View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5570_low_25 (Length: 218)
Name: NF5570_low_25
Description: NF5570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5570_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 17 - 100
Target Start/End: Complemental strand, 36965579 - 36965496
Alignment:
| Q |
17 |
aacaacagatttaatttcaagcattgaaatatttcatgaaataacaaattaatttgtgagggatagtagagtttttctctttgt |
100 |
Q |
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| T |
36965579 |
aacaacagatttaatttcaagcattgaaatatttcatgaaataacacattaatttgtgagggatagtagagtttttctctttgt |
36965496 |
T |
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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 168 - 205
Target Start/End: Complemental strand, 36965500 - 36965463
Alignment:
| Q |
168 |
tttgttgagagaattaagctttgaccaaggagtattat |
205 |
Q |
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| T |
36965500 |
tttgttgagagaattaagctttgaccaagaagtgttat |
36965463 |
T |
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