220
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttgg 214  Q
    ||||||||||||||| |||| ||||||||||||| |||||||||| |||||||| |||| |  ||||||||||    
T  30640148 cattattagaaagtgttttcgtagtccccaagttttgctaaaatattttggaacacaatttgaaatattttgg 30640220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 143 - 218
Target Start/End: Complemental strand, 17327988 - 17327912
Alignment:
Q  143 attattagaaagtgctttcttagtcccc-aagttatgctaaaataatttggaacgcaatctagaatattttggaaca 218  Q
    |||||||||||||| ||| || |||||| ||||| | |||||||| ||| |||||||||||| ||||||||||||||    
T  17327988 attattagaaagtgttttttttgtcccccaagttttactaaaatatttttgaacgcaatctaaaatattttggaaca 17327912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 214
Target Start/End: Complemental strand, 30629799 - 30629727
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttgg 214  Q
    ||||||||| ||||| ||||||||||||||| || |||||||||| |||||| || |||||  ||||||||||    
T  30629799 cattattaggaagtgttttcttagtccccaaattttgctaaaatattttggatcgtaatctgaaatattttgg 30629727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 19588689 - 19588752
Alignment:
Q  4 tagtgtttatatagtgggggtgtacctctaagaggtacatagttatgtgaacgaagtaagcact 67  Q
    |||||||||||||||||||||||||||||||  | |||||| ||| ||||| ||| ||||||||    
T  19588689 tagtgtttatatagtgggggtgtacctctaaatgatacataattacgtgaatgaattaagcact 19588752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 62
Target Start/End: Complemental strand, 35602687 - 35602629
Alignment:
Q  4 tagtgtttatatagtgggggtgtacctctaagaggtacatagttatgtgaacgaagtaa 62  Q
    ||||||||||||| ||| ||||||||||||| || |||||| ||||||||| |||||||    
T  35602687 tagtgtttatatattggaggtgtacctctaaaagatacataattatgtgaatgaagtaa 35602629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 222
Target Start/End: Original strand, 377432 - 377496
Alignment:
Q  158 tttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    |||||| ||||||| ||| ||||| |||| ||| |||| ||||||||||||||||| ||||||||    
T  377432 tttctttgtccccatgttttgctagaatattttagaacacaatctagaatattttgaaacacaat 377496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 214
Target Start/End: Complemental strand, 6857275 - 6857203
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttgg 214  Q
    |||||||| | ||||||||||| |||||||| || ||||||| || ||| ||| |||||||| ||||||||||    
T  6857275 cattattaaagagtgctttcttggtccccaatttttgctaaattatttttgaatgcaatctaaaatattttgg 6857203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 35
Target Start/End: Complemental strand, 30637234 - 30637203
Alignment:
Q  4 tagtgtttatatagtgggggtgtacctctaag 35  Q
    ||||||||||||||||||||||||||||||||    
T  30637234 tagtgtttatatagtgggggtgtacctctaag 30637203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 34
Target Start/End: Original strand, 6296915 - 6296945
Alignment:
Q  4 tagtgtttatatagtgggggtgtacctctaa 34  Q
    |||||||||||||||||||||||||||||||    
T  6296915 tagtgtttatatagtgggggtgtacctctaa 6296945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 17452515 - 17452582
Alignment:
Q  4 tagtgtttatatagtgggggtgtacctctaagagg-tacatagttatgtgaacgaagtaagcactggag 71  Q
    ||||||||||||||||||  ||||||| |||  || |||||| |||||||||||||||||||| |||||    
T  17452515 tagtgtttatatagtgggt-tgtacctttaaagggatacataattatgtgaacgaagtaagcattggag 17452582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 3095047 - 3094967
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  3095047 cattattagaaagtgttttcttagtccccaagttttgctaaaataatttggaacgcaatctagaatattttggaacacaat 3094967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 1067376 - 1067296
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    |||||||||||||||||||||||||| ||||||| |||||||||| ||| |||||||||||||||||||||||||||||||    
T  1067376 cattattagaaagtgctttcttagtctccaagttttgctaaaatattttagaacgcaatctagaatattttggaacacaat 1067296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 40232529 - 40232609
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  40232529 cattagtagaaagtgttttcttagtccccaagttatgctaaaatattttgaaacgcaatctagaatattttggaacacaat 40232609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 3095178 - 3095114
Alignment:
Q  4 tagtgtttatatagtgggggtgtacctctaagaggtacatagttatgtgaacgaagtaagcactg 68  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  3095178 tagtgtttatatagtgggggtgtacctttaagaggtacatagttatgtgaacaaagtaagcactg 3095114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 41097095 - 41097176
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgct-aaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    ||||||||||||||| |||||||||||||||||| |||| |||||| ||||||||||||||||||||||||| ||| |||||    
T  41097095 cattattagaaagtgttttcttagtccccaagttttgctaaaaatattttggaacgcaatctagaatattttcgaatacaat 41097176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 21498750 - 21498671
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    |||||||| ||||||||||||| ||||||||||| ||||||| || ||| |||||||||||||||||||||||||||||||    
T  21498750 cattattaaaaagtgctttctt-gtccccaagttttgctaaattattttagaacgcaatctagaatattttggaacacaat 21498671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 149 - 222
Target Start/End: Original strand, 8267015 - 8267089
Alignment:
Q  149 agaaagtgctttcttagtcccc-aagttatgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    |||||||| |||||||| |||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  8267015 agaaagtgttttcttagccccccaagttttgctaaaatattttggaacgcaatctagaatattttggaacacaat 8267089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 144 - 222
Target Start/End: Original strand, 16836422 - 16836500
Alignment:
Q  144 ttattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    |||||| |||||| |||||| ||||||||||| |||||||||| ||| ||||||||||||||||||||| |||||||||    
T  16836422 ttattaaaaagtgatttctttgtccccaagttttgctaaaatattttagaacgcaatctagaatattttagaacacaat 16836500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 52100221 - 52100301
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    |||||| | |||||| |||||| ||||||||||| ||||||| || ||| |||||||||||||||||||||||||||||||    
T  52100221 cattatcaaaaagtgttttcttggtccccaagttttgctaaattattttagaacgcaatctagaatattttggaacacaat 52100301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 17213583 - 17213662
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    ||||||||||||||| ||||||| |||  ||||| |||||||||| |||||||||||||||||||| |||||||| |||||    
T  17213583 cattattagaaagtgttttcttaatcct-aagttttgctaaaatattttggaacgcaatctagaattttttggaatacaat 17213662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 19725043 - 19725123
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    |||||||| |||||| |||||| ||||||||||| |||||||||| ||| ||||||||||||||||| |||| ||| ||||    
T  19725043 cattattaaaaagtgttttctttgtccccaagttttgctaaaatattttagaacgcaatctagaataatttgaaactcaat 19725123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 162 - 216
Target Start/End: Complemental strand, 13894235 - 13894181
Alignment:
Q  162 ttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaa 216  Q
    |||||||||||||| |||||||||| |||||||||||||||| ||||||||||||    
T  13894235 ttagtccccaagttttgctaaaatattttggaacgcaatctaaaatattttggaa 13894181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 2368014 - 2367933
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaa-tctagaatattttggaacacaat 222  Q
    |||||||| ||||||||||||| ||||| ||||| ||||||| || ||| |||||||| ||||||||||||||||| |||||    
T  2368014 cattattaaaaagtgctttcttggtcccaaagttttgctaaattattttagaacgcaattctagaatattttggaatacaat 2367933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 143 - 216
Target Start/End: Original strand, 8273294 - 8273367
Alignment:
Q  143 attattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaa 216  Q
    |||||||||||||| ||||||||||| |||||| | |||||||| |||| |||||| | |||||||||||||||    
T  8273294 attattagaaagtgttttcttagtcctcaagttttactaaaatattttgaaacgcattatagaatattttggaa 8273367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 2384368 - 2384448
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    |||||||| ||||||||||||| ||||| ||||| ||||||| || ||| |||||||| ||| |||||||||||| |||||    
T  2384368 cattattaaaaagtgctttcttggtcccaaagttttgctaaattattttagaacgcaaactataatattttggaatacaat 2384448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 214
Target Start/End: Original strand, 27308065 - 27308137
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttgg 214  Q
    ||||||| ||||||||||||||| |||||||| | || ||||||| ||||||||||||| || ||||||||||    
T  27308065 cattattggaaagtgctttcttaatccccaagctttgataaaatattttggaacgcaatataaaatattttgg 27308137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 22428353 - 22428398
Alignment:
Q  177 tgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    |||||||||| |||  ||||||||||||||||||||||||||||||    
T  22428353 tgctaaaatattttataacgcaatctagaatattttggaacacaat 22428398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 26199429 - 26199384
Alignment:
Q  177 tgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    |||||||||| ||| |||||||||||| ||||||||||||||||||    
T  26199429 tgctaaaatattttagaacgcaatctaaaatattttggaacacaat 26199384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 214
Target Start/End: Original strand, 23284976 - 23285048
Alignment:
Q  143 attattagaaagtgctttcttagtccccaagttatgc-taaaataatttggaacgcaatctagaatattttgg 214  Q
    ||||||| ||| || |||||||||||| ||||| ||| ||||||| |||||||||||||||  ||||||||||    
T  23284976 attattataaattgttttcttagtccctaagttttgcctaaaatattttggaacgcaatctgaaatattttgg 23285048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 17213179 - 17213242
Alignment:
Q  4 tagtgtttatatagtgggggtgtacctctaagagg--tacatagttatgtgaacgaagtaagcact 67  Q
    ||||||||||||||  ||||||||||||||| |||  |||||| |||||| |||||||||||||||    
T  17213179 tagtgtttatatag--ggggtgtacctctaataggggtacataattatgtaaacgaagtaagcact 17213242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 8273160 - 8273229
Alignment:
Q  4 tagtgtttatatagtgggggtgtacctctaa--gaggtacatagttatgtgaacgaagtaagcactggag 71  Q
    ||||| ||||||||||||  ||||||||| |  || ||||||| ||||||||||||||||||||| ||||    
T  8273160 tagtgcttatatagtgggtttgtacctctgatggacgtacataattatgtgaacgaagtaagcaccggag 8273229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 212
Target Start/End: Original strand, 26319382 - 26319452
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatatttt 212  Q
    ||||||||||||||||||||||| |  |||||||   ||| |||| |||||||| ||||||| ||||||||    
T  26319382 cattattagaaagtgctttcttaatttccaagtttgactagaatattttggaacacaatctaaaatatttt 26319452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 34
Target Start/End: Original strand, 41096952 - 41096982
Alignment:
Q  4 tagtgtttatatagtgggggtgtacctctaa 34  Q
    |||||||||||||||||||||||||||||||    
T  41096952 tagtgtttatatagtgggggtgtacctctaa 41096982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 214
Target Start/End: Original strand, 23254356 - 23254429
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatg-ctaaaataatttggaacgcaatctagaatattttgg 214  Q
    |||||||| |||||| |||||||||||  ||||| || |||||||| |||||||| ||||| | ||||||||||    
T  23254356 cattattaaaaagtgttttcttagtccataagttttgactaaaatattttggaacacaatcgaaaatattttgg 23254429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 8887 - 8950
Alignment:
Q  4 tagtgtttatatagtgggggtgtacctctaagaggtacatagttatgtgaacgaagtaagcact 67  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8887 tagtgtttatatagtgggggtgtacctctaagaggtacatagttatgtgaacgaagtaagcact 8950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 142 - 212
Target Start/End: Original strand, 9016 - 9087
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgct-aaaataatttggaacgcaatctagaatatttt 212  Q
    ||||||||||||||| |||||||||||||||||| |||| |||||| |||||||||||||||||||||||||    
T  9016 cattattagaaagtgttttcttagtccccaagttttgctaaaaatattttggaacgcaatctagaatatttt 9087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 2e-26; HSPs: 35)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 11017205 - 11017285
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    ||||||||||||||| |||| ||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||    
T  11017205 cattattagaaagtgttttcatagtccccaagttttgctaaaatattttggaacgtaatctagaatattttggaacacaat 11017285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 47102487 - 47102407
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    ||||||||||||||| |||||||||| |||| || |||||||||| |||||||||||||||||||||||||||||||||||    
T  47102487 cattattagaaagtgttttcttagtctccaaattttgctaaaatattttggaacgcaatctagaatattttggaacacaat 47102407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 9650097 - 9650176
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    |||||||||||||||||||||||||||| ||||| |||||||||| ||||||  |||||||||||||||||||||||||||    
T  9650097 cattattagaaagtgctttcttagtccc-aagttttgctaaaatattttggattgcaatctagaatattttggaacacaat 9650176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 27257174 - 27257093
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgct-aaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    ||||||||||||||| |||||||||||||||||| |||| |||||| ||||||||||||||||||||||||| |||| ||||    
T  27257174 cattattagaaagtgttttcttagtccccaagttttgctaaaaatattttggaacgcaatctagaatattttagaacccaat 27257093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 4 - 64
Target Start/End: Complemental strand, 23866814 - 23866754
Alignment:
Q  4 tagtgtttatatagtgggggtgtacctctaagaggtacatagttatgtgaacgaagtaagc 64  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||    
T  23866814 tagtgtttatataatgggggtgtacctctaagaggtacatagttatgtgaatgaagtaagc 23866754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 142 - 211
Target Start/End: Original strand, 40864539 - 40864609
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgct-aaaataatttggaacgcaatctagaatattt 211  Q
    ||||||||||||||| |||||||||||||||||| |||| |||||| ||||||||||||||||||||||||    
T  40864539 cattattagaaagtgttttcttagtccccaagttttgctaaaaatattttggaacgcaatctagaatattt 40864609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 10499251 - 10499332
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaat-attttggaacacaat 222  Q
    |||||||||||||||||||||||||| ||||| | |||||||||| |||||||| |||| |||||| |||||||||||||||    
T  10499251 cattattagaaagtgctttcttagtctccaagctttgctaaaatattttggaacacaatttagaataattttggaacacaat 10499332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 10504280 - 10504361
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaat-attttggaacacaat 222  Q
    |||||||||||||||||||||||||| ||||| | |||||||||| |||||||| |||| |||||| |||||||||||||||    
T  10504280 cattattagaaagtgctttcttagtctccaagctttgctaaaatattttggaacacaatttagaataattttggaacacaat 10504361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 19097358 - 19097277
Alignment:
Q  142 cattattagaaagtgcttt-cttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    |||||||| |||||||||| ||| ||| ||| ||| |||||||||| ||| |||||||||||||||||||||||||||||||    
T  19097358 cattattaaaaagtgcttttctttgtctccatgttttgctaaaatattttagaacgcaatctagaatattttggaacacaat 19097277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 9649966 - 9650029
Alignment:
Q  4 tagtgtttatatagtgggggtgtacctctaagaggtacatagttatgtgaacgaagtaagcact 67  Q
    |||||||||||||||   ||||||| ||||||||||||||||||||||||| ||||||||||||    
T  9649966 tagtgtttatatagtccaggtgtacatctaagaggtacatagttatgtgaatgaagtaagcact 9650029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 142 - 224
Target Start/End: Complemental strand, 11247511 - 11247429
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaatat 224  Q
    ||||||||||||||| ||||||||| |||||||| ||||||||||  |||||||||| |||| | ||||||||  ||||||||    
T  11247511 cattattagaaagtgttttcttagtacccaagttttgctaaaatatcttggaacgcagtctaaattattttggtgcacaatat 11247429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 838481 - 838562
Alignment:
Q  142 cattattagaaagtgcttt-cttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    |||||||| |||||| ||| ||| ||| ||| ||| |||||||||| |||||||| ||||||||||||||||||||||||||    
T  838481 cattattaaaaagtgattttctttgtctccatgttttgctaaaatattttggaacacaatctagaatattttggaacacaat 838562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 1203661 - 1203742
Alignment:
Q  142 cattattagaaagtgcttt-cttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    |||||||| |||||| ||| ||| ||| ||| ||| |||||||||| |||||||| ||||||||||||||||||||||||||    
T  1203661 cattattaaaaagtgattttctttgtctccatgttttgctaaaatattttggaacacaatctagaatattttggaacacaat 1203742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 47102624 - 47102560
Alignment:
Q  4 tagtgtttatatagtgggggtgtacctcta--agaggtacatagttatgtgaacgaagtaagcac 66  Q
    ||||||||||||| ||||||||||||||||  || |||||||| |||||||||||||||||||||    
T  47102624 tagtgtttatatattgggggtgtacctctaataggggtacataattatgtgaacgaagtaagcac 47102560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 167 - 222
Target Start/End: Complemental strand, 36477916 - 36477861
Alignment:
Q  167 ccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    ||||||||| ||||||| || ||| |||||||||||||||||||||||||||||||    
T  36477916 ccccaagttttgctaaattactttagaacgcaatctagaatattttggaacacaat 36477861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 142 - 184
Target Start/End: Complemental strand, 8076953 - 8076911
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaa 184  Q
    ||||||||||||||||||||||||||||||||||||| |||||    
T  8076953 cattattagaaagtgctttcttagtccccaagttatgataaaa 8076911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 211
Target Start/End: Complemental strand, 9009092 - 9009023
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattt 211  Q
    ||||||||||||||| |||||||||| | |||||  ||||||||| |||||||| ||||||| |||||||    
T  9009092 cattattagaaagtgttttcttagtctcaaagtttagctaaaatattttggaacacaatctataatattt 9009023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 1044304 - 1044245
Alignment:
Q  9 tttatatagtgggggtgtacctctaagagg-tacatagttatgtgaacgaagtaagcact 67  Q
    |||||||| |||||||||| |||||||||| ||| || ||||||||||||||||||||||    
T  1044304 tttatataatgggggtgtagctctaagagggtacgtaattatgtgaacgaagtaagcact 1044245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 146 - 212
Target Start/End: Complemental strand, 1044174 - 1044108
Alignment:
Q  146 attagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatatttt 212  Q
    |||||||||||||||||||||   |||||| | |||||||| |||||||||||||||  ||||||||    
T  1044174 attagaaagtgctttcttagttgtcaagttttactaaaatattttggaacgcaatctgaaatatttt 1044108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 8954387 - 8954469
Alignment:
Q  142 cattattagaaagtgcttt-cttagtccccaagttatg-ctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    |||||||| |||||||||| ||| ||| ||| ||| || |||||||| ||| |||| ||||||||||||||||||||||||||    
T  8954387 cattattaaaaagtgcttttctttgtctccatgttttggctaaaatattttagaacacaatctagaatattttggaacacaat 8954469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 224
Target Start/End: Original strand, 10488452 - 10488534
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaatat 224  Q
    |||||||||||| || |||||||||||||||||| ||||||||||  || |||| ||||||  |||| |||||  ||||||||    
T  10488452 cattattagaaaatgttttcttagtccccaagttttgctaaaatatcttagaacacaatctgaaatactttggtgcacaatat 10488534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 200
Target Start/End: Original strand, 10531995 - 10532053
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaat 200  Q
    ||||||||||||||| |||||||||| ||||| | ||||||| || |||||||||||||    
T  10531995 cattattagaaagtgttttcttagtctccaagctttgctaaactattttggaacgcaat 10532053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 845673 - 845718
Alignment:
Q  177 tgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    |||||||||| ||| |||| ||||||||||||||||||||||||||    
T  845673 tgctaaaatattttagaacacaatctagaatattttggaacacaat 845718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 853054 - 853099
Alignment:
Q  177 tgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    |||||||||| ||| |||| ||||||||||||||||||||||||||    
T  853054 tgctaaaatattttagaacacaatctagaatattttggaacacaat 853099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 1211058 - 1211103
Alignment:
Q  177 tgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    |||||||||| ||| |||| ||||||||||||||||||||||||||    
T  1211058 tgctaaaatattttagaacacaatctagaatattttggaacacaat 1211103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 203
Target Start/End: Complemental strand, 11296967 - 11296907
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatcta 203  Q
    ||||||||||||||| ||||||||| |||||||| |||||||||| |||| |||||| ||||    
T  11296967 cattattagaaagtgatttcttagtacccaagtt-tgctaaaatattttgaaacgcagtcta 11296907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 208
Target Start/End: Original strand, 13343562 - 13343627
Alignment:
Q  143 attattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaata 208  Q
    |||||| |||||||||||||||||| ||||| | |||||||||| |||| ||| |||| |||||||    
T  13343562 attattcgaaagtgctttcttagtctccaagatttgctaaaatattttgaaacacaatttagaata 13343627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 222
Target Start/End: Original strand, 13346502 - 13346575
Alignment:
Q  150 gaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaat-attttggaacacaat 222  Q
    |||||||||||||||||| ||||| | |||||||||| |||| ||| |||| |||||| |||||||| ||||||    
T  13346502 gaaagtgctttcttagtctccaagatttgctaaaatattttgaaacacaatttagaataattttggaccacaat 13346575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 62
Target Start/End: Complemental strand, 8077088 - 8077029
Alignment:
Q  4 tagtgtttatatagtgggggtgtacctctaaga-ggtacatagttatgtgaacgaagtaa 62  Q
    |||| |||||||| ||||||||||||||||| | |||||||| |||||||||| ||||||    
T  8077088 tagtatttatatattgggggtgtacctctaatagggtacataattatgtgaacaaagtaa 8077029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 213
Target Start/End: Complemental strand, 7839041 - 7838971
Alignment:
Q  143 attattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttg 213  Q
    |||||||||||||  ||| ||| |||| ||||| |||||||||| ||| ||| |||||||| |||||||||    
T  7839041 attattagaaagtatttttttaatccctaagttttgctaaaatattttcgaatgcaatctaaaatattttg 7838971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 9009205 - 9009159
Alignment:
Q  21 gggtgtacctctaagaggtacatagttatgtgaacgaagtaagcact 67  Q
    ||||||||||||||| ||| |||| |||||||||| |||||||||||    
T  9009205 gggtgtacctctaaggggtgcataattatgtgaacaaagtaagcact 9009159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 224
Target Start/End: Original strand, 10488262 - 10488344
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaatat 224  Q
    |||||||| ||| || |||||||||||||| ||| |||||||||| ||| |||| ||||||  |||| |||||  ||||||||    
T  10488262 cattattacaaaatgttttcttagtccccaggttttgctaaaatattttagaacacaatctgaaatactttggtgcacaatat 10488344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 40997834 - 40997880
Alignment:
Q  7 tgtttatatagtgggggtgtacctctaagaggtacatagttatgtga 53  Q
    ||||||||||||||||||||||||||||| |  ||||| ||||||||    
T  40997834 tgtttatatagtgggggtgtacctctaagggaaacataattatgtga 40997880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 203
Target Start/End: Complemental strand, 11289163 - 11289103
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatcta 203  Q
    ||||||||||||||| ||||||||| |||||||| ||||||||||  ||| |||||| ||||    
T  11289163 cattattagaaagtgatttcttagtacccaagtt-tgctaaaatatcttgaaacgcagtcta 11289103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 214
Target Start/End: Complemental strand, 15566276 - 15566205
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttgg 214  Q
    |||| |||||||||| ||||||||| || ||||| || ||||||| ||||||| |||||||  ||||||||||    
T  15566276 catttttagaaagtgttttcttagt-ccaaagttttgttaaaatattttggaatgcaatctgaaatattttgg 15566205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 52054 - 52135
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgct-aaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    ||||||||||||||| |||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||| |||||    
T  52054 cattattagaaagtgttttcttagtccccaagttttgctaaaaatattttggaacgcaatctagaatattttggaatacaat 52135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 47110 - 47191
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgct-aaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    ||||||||||||||| |||||||||||||||||| |||| |||||| ||| ||||||||||||||||||||||||| |||||    
T  47110 cattattagaaagtgttttcttagtccccaagttttgctaaaaatattttagaacgcaatctagaatattttggaatacaat 47191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 6111898 - 6111979
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgct-aaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    ||||||||||||||| |||||||||||||||||| |||| |||||| || ||||||||||||||||||||||||||||||||    
T  6111898 cattattagaaagtgttttcttagtccccaagttttgctaaaaatatttcggaacgcaatctagaatattttggaacacaat 6111979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 14074105 - 14074025
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    |||||||| ||||||||||||| ||||||||||| ||||||| || ||| ||| |||||||| ||||||||||||||||||    
T  14074105 cattattaaaaagtgctttcttggtccccaagttttgctaaattattttagaatgcaatctataatattttggaacacaat 14074025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 142 - 212
Target Start/End: Original strand, 2862673 - 2862743
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatatttt 212  Q
    ||||||||||||||| ||||||||||| |||||| |||||||||| ||| |||||||||||  ||||||||    
T  2862673 cattattagaaagtgttttcttagtcctcaagttttgctaaaatattttagaacgcaatctgaaatatttt 2862743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 142 - 212
Target Start/End: Original strand, 2881976 - 2882046
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatatttt 212  Q
    ||||||||||||||||||| ||||||| |||||| |||||||||| ||| |||||||||||  ||||||||    
T  2881976 cattattagaaagtgcttttttagtcctcaagttttgctaaaatattttagaacgcaatctgaaatatttt 2882046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 26981658 - 26981577
Alignment:
Q  142 cattattagaaagtgcttt-cttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    |||||||| |||||| ||| ||| ||| ||| ||| |||||||||| ||| |||||||||||||||||||||||||||||||    
T  26981658 cattattaaaaagtgattttctttgtctccatgttttgctaaaatattttagaacgcaatctagaatattttggaacacaat 26981577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 2759261 - 2759326
Alignment:
Q  4 tagtgtttatatagtgggggtgtacctctaa--gaggtacatagttatgtgaacgaagtaagcact 67  Q
    |||| |||||||| |||||||| ||||||||  |||||||||| ||||||||||||||||||||||    
T  2759261 tagtatttatataatgggggtgcacctctaatagaggtacataattatgtgaacgaagtaagcact 2759326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 218
Target Start/End: Complemental strand, 27074040 - 27073963
Alignment:
Q  142 cattattagaaagtgcttt-cttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaaca 218  Q
    |||||||| |||||| ||| ||| ||| ||| ||| |||||||||| ||| |||||||||||||||||||||||||||    
T  27074040 cattattaaaaagtgattttctttgtctccatgttttgctaaaatattttagaacgcaatctagaatattttggaaca 27073963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 15645756 - 15645697
Alignment:
Q  9 tttatatagtgggggtgtacctctaagagg-tacatagttatgtgaacgaagtaagcact 67  Q
    ||||||||||| ||||| ||||||||| || |||||| ||||||||||||||||||||||    
T  15645756 tttatatagtgagggtgcacctctaagcggctacataattatgtgaacgaagtaagcact 15645697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 2862552 - 2862609
Alignment:
Q  11 tatatagtgggggtgtacctctaa-gaggtacatagttatgtgaacgaagtaagcact 67  Q
    |||||||| ||||||||||||||| | |||||||| |||||||||| |||||||||||    
T  2862552 tatatagtaggggtgtacctctaaaggggtacataattatgtgaacaaagtaagcact 2862609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 2881855 - 2881912
Alignment:
Q  11 tatatagtgggggtgtacctctaa-gaggtacatagttatgtgaacgaagtaagcact 67  Q
    |||||||| ||||||||||||||| | |||||||| |||||||||| |||||||||||    
T  2881855 tatatagtaggggtgtacctctaaaggggtacataattatgtgaacaaagtaagcact 2881912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 28963875 - 28963941
Alignment:
Q  4 tagtgtttatatagtgggggtgtacctctaaga---ggtacatagttatgtgaacgaagtaagcact 67  Q
    |||||||||||||  ||||||||||||||||||   |||||||| ||| | ||||||||||||||||    
T  28963875 tagtgtttatatatcgggggtgtacctctaagagggggtacataattaagagaacgaagtaagcact 28963941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 209
Target Start/End: Original strand, 28964005 - 28964068
Alignment:
Q  146 attagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatat 209  Q
    |||||||| ||||||||||||||  ||| | |||||||||| ||||||| |||||||| |||||    
T  28964005 attagaaattgctttcttagtccttaagctttgctaaaatattttggaatgcaatctaaaatat 28964068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 7902248 - 7902329
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgct-aaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    ||||||||||||||| |||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||| |||||    
T  7902248 cattattagaaagtgttttcttagtccccaagttttgctaaaaatattttggaacgcaatctagaatattttggaatacaat 7902329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 13521122 - 13521201
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    |||||||||||||||||||||||||||| ||||| |||||||||| ||||||  |||||||||||||||||||||||||||    
T  13521122 cattattagaaagtgctttcttagtccc-aagttttgctaaaatattttggattgcaatctagaatattttggaacacaat 13521201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 39320519 - 39320439
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    ||||||||||||||| ||| ||||||||||| || |||||||||| ||||||||| |||||||||||||||||||||||||    
T  39320519 cattattagaaagtgtttttttagtccccaaattttgctaaaatattttggaacgtaatctagaatattttggaacacaat 39320439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 3997202 - 3997283
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgct-aaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    ||||||||||||||| |||||||||||||||||| |||| |||||| ||||||| ||||||||||||||||||||| |||||    
T  3997202 cattattagaaagtgttttcttagtccccaagttttgctaaaaatattttggaaagcaatctagaatattttggaatacaat 3997283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 34561361 - 34561280
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgct-aaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    ||||||||||||||| |||||||||||||||||| |||| |||||| |||||||||||||||| |||||||| |||| ||||    
T  34561361 cattattagaaagtgttttcttagtccccaagttttgctaaaaatattttggaacgcaatctaaaatattttagaacgcaat 34561280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 142 - 218
Target Start/End: Complemental strand, 41817744 - 41817667
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaa-ataatttggaacgcaatctagaatattttggaaca 218  Q
    ||||||||||||||| |||||||||||| ||||| ||||||| ||| |||||||| ||||||||||||||||||||||    
T  41817744 cattattagaaagtgttttcttagtccctaagttttgctaaatatattttggaacacaatctagaatattttggaaca 41817667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 15799271 - 15799350
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    ||||||||||||||| ||||||||||||||| || |||||||||| ||| ||||||||||||||| |||||| ||||||||    
T  15799271 cattattagaaagtgttttcttagtccccaattt-tgctaaaatatttttgaacgcaatctagaacattttgaaacacaat 15799350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 142 - 212
Target Start/End: Original strand, 52742397 - 52742467
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatatttt 212  Q
    ||||| |||||||||||||||||||||||||||| |||| ||||| |||||||||||||||  ||||||||    
T  52742397 cattactagaaagtgctttcttagtccccaagttttgcttaaatattttggaacgcaatctcaaatatttt 52742467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 13520991 - 13521054
Alignment:
Q  4 tagtgtttatatagtgggggtgtacctctaagaggtacatagttatgtgaacgaagtaagcact 67  Q
    |||||||||||||||   ||||||| ||||||||||||||||||||||||| ||||||||||||    
T  13520991 tagtgtttatatagtccaggtgtacatctaagaggtacatagttatgtgaatgaagtaagcact 13521054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 41817876 - 41817811
Alignment:
Q  4 tagtgtttatatagtgggggtgtacctctaagagg--tacatagttatgtgaacgaagtaagcact 67  Q
    |||||||||||||||||||||||| |||||| |||  |||||| ||||||||||||||||||||||    
T  41817876 tagtgtttatatagtgggggtgtatctctaataggggtacataattatgtgaacgaagtaagcact 41817811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 26035159 - 26035078
Alignment:
Q  142 cattattagaaagtgcttt-cttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    |||||||| |||||||||| ||| ||| ||| ||| |||||||||| ||| ||| |||||||||||||||||||||||||||    
T  26035159 cattattaaaaagtgcttttctttgtctccatgttttgctaaaatattttagaatgcaatctagaatattttggaacacaat 26035078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 146 - 211
Target Start/End: Original strand, 31297659 - 31297724
Alignment:
Q  146 attagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattt 211  Q
    ||||||||||| |||||||| ||||||||| |||||||||| |||||||| ||||||| |||||||    
T  31297659 attagaaagtgttttcttagcccccaagttttgctaaaatattttggaacacaatctaaaatattt 31297724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 214
Target Start/End: Complemental strand, 3310162 - 3310090
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttgg 214  Q
    ||||||||||||||| ||||||||| | |||||| || ||||||| |||||||| ||||||| ||||||||||    
T  3310162 cattattagaaagtgttttcttagttctcaagttttgttaaaatattttggaacccaatctaaaatattttgg 3310090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 9190671 - 9190751
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    |||||||| ||||||||||||| ||||||||||| ||  ||| || ||| ||||||||||||||||| |||| ||||||||    
T  9190671 cattattaaaaagtgctttcttggtccccaagttttgtaaaattattttagaacgcaatctagaatactttgaaacacaat 9190751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 3992772 - 3992841
Alignment:
Q  4 tagtgtttatatagtgggggtgtacctctaa------gaggtacatagttatgtgaacgaagtaagcact 67  Q
    |||||||||||||||||||||||||||||||      | |||||||| ||||||||||||||||||||||    
T  3992772 tagtgtttatatagtgggggtgtacctctaattaatgggggtacataattatgtgaacgaagtaagcact 3992841  T

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Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 67
Target Start/End: Complemental strand, 39320652 - 39320590
Alignment:
Q  7 tgtttatatagtgggggtgtacctctaaga--ggtacatagttatgtgaacgaagtaagcact 67  Q
    |||||||||||||||||||||||||||| |  || ||||| ||||||||||||||||| ||||    
T  39320652 tgtttatatagtgggggtgtacctctaatatgggcacataattatgtgaacgaagtaaacact 39320590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 14867926 - 14868008
Alignment:
Q  142 cattattagaaagtgcttt-cttagtccccaagttatgctaaaataatttg-gaacgcaatctagaatattttggaacacaat 222  Q
    |||||||| |||||||||| ||| ||| ||  ||| |||||||||| |||  |||||||||||||||||||||||||||||||    
T  14867926 cattattaaaaagtgcttttctttgtctccttgttttgctaaaatatttttagaacgcaatctagaatattttggaacacaat 14868008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 212
Target Start/End: Original strand, 42314758 - 42314828
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatatttt 212  Q
    ||||||||||||||| ||||||| |||  ||||| |||||| ||| ||| ||| |||||||||||||||||    
T  42314758 cattattagaaagtgttttcttaatccttaagttttgctaatatactttagaatgcaatctagaatatttt 42314828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 196
Target Start/End: Original strand, 1150492 - 1150545
Alignment:
Q  143 attattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacg 196  Q
    |||||||||||||| ||||||| | |||||||| |||||||||| |||||||||    
T  1150492 attattagaaagtgttttcttaattcccaagttttgctaaaatattttggaacg 1150545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 9184832 - 9184912
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    |||||||| |||||| |||||| |||||||| || ||  ||| || ||| ||||||||||||||||| |||| ||||||||    
T  9184832 cattattaaaaagtgttttcttggtccccaaattttgtaaaattattttagaacgcaatctagaatactttgaaacacaat 9184912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 195
Target Start/End: Complemental strand, 32545832 - 32545780
Alignment:
Q  143 attattagaaagtgctttcttagtccccaagttatgctaaaataatttggaac 195  Q
    |||||||||||||| |||||||||| |||||||  ||||||||||||| ||||    
T  32545832 attattagaaagtgttttcttagtctccaagtttagctaaaataattttgaac 32545780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 67
Target Start/End: Original strand, 52742258 - 52742317
Alignment:
Q  7 tgtttatatagtgggggtgtacctctaagaggtacatagttatgtgaacgaagtaagcact 67  Q
    |||||||||||| ||| |||||||| ||| ||| ||||||||||| |||||||||||||||    
T  52742258 tgtttatatagtaggg-tgtacctcgaaggggttcatagttatgtaaacgaagtaagcact 52742317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 186
Target Start/End: Original strand, 12383481 - 12383524
Alignment:
Q  143 attattagaaagtgctttcttagtccccaagttatgctaaaata 186  Q
    |||||||||||||| |||||||||||||||||| || |||||||    
T  12383481 attattagaaagtgttttcttagtccccaagttttggtaaaata 12383524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 222
Target Start/End: Original strand, 14891392 - 14891422
Alignment:
Q  192 gaacgcaatctagaatattttggaacacaat 222  Q
    |||||||||||||||||||||||||||||||    
T  14891392 gaacgcaatctagaatattttggaacacaat 14891422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 65
Target Start/End: Original strand, 31297533 - 31297593
Alignment:
Q  7 tgtttatatagtgggggtgtacctctaa--gaggtacatagttatgtgaacgaagtaagca 65  Q
    |||||||||||||||||||||||| |||  | |||||||  ||| ||||||||||||||||    
T  31297533 tgtttatatagtgggggtgtacctttaatgggggtacattcttaagtgaacgaagtaagca 31297593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 59361 - 59281
Alignment:
Q  143 attattagaaagtgctttcttagtccccaagttatgct-aaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    |||||||||||||| |||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||| ||||    
T  59361 attattagaaagtgttttcttagtccccaagttttgctgaaaatattttggaacgcaatctagaatattttggaacgcaat 59281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 63563 - 63483
Alignment:
Q  143 attattagaaagtgctttcttagtccccaagttatgct-aaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    |||||||||||||| |||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||| ||||    
T  63563 attattagaaagtgttttcttagtccccaagttttgctgaaaatattttggaacgcaatctagaatattttggaacgcaat 63483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 192741 - 192821
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    |||||||| ||||||||||||| ||||||||||| ||||||| || ||| |||||||||||||||||||||||||||||||    
T  192741 cattattaaaaagtgctttcttggtccccaagttttgctaaattattttagaacgcaatctagaatattttggaacacaat 192821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 49100 - 49181
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaa-taatttggaacgcaatctagaatattttggaacacaat 222  Q
    ||||||||||||||| |||||||||| ||||||| |||||||| || ||||||||||||||||||||||||||||| |||||    
T  49100 cattattagaaagtgttttcttagtctccaagttttgctaaaagtattttggaacgcaatctagaatattttggaatacaat 49181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 34861 - 34942
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgct-aaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    ||||||||||||||| |||||||||||||||||| |||| |||||| ||||||||||||||||||||||||| |||| ||||    
T  34861 cattattagaaagtgttttcttagtccccaagttttgctaaaaatattttggaacgcaatctagaatattttagaacgcaat 34942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 34721 - 34793
Alignment:
Q  1 taatagtgtttatatagtgggggtgtacctctaa------gaggtacatagttatgtgaacgaagtaagcact 67  Q
    ||||||||||||||||||||||||||||||||||      | |||||||| ||||||||||||||||||||||    
T  34721 taatagtgtttatatagtgggggtgtacctctaattaatgggggtacataattatgtgaacgaagtaagcact 34793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 149534 - 149453
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaa-taatttggaacgcaatctagaatattttggaacacaat 222  Q
    ||||||||||||||| |||||||||| ||||||| |||||||| || ||||||||||||||||||||||||||||| |||||    
T  149534 cattattagaaagtgttttcttagtctccaagttttgctaaaagtattttggaacgcaatctagaatattttggaatacaat 149453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 65390 - 65310
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    |||||||| ||||||||||||| ||||||||||| ||||||| || ||| |||||||||||||||||||||| ||||||||    
T  65390 cattattaaaaagtgctttcttggtccccaagttttgctaaattattttagaacgcaatctagaatattttgtaacacaat 65310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 81638 - 81558
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    |||||||| ||||||||||||| ||||||||||| ||||||| || ||| |||||||||||||||||||||| ||||||||    
T  81638 cattattaaaaagtgctttcttggtccccaagttttgctaaattattttagaacgcaatctagaatattttgtaacacaat 81558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0863 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0863
Description:

Target: scaffold0863; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 224 - 144
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    |||||||| ||| ||||||||| |||| |||||| ||||||| || ||| |||||||||||||||||||||||||||||||    
T  224 cattattaaaaaatgctttcttggtcctcaagttttgctaaattattttagaacgcaatctagaatattttggaacacaat 144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 24418 - 24498
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    |||||||| |||||| |||||| ||||||| ||| ||||||| || ||| ||||||||||||||||| |||||||||||||    
T  24418 cattattaaaaagtgttttcttggtccccaggttttgctaaattattttagaacgcaatctagaatactttggaacacaat 24498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 142 - 216
Target Start/End: Original strand, 398 - 473
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaa-taatttggaacgcaatctagaatattttggaa 216  Q
    |||||||||||| || |||||||||||| ||||| |||||||| || ||||||||||||| |||||||||||||||    
T  398 cattattagaaaatgttttcttagtccctaagttttgctaaaaatattttggaacgcaatatagaatattttggaa 473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0357 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: scaffold0357
Description:

Target: scaffold0357; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 3470 - 3551
Alignment:
Q  142 cattattagaaagtgcttt-cttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    |||||||| |||||||||| ||| ||| ||| ||| ||||||||||  || |||||||||||||||||||||||||||||||    
T  3470 cattattaaaaagtgcttttctttgtctccatgttttgctaaaatatcttagaacgcaatctagaatattttggaacacaat 3551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0357; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 218
Target Start/End: Original strand, 13058 - 13135
Alignment:
Q  142 cattattagaaagtgcttt-cttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaaca 218  Q
    |||||||| |||||| ||| ||| ||| ||| ||| |||||||||| ||| ||||||||||||||| | |||||||||    
T  13058 cattattaaaaagtgtttttctttgtctccatgttttgctaaaatattttagaacgcaatctagaanaatttggaaca 13135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 214
Target Start/End: Complemental strand, 83858 - 83786
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttgg 214  Q
    ||||||||||||||||||||||| || |||| || ||||| |||| |||||||||||||||  ||||||||||    
T  83858 cattattagaaagtgctttcttaatctccaaattttgctagaatattttggaacgcaatctgaaatattttgg 83786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1910 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold1910
Description:

Target: scaffold1910; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 815 - 734
Alignment:
Q  142 cattattagaaagtgcttt-cttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    |||| ||| |||||||||| ||| ||||||| ||| |||||||||| ||| ||||| |||||| ||||||||||||||||||    
T  815 cattgttaaaaagtgcttttctttgtccccatgttttgctaaaatattttagaacgtaatctataatattttggaacacaat 734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0628 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: scaffold0628
Description:

Target: scaffold0628; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 67
Target Start/End: Complemental strand, 7522 - 7458
Alignment:
Q  5 agtgtttatatagtgggggtgtacctctaagagg--tacatagttatgtgaacgaagtaagcact 67  Q
    ||||||||||| |||||| ||||||||||| |||  |||||| ||||||||||||||||||||||    
T  7522 agtgtttatatcgtggggttgtacctctaacaggggtacataattatgtgaacgaagtaagcact 7458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0628; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 212
Target Start/End: Complemental strand, 7358 - 7309
Alignment:
Q  163 tagtccccaagttatgctaaaataatttggaacgcaatctagaatatttt 212  Q
    ||||||||||| | |||||||||| ||||||| |||||||||||||||||    
T  7358 tagtccccaagctttgctaaaatattttggaaggcaatctagaatatttt 7309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0628; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 222
Target Start/End: Complemental strand, 5655 - 5591
Alignment:
Q  158 tttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    |||| ||||||||||| | |||||||||| ||||||| |||||| ||||| ||||| ||||||||    
T  5655 tttcgtagtccccaagctttgctaaaatattttggaaggcaatcgagaatgttttgcaacacaat 5591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 158 - 222
Target Start/End: Complemental strand, 200142 - 200078
Alignment:
Q  158 tttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    |||||| ||||||| ||| ||||| |||| ||| |||||||||||||||||||||| ||||||||    
T  200142 tttctttgtccccatgttttgctagaatattttagaacgcaatctagaatattttgaaacacaat 200078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0327 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0327
Description:

Target: scaffold0327; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 218
Target Start/End: Original strand, 8724 - 8799
Alignment:
Q  144 ttattagaaagtgcttt-cttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttggaaca 218  Q
    |||||| |||||||||| ||| ||| ||| ||| |||||||||| ||| |||||||||||| ||||||||||||||    
T  8724 ttattaaaaagtgcttttctttgtctccatgttttgctaaaatattttagaacgcaatctaaaatattttggaaca 8799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 213
Target Start/End: Complemental strand, 8524 - 8453
Alignment:
Q  142 cattattagaaagtgctttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatattttg 213  Q
    |||||||| ||| || |||||||||||||||||| |||||||||| |||| ||| ||||||  |||||||||    
T  8524 cattattaaaaaatgttttcttagtccccaagttttgctaaaatagtttgaaacacaatctgaaatattttg 8453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 222
Target Start/End: Complemental strand, 72043 - 71992
Alignment:
Q  171 aagttatgctaaaataatttggaacgcaatctagaatattttggaacacaat 222  Q
    |||||||||||||||| |||  ||||||||||| ||||||||||||||||||    
T  72043 aagttatgctaaaatatttttaaacgcaatctataatattttggaacacaat 71992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 212
Target Start/End: Original strand, 22956 - 23010
Alignment:
Q  158 tttcttagtccccaagttatgctaaaataatttggaacgcaatctagaatatttt 212  Q
    |||||||||||||||||| | |||||||| ||| |||||||||||  ||||||||    
T  22956 tttcttagtccccaagttttactaaaatattttagaacgcaatctgaaatatttt 23010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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